Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 9.9e-103 376.7 181 100.0
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.9e-90 335.9 183 87.4
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 2.5e-90 335.5 183 88.5
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 9.7e-90 333.6 183 89.1
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 1.6e-89 332.8 183 89.1
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 6.3e-89 330.9 182 86.3
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 1.4e-88 329.7 183 86.3
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 9.0e-88 327.0 183 85.8
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 7.7e-87 323.9 183 84.2
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 1.0e-86 323.6 183 84.2
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 1.0e-86 323.6 182 84.1
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 2.2e-86 322.4 182 84.1
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 8.5e-86 320.5 183 82.5
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 8.5e-86 320.5 181 82.9
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.9e-85 319.3 183 83.1
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 1.9e-85 319.3 183 85.2
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 2.5e-85 318.9 211 77.3
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 2.5e-85 318.9 183 82.0
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 3.2e-85 318.5 182 83.5
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 3.2e-85 318.5 183 81.4
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 3.2e-85 318.5 193 80.8
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 5.5e-85 317.8 183 83.6
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 5.5e-85 317.8 183 83.6
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 7.2e-85 317.4 183 82.5
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 7.2e-85 317.4 183 81.4
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.7e-84 315.5 183 80.3
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 4.6e-84 314.7 181 79.6
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 1.0e-83 313.5 182 81.3
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 1.4e-83 313.2 183 81.4
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 3.9e-83 311.6 183 80.9
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 5.1e-83 311.2 183 80.3
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 6.7e-83 310.8 183 80.3
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 8.8e-83 310.5 182 82.4
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 8.8e-83 310.5 183 80.3
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 8.8e-83 310.5 182 81.9
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 1.5e-82 309.7 183 79.2
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 2.0e-82 309.3 183 79.8
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 2.0e-82 309.3 176 83.5
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 3.3e-82 308.5 183 79.2
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 7.4e-82 307.4 183 80.3
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 9.7e-82 307.0 183 79.2
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 9.7e-82 307.0 183 79.2
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 1.3e-81 306.6 183 78.1
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.7e-81 306.2 183 78.1
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 2.8e-81 305.4 200 78.0
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 2.8e-81 305.4 183 78.1
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 4.8e-81 304.7 186 80.1
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 4.8e-81 304.7 183 77.0
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 8.2e-81 303.9 181 79.0
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 8.2e-81 303.9 183 78.1
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 1.1e-80 303.5 183 78.7
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 1.8e-80 302.8 181 79.6
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 1.8e-80 302.8 181 78.5
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.5e-79 299.7 184 76.6
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 2.0e-79 299.3 182 78.0
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 2.6e-79 298.9 183 76.0
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 4.5e-79 298.1 183 76.5
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 1.0e-78 297.0 188 77.1
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 1.0e-78 297.0 182 76.9
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 2.9e-78 295.4 184 77.7
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 5.0e-78 294.7 183 76.0
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 5.0e-78 294.7 183 77.0
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 5.0e-78 294.7 183 77.0
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 6.5e-78 294.3 182 75.3
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 6.5e-78 294.3 183 76.0
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 6.5e-78 294.3 174 81.6
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 6.5e-78 294.3 182 76.4
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 8.5e-78 293.9 183 76.0
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 1.1e-77 293.5 181 77.9
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 1.9e-77 292.7 183 75.4
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 2.5e-77 292.4 183 75.4
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 4.2e-77 291.6 183 75.4
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 4.2e-77 291.6 183 75.4
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 5.5e-77 291.2 183 75.4
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 5.5e-77 291.2 183 74.3
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 7.2e-77 290.8 183 75.4
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 1.2e-76 290.0 183 74.9
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 6.1e-76 287.7 182 78.6
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 1.0e-75 287.0 183 74.3
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 1.0e-75 287.0 183 74.9
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 1.8e-75 286.2 183 74.3
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 3.0e-75 285.4 184 73.4
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 3.9e-75 285.0 179 74.9
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 5.1e-75 284.6 183 72.7
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 2.0e-74 282.7 183 72.1
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 5.7e-74 281.2 183 74.3
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 7.4e-74 280.8 184 72.8
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 1.3e-73 280.0 176 76.1
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 1.3e-73 280.0 182 70.9
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 1.7e-73 279.6 182 71.4
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 7.0e-72 274.2 181 71.3
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 1.2e-71 273.5 183 68.9
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 2.6e-71 272.3 174 75.9
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 7.2e-69 264.2 155 81.3
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 1.2e-68 263.5 182 69.8
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 6.7e-67 257.7 183 66.1
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 8.2e-65 250.8 182 64.8
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 1.8e-64 249.6 144 79.2
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 4.1e-64 248.4 207 60.4
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 7.0e-64 247.7 164 70.1
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 9.1e-64 247.3 183 62.8
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 3.5e-63 245.4 184 63.0
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 2.2e-62 242.7 127 87.4
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 6.5e-62 241.1 183 66.7
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 8.5e-62 240.7 164 68.9
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 8.5e-62 240.7 164 68.9
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 8.5e-62 240.7 145 74.5
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 5.5e-61 238.0 183 66.1
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 2.3e-59 232.6 181 59.7
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 8.8e-59 230.7 183 62.3
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 2.0e-58 229.6 182 65.4
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 3.7e-57 225.3 188 62.2
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 4.4e-50 201.8 174 63.8
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 1.8e-48 196.4 182 54.9
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 1.2e-47 193.7 308 38.6
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 2.7e-47 192.6 116 80.2
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 1.7e-46 189.9 146 65.1
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 1.2e-44 183.7 134 66.4
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 1.5e-42 176.8 113 77.9
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.4e-40 170.2 127 67.7
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 1.5e-37 160.2 223 39.5
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 4.4e-34 148.7 103 64.1
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 1.0e-30 137.5 217 36.9
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 3.9e-30 135.6 72 84.7
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 4.7e-28 128.6 77 83.1
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 4.4e-26 122.1 77 75.3
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 1.1e-24 117.5 70 72.9
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 9.2e-24 114.4 69 72.5
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 6.6e-22 108.2 81 64.2
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 3.4e-18 95.9 84 61.9
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 3.4e-18 95.9 75 62.7
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 4.4e-18 95.5 155 34.8
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.2e-15 87.4 56 69.6


User provided reference genes

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