Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.8e-89 332.8 200 100.0
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 2.7e-32 142.9 112 67.9
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 2.3e-31 139.8 98 75.5
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.5e-30 137.1 118 63.6
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 1.5e-30 137.1 118 63.6
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.9e-30 136.7 117 64.1
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.9e-30 136.7 117 64.1
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 1.9e-30 136.7 112 62.5
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 4.3e-30 135.6 111 64.9
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 5.6e-30 135.2 118 62.7
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 5.6e-30 135.2 111 64.0
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 9.5e-30 134.4 118 61.9
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 1.6e-29 133.7 112 62.5
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.6e-29 133.7 112 63.4
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.8e-29 132.9 111 62.2
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 2.8e-29 132.9 118 64.4
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 3.6e-29 132.5 111 62.2
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 4.7e-29 132.1 118 59.3
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 4.7e-29 132.1 112 65.2
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 4.7e-29 132.1 98 63.3
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 4.7e-29 132.1 118 61.9
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 4.7e-29 132.1 118 61.9
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 8.0e-29 131.3 111 64.0
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 8.0e-29 131.3 111 63.1
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 1.1e-28 131.0 112 62.5
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.4e-28 130.6 111 64.0
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 1.4e-28 130.6 118 56.8
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.4e-28 130.6 118 61.9
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.3e-28 129.8 112 65.2
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 2.3e-28 129.8 118 59.3
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.3e-28 129.8 118 59.3
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 2.3e-28 129.8 118 58.5
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 3.1e-28 129.4 112 63.4
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 5.2e-28 128.6 118 59.3
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 5.2e-28 128.6 111 63.1
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 5.2e-28 128.6 112 58.9
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 6.8e-28 128.3 118 57.6
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 8.9e-28 127.9 112 61.6
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 1.5e-27 127.1 118 55.1
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.5e-27 127.1 118 56.8
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 1.5e-27 127.1 118 57.6
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 2.0e-27 126.7 112 58.9
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.0e-27 126.7 112 59.8
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 2.0e-27 126.7 112 59.8
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 2.0e-27 126.7 118 56.8
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 2.6e-27 126.3 112 58.9
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 2.6e-27 126.3 118 55.9
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.6e-27 126.3 98 60.2
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 3.4e-27 125.9 95 64.2
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 5.8e-27 125.2 112 59.8
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 9.8e-27 124.4 114 58.8
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 1.3e-26 124.0 117 55.6
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.7e-26 123.6 112 55.4
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.7e-26 123.6 118 55.9
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.7e-26 123.6 112 58.9
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.7e-26 123.6 98 62.2
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 1.7e-26 123.6 112 58.0
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 2.2e-26 123.2 112 54.5
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 2.2e-26 123.2 112 54.5
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 2.9e-26 122.9 112 61.6
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 2.9e-26 122.9 112 58.0
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 3.7e-26 122.5 118 57.6
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 3.7e-26 122.5 112 58.9
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 3.7e-26 122.5 118 55.9
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 3.7e-26 122.5 118 53.4
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 4.9e-26 122.1 118 57.6
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 4.9e-26 122.1 112 54.5
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 4.9e-26 122.1 112 54.5
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 6.4e-26 121.7 112 53.6
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 6.4e-26 121.7 112 54.5
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 8.3e-26 121.3 112 55.4
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 1.1e-25 120.9 112 54.5
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 1.1e-25 120.9 112 54.5
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.4e-25 120.6 133 50.4
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 1.4e-25 120.6 118 56.8
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 1.4e-25 120.6 118 56.8
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 1.4e-25 120.6 112 53.6
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 1.4e-25 120.6 112 53.6
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 1.4e-25 120.6 112 53.6
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 1.4e-25 120.6 112 53.6
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.9e-25 120.2 112 51.8
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.9e-25 120.2 112 55.4
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 1.9e-25 120.2 118 54.2
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.4e-25 119.8 112 54.5
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 2.4e-25 119.8 112 54.5
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 2.4e-25 119.8 118 55.1
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 2.4e-25 119.8 98 61.2
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 3.2e-25 119.4 112 54.5
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.2e-25 119.4 112 52.7
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 4.1e-25 119.0 112 54.5
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 4.1e-25 119.0 112 58.0
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 4.1e-25 119.0 112 54.5
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.1e-25 119.0 118 53.4
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 5.4e-25 118.6 95 61.1
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 5.4e-25 118.6 118 54.2
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 5.4e-25 118.6 118 55.9
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 5.4e-25 118.6 112 56.2
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 7.0e-25 118.2 97 57.7
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 7.0e-25 118.2 112 55.4
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 9.2e-25 117.9 112 55.4
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 9.2e-25 117.9 118 56.8
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 2.0e-24 116.7 118 53.4
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 3.5e-24 115.9 117 53.8
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.5e-24 115.9 112 54.5
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 4.6e-24 115.5 118 55.9
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.0e-23 114.4 112 53.6
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 1.0e-23 114.4 112 53.6
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 1.0e-23 114.4 112 53.6
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.0e-23 114.4 112 53.6
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.0e-23 114.4 112 53.6
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.0e-23 114.4 112 53.6
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 1.0e-23 114.4 112 53.6
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.0e-23 114.4 111 55.9
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.7e-23 113.6 118 54.2
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 5.0e-23 112.1 118 53.4
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 6.6e-23 111.7 111 55.0
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 8.6e-23 111.3 97 58.8
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.1e-22 110.9 111 54.1
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 1.5e-22 110.5 123 51.2
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.9e-22 110.2 133 46.6
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.9e-22 110.2 112 50.9
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 1.9e-22 110.2 111 53.2
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 5.6e-22 108.6 111 51.4
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.6e-21 107.1 98 57.1
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 2.3e-20 103.2 96 52.1
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.9e-18 96.3 118 48.3
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 3.7e-18 95.9 86 54.7
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 6.4e-18 95.1 111 50.5
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 1.1e-17 94.4 98 48.0
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 1.4e-17 94.0 111 50.5
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 1.9e-17 93.6 111 46.8
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 9.2e-17 91.3 112 42.0
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 9.2e-17 91.3 98 50.0
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.2e-16 90.9 111 45.0
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 3.5e-16 89.4 86 52.3
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 6.0e-16 88.6 98 44.9
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 2.8e-13 79.7 120 35.8
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.6e-08 63.9 61 62.3
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.3e-07 60.1 72 40.3


User provided reference genes

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