Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 2.0e-50 202.2 106 100.0
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 3.6e-28 128.3 112 69.6
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 1.4e-24 116.3 112 65.2
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 3.2e-24 115.2 106 64.2
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 1.0e-22 110.2 109 64.2
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.1e-21 106.7 110 63.6
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 2.5e-21 105.5 110 63.6
Rhsim10G0022800 Rhododendron simsii HOM05D007293 ORTHO05D009143 2.1e-20 102.4 105 62.9
vmacro05819 Vaccinium macrocarpon HOM05D007293 ORTHO05D009143 2.8e-20 102.1 105 62.9
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 3.6e-20 101.7 112 60.7
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.1e-19 98.6 110 60.0
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 1.2e-18 96.7 103 61.2
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 2.9e-17 92.0 111 52.3
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 2.9e-17 92.0 110 60.0
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 3.7e-17 91.7 109 56.0
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 1.1e-16 90.1 106 57.5
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 1.9e-16 89.4 105 56.2
SalBow1G2453 Salvia bowleyana HOM05D005882 ORTHO05D009143 2.4e-16 89.0 98 56.1
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 3.2e-16 88.6 109 55.0
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.2e-16 88.6 111 53.2
Hma1.2p1_0802F.1_g220360 Hydrangea macrophylla HOM05D007293 ORTHO05D009143 4.1e-16 88.2 108 59.3
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 1.2e-15 86.7 109 50.5
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 4.6e-15 84.7 112 51.8
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 1.0e-14 83.6 112 50.9
CSS0016211 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.3e-14 82.4 111 52.3
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 3.9e-14 81.6 111 52.3
CSS0001505 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 5.1e-14 81.3 106 54.7
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 1.1e-13 80.1 111 52.3
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 1.5e-13 79.7 52 80.8
CSS0049977 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.5e-13 79.0 106 53.8
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 7.3e-13 77.4 109 47.7
ECA246G2262 Erigeron canadensis HOM05D007293 ORTHO05D009143 7.3e-13 77.4 105 51.4
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 7.3e-13 77.4 107 51.4
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 1.2e-12 76.6 107 50.5
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 1.2e-12 76.6 53 75.5
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 2.1e-12 75.9 112 48.2
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 3.6e-12 75.1 109 51.4
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 6.2e-12 74.3 111 46.8
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 1.4e-11 73.2 71 60.6
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 2.3e-11 72.4 109 47.7
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 2.3e-11 72.4 111 45.9
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 3.1e-11 72.0 107 48.6
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 3.1e-11 72.0 110 48.2
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 5.2e-11 71.2 108 45.4
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 6.8e-11 70.9 107 48.6
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 8.9e-11 70.5 105 50.5
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 1.2e-10 70.1 100 48.0
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.2e-10 70.1 110 47.3
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.2e-10 70.1 110 46.4
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 1.2e-10 70.1 110 49.1
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 1.2e-10 70.1 114 46.5
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.5e-10 69.7 111 44.1
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 1.5e-10 69.7 111 44.1
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 2.0e-10 69.3 110 46.4
PSO063G5020 Papaver somniferum HOM05D007293 ORTHO05D009143 2.0e-10 69.3 89 51.7
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 3.4e-10 68.6 110 46.4
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 4.4e-10 68.2 110 47.3
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 4.4e-10 68.2 52 71.2
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 7.6e-10 67.4 54 68.5
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 7.6e-10 67.4 107 46.7
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 9.9e-10 67.0 108 43.5
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 9.9e-10 67.0 100 46.0
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 9.9e-10 67.0 73 57.5
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 1.3e-09 66.6 107 45.8
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 1.7e-09 66.2 107 44.9
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 1.7e-09 66.2 92 52.2
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 2.2e-09 65.9 111 50.5
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 2.2e-09 65.9 109 43.1
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 2.2e-09 65.9 107 46.7
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 2.9e-09 65.5 106 47.2
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 6.4e-09 64.3 114 45.6
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 6.4e-09 64.3 104 49.0
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 6.4e-09 64.3 105 45.7
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 1.1e-08 63.5 109 44.0
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 1.4e-08 63.2 51 66.7
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 1.4e-08 63.2 107 42.1
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 1.4e-08 63.2 77 50.6
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 1.9e-08 62.8 103 44.7
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 2.4e-08 62.4 109 42.2
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 2.4e-08 62.4 96 47.9
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 4.1e-08 61.6 111 45.0
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 4.1e-08 61.6 106 42.5
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 4.1e-08 61.6 106 42.5
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 4.1e-08 61.6 102 48.0
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 5.4e-08 61.2 108 43.5
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 7.1e-08 60.8 112 46.4
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 9.2e-08 60.5 102 45.1
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 9.2e-08 60.5 104 44.2
PSO832G1108 Papaver somniferum HOM05D007293 ORTHO05D009143 9.2e-08 60.5 89 49.4
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 9.2e-08 60.5 108 47.2
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 1.6e-07 59.7 106 42.5
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 2.1e-07 59.3 107 43.9
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 2.1e-07 59.3 107 47.7
MBI10_g11075_MAGBIO Magnolia biondii HOM05D007293 ORTHO05D009143 4.6e-07 58.2 45 71.1
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.0e-06 57.0 77 46.8
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.0e-06 57.0 77 46.8
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 1.3e-06 56.6 106 40.6
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 1.3e-06 56.6 76 46.1
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 3.0e-06 55.5 73 50.7
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 6.6e-06 54.3 96 38.5


User provided reference genes

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