Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A558T36 Lonicera japonica HOM05D005192 ORTHO05D006023 1.8e-57 225.7 116 100.0
TWI32G1299 Tripterygium wilfordii HOM05D005192 ORTHO05D006023 1.2e-45 186.4 111 80.2
Dinv43977 Davidia involucrata HOM05D005192 ORTHO05D006023 1.4e-44 183.0 108 81.5
Cc02_g26360 Coffea canephora HOM05D005192 ORTHO05D006023 3.0e-44 181.8 108 83.3
Hma1.2p1_0353F.1_g133370 Hydrangea macrophylla HOM05D005192 ORTHO05D006023 5.1e-44 181.0 110 79.1
Solyc01g081190.4 Solanum lycopersicum HOM05D005192 ORTHO05D006023 6.7e-44 180.6 110 79.1
Sopen01g032770 Solanum pennellii HOM05D005192 ORTHO05D006023 6.7e-44 180.6 110 79.1
Atru.chr2.1677 Acer truncatum HOM05D005192 ORTHO05D006023 2.0e-43 179.1 111 77.5
PGSC0003DMG400001805 Solanum tuberosum HOM05D005192 ORTHO05D006023 2.5e-43 178.7 116 76.7
Ciclev10032932m.g Citrus clementina HOM05D005192 ORTHO05D006023 5.7e-43 177.6 111 73.9
Duzib177G0632 Durio zibethinus HOM05D005192 ORTHO05D006023 5.7e-43 177.6 113 75.2
Nitab4.5_0004594g0120 Nicotiana tabacum HOM05D005192 ORTHO05D006023 1.3e-42 176.4 108 77.8
Nitab4.5_0004800g0050 Nicotiana tabacum HOM05D005192 ORTHO05D006023 1.3e-42 176.4 108 77.8
Sabra13G0062500 Salix brachista HOM05D005192 ORTHO05D006023 1.3e-42 176.4 111 77.5
Actinidia05822 Actinidia chinensis HOM05D005192 ORTHO05D006023 1.7e-42 176.0 110 77.3
Rhsim07G0045800 Rhododendron simsii HOM05D005192 ORTHO05D006023 1.7e-42 176.0 110 78.2
Duzib128G1721 Durio zibethinus HOM05D005192 ORTHO05D006023 2.8e-42 175.3 111 73.0
Lj9C612T3 Lonicera japonica HOM05D005192 ORTHO05D006023 3.7e-42 174.9 108 75.9
Manes.09G132000 Manihot esculenta HOM05D005192 ORTHO05D006023 3.7e-42 174.9 111 72.1
COL.COLO4_08549 Corchorus olitorius HOM05D005192 ORTHO05D006023 4.8e-42 174.5 110 75.5
CAN.G700.32 Capsicum annuum HOM05D005192 ORTHO05D006023 6.3e-42 174.1 108 75.9
Sc26g0002010 Simmondsia chinensis HOM05D005192 ORTHO05D006023 8.2e-42 173.7 110 76.4
Gorai.007G248800 Gossypium raimondii HOM05D005192 ORTHO05D006023 1.1e-41 173.3 111 73.9
SGA_v2.0_scaffold98G29401 Striga asiatica HOM05D005192 ORTHO05D006023 1.4e-41 172.9 111 74.8
Potri.013G072600 Populus trichocarpa HOM05D005192 ORTHO05D006023 1.8e-41 172.6 111 75.7
THA.LOC104805728 Tarenaya hassleriana HOM05D005192 ORTHO05D006023 3.1e-41 171.8 111 73.0
Gohir.D11G235900 Gossypium hirsutum HOM05D005192 ORTHO05D006023 6.9e-41 170.6 111 73.0
Cpa.g.sc73.77 Carica papaya HOM05D005192 ORTHO05D006023 9.1e-41 170.2 111 71.2
Eucgr.E01765 Eucalyptus grandis HOM05D005192 ORTHO05D006023 1.2e-40 169.9 111 72.1
Prupe.2G101300 Prunus persica HOM05D005192 ORTHO05D006023 1.2e-40 169.9 111 73.0
DCAR_015753 Daucus carota HOM05D005192 ORTHO05D006023 1.5e-40 169.5 110 72.7
Peaxi162Scf00245g00322 Petunia axillaris HOM05D005192 ORTHO05D006023 2.0e-40 169.1 110 73.6
Thecc.05G232400 Theobroma cacao HOM05D005192 ORTHO05D006023 2.6e-40 168.7 108 75.0
PGR042G1459 Punica granatum HOM05D005192 ORTHO05D006023 4.5e-40 167.9 111 71.2
Peaxi162Scf00592g00452 Petunia axillaris HOM05D005192 ORTHO05D006023 7.7e-40 167.2 103 75.7
vmacro13581 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 1.3e-39 166.4 108 75.9
Gohir.A13G082000 Gossypium hirsutum HOM05D005192 ORTHO05D006023 1.7e-39 166.0 108 68.5
Gohir.D13G100100 Gossypium hirsutum HOM05D005192 ORTHO05D006023 3.8e-39 164.9 108 67.6
Gorai.013G112500 Gossypium raimondii HOM05D005192 ORTHO05D006023 3.8e-39 164.9 108 67.6
Migut.B01443 Erythranthe guttata HOM05D005192 ORTHO05D006023 5.0e-39 164.5 112 67.9
vmacro13584 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 5.0e-39 164.5 108 74.1
Gohir.A11G222400 Gossypium hirsutum HOM05D005192 ORTHO05D006023 6.5e-39 164.1 111 70.3
Solyc10g061870.1 Solanum lycopersicum HOM05D005192 ORTHO05D006023 6.5e-39 164.1 108 71.3
Nitab4.5_0000050g0110 Nicotiana tabacum HOM05D005192 ORTHO05D006023 1.1e-38 163.3 110 70.0
Oeu041522.2 Olea europaea HOM05D005192 ORTHO05D006023 1.1e-38 163.3 112 70.5
CANSAT01G0826 Cannabis sativa HOM05D005192 ORTHO05D006023 2.5e-38 162.2 108 66.7
Hund26918 Selenicereus undatus HOM05D005192 ORTHO05D006023 3.2e-38 161.8 108 69.4
Dinv43532 Davidia involucrata HOM05D005192 ORTHO05D006023 4.2e-38 161.4 109 72.5
Nitab4.5_0005106g0020 Nicotiana tabacum HOM05D005192 ORTHO05D006023 4.2e-38 161.4 108 70.4
GSVIVG01011324001 Vitis vinifera HOM05D005192 ORTHO05D006023 9.4e-38 160.2 111 68.5
Aa31LG2G2090 Aethionema arabicum HOM05D005192 ORTHO05D006023 1.2e-37 159.8 107 70.1
MSTRG.17088 Avicennia marina HOM05D005192 ORTHO05D006023 1.6e-37 159.5 112 66.1
ECA234G1488 Erigeron canadensis HOM05D005192 ORTHO05D006023 1.6e-37 159.5 110 64.5
Oeu060687.1 Olea europaea HOM05D005192 ORTHO05D006023 2.1e-37 159.1 106 71.7
Haze_15802 Corylus avellana HOM05D005192 ORTHO05D006023 2.7e-37 158.7 112 66.1
AUR62014514 Chenopodium quinoa HOM05D000462 ORTHO05D006023 3.6e-37 158.3 110 69.1
SalBow5G0434 Salvia bowleyana HOM05D003398 ORTHO05D003867 4.7e-37 157.9 112 64.3
Psat4g215840 Pisum sativum HOM05D005192 ORTHO05D006023 6.1e-37 157.5 111 65.8
TPR.G17364 Trifolium pratense HOM05D005192 ORTHO05D006023 1.0e-36 156.8 112 66.1
AT1G64850 Arabidopsis thaliana HOM05D005192 ORTHO05D006023 1.4e-36 156.4 103 71.8
CiPaw.02G036100 Carya illinoinensis HOM05D005192 ORTHO05D006023 1.8e-36 156.0 109 68.8
Medtr8g009870 Medicago truncatula HOM05D005192 ORTHO05D006023 1.8e-36 156.0 111 64.9
Ca_25887_v3 Cicer arietinum L. HOM05D000403 ORTHO05D000350 2.3e-36 155.6 112 65.2
FAN01G2901 Fragaria x ananassa HOM05D005192 ORTHO05D006023 2.3e-36 155.6 111 66.7
HanXRQChr11g0330951 Helianthus annuus HOM05D005192 ORTHO05D006023 3.0e-36 155.2 110 64.5
AL2G19260 Arabidopsis lyrata HOM05D005192 ORTHO05D006023 3.9e-36 154.8 103 69.9
Lalb_Chr12g0210171 Lupinus albus HOM05D005192 ORTHO05D006023 3.9e-36 154.8 112 66.1
arahy.Tifrunner.gnm1.ann1.8Z97YG Arachis hypogaea HOM05D005192 ORTHO05D006023 6.7e-36 154.1 106 69.8
arahy.Tifrunner.gnm1.ann1.SX2T07 Arachis hypogaea HOM05D005192 ORTHO05D006023 6.7e-36 154.1 106 69.8
Lj3g0015892 Lotus japonicus HOM05D005192 ORTHO05D006023 6.7e-36 154.1 116 65.5
Sp5g18870 Schrenkiella parvula HOM05D005192 ORTHO05D006023 8.8e-36 153.7 103 72.8
unitig_61.g26432 Utricularia gibba HOM05D005192 ORTHO05D006023 8.8e-36 153.7 110 66.4
CARHR056260 Cardamine hirsuta HOM05D005192 ORTHO05D006023 1.1e-35 153.3 103 68.0
FAN03G1308 Fragaria x ananassa HOM05D005192 ORTHO05D006023 1.1e-35 153.3 111 64.9
Lalb_Chr07g0194821 Lupinus albus HOM05D005192 ORTHO05D006023 1.1e-35 153.3 112 61.6
CiPaw.01G068900 Carya illinoinensis HOM05D005192 ORTHO05D006023 2.6e-35 152.1 113 62.8
BcaB05g24444 Brassica carinata HOM05D005192 ORTHO05D006023 4.4e-35 151.4 103 69.9
Lsat_1_v5_gn_4_42301 Lactuca sativa HOM05D005192 ORTHO05D006023 5.7e-35 151.0 108 62.0
Carub.0012s0005 Capsella rubella HOM05D005192 ORTHO05D006023 7.4e-35 150.6 103 68.9
Peaxi162Scf00250g00049 Petunia axillaris HOM05D005192 ORTHO05D006023 7.4e-35 150.6 111 66.7
RcHm_v2.0_Chr1g0340081 Rosa chinensis HOM05D005192 ORTHO05D006023 7.4e-35 150.6 111 62.2
BcaC03g15075 Brassica carinata HOM05D005192 ORTHO05D006023 9.7e-35 150.2 103 68.9
BcaC03g15076 Brassica carinata HOM05D005192 ORTHO05D006023 9.7e-35 150.2 103 68.9
A02p15850 Brassica napus HOM05D005192 ORTHO05D006023 9.7e-35 150.2 103 68.9
C02p26310 Brassica napus HOM05D005192 ORTHO05D006023 9.7e-35 150.2 103 68.9
BolC2t08702H Brassica oleracea HOM05D005192 ORTHO05D006023 9.7e-35 150.2 103 68.9
DCAR_029189 Daucus carota HOM05D005192 ORTHO05D006023 1.3e-34 149.8 108 63.9
FvH4_7g07320 Fragaria vesca HOM05D005192 ORTHO05D006023 2.2e-34 149.1 111 63.1
FAN10G1987 Fragaria x ananassa HOM05D005192 ORTHO05D006023 2.8e-34 148.7 107 65.4
FAN06G2558 Fragaria x ananassa HOM05D005192 ORTHO05D006023 3.7e-34 148.3 111 63.1
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 4.8e-34 147.9 106 66.0
PSO782G4714 Papaver somniferum HOM05D005192 ORTHO05D006023 6.3e-34 147.5 110 60.9
Aqoxy3G01990 Aquilegia oxysepala HOM05D005192 ORTHO05D006023 1.8e-33 146.0 111 63.1
TAR629G1606 Trochodendron aralioides HOM05D005192 ORTHO05D006023 1.8e-33 146.0 113 61.1
VMungo0331G1938 Vigna mungo HOM05D005192 ORTHO05D006023 1.8e-33 146.0 112 60.7
Phvul.010G038600 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 3.1e-33 145.2 112 60.7
Glyma.03G098300 Glycine max HOM05D005192 ORTHO05D006023 7.0e-33 144.1 112 60.7
Glyma.07G123500 Glycine max HOM05D005192 ORTHO05D006023 7.0e-33 144.1 112 60.7
AUR62038020 Chenopodium quinoa HOM05D005192 ORTHO05D006023 1.2e-32 143.3 142 52.8
HPP92_014406 Vanilla planifolia HOM05D005192 ORTHO05D006023 5.9e-32 141.0 113 55.8
Ah.05g177160 Amaranthus hybridus HOM05D005192 ORTHO05D006023 1.7e-31 139.4 110 62.7
MD02G1236300 Malus domestica HOM05D005192 ORTHO05D006023 1.7e-31 139.4 111 62.2
Nn3g21169 Nelumbo nucifera HOM05D005192 ORTHO05D006023 2.2e-31 139.0 111 58.6
PSO063G5995 Papaver somniferum HOM05D005192 ORTHO05D006023 2.9e-31 138.7 103 61.2
CiPaw.01G069000 Carya illinoinensis HOM05D005192 ORTHO05D006023 3.8e-31 138.3 106 63.2
unitig_0.g1357 Utricularia gibba HOM05D005192 ORTHO05D006023 6.5e-31 137.5 90 71.1
ClCG05G002570 Citrullus lanatus HOM05D005192 ORTHO05D006023 8.5e-31 137.1 110 58.2
Sed0012289 Sechium edule HOM05D005192 ORTHO05D006023 1.5e-30 136.3 110 61.8
Sed0020247 Sechium edule HOM05D005192 ORTHO05D006023 4.2e-30 134.8 110 59.1
CsaV3_3G010010 Cucumis sativus L. HOM05D005192 ORTHO05D006023 9.4e-30 133.7 111 58.6
Nn3g21165 Nelumbo nucifera HOM05D005192 ORTHO05D006023 1.2e-29 133.3 113 56.6
Zm00001eb071820 Zea mays HOM05D005192 ORTHO05D006023 8.0e-29 130.6 108 54.6
arahy.Tifrunner.gnm1.ann1.9NJ9Q0 Arachis hypogaea HOM05D005192 ORTHO05D006023 1.4e-28 129.8 102 62.7
QL04p052584 Quercus lobata HOM05D005192 ORTHO05D006023 1.4e-28 129.8 88 70.5
ATR0829G090 Amborella trichopoda HOM05D005192 ORTHO05D006023 2.3e-28 129.0 107 55.1
TAR629G2600 Trochodendron aralioides HOM05D005192 ORTHO05D006023 8.8e-28 127.1 108 53.7
Os04g0601400 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 1.5e-27 126.3 108 50.0
PGSC0003DMG400013231 Solanum tuberosum HOM05D005192 ORTHO05D006023 9.7e-27 123.6 82 72.0
CDE04G3605 Ceratophyllum demersum HOM05D005192 ORTHO05D006023 2.2e-26 122.5 111 50.5
Phvul.010G038700 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 2.4e-25 119.0 111 51.4
Thhalv10011151m.g Eutrema salsugineum HOM05D005192 ORTHO05D006023 3.1e-25 118.6 79 77.2
Glyma.03G098400 Glycine max HOM05D005192 ORTHO05D006023 2.0e-24 115.9 106 50.9
MELO3C006223.2 Cucumis melo HOM05D005192 ORTHO05D006023 2.9e-23 112.1 140 44.3
CsaV3_3G010000 Cucumis sativus L. HOM05D005192 ORTHO05D006023 3.2e-22 108.6 115 49.6
MELO3C006222.2 Cucumis melo HOM05D005192 ORTHO05D006023 5.5e-22 107.8 119 47.1
Mapoly0125s0044 Marchantia polymorpha HOM05D005192 ORTHO05D006023 2.1e-21 105.9 102 45.1
AagrBONN_evm.TU.Sc2ySwM_117.2458 Anthoceros agrestis HOM05D005192 ORTHO05D006023 8.0e-21 104.0 111 45.0
SMO137G0328 Selaginella moellendorffii HOM05D005192 ORTHO05D006023 3.4e-19 98.6 112 40.2
ClCG05G002560 Citrullus lanatus HOM05D005192 ORTHO05D006023 1.3e-18 96.7 116 49.1
Pp3c3_35520 Physcomitrium patens HOM05D005192 ORTHO05D006023 1.5e-14 83.2 116 37.9
Pp3c12_14230 Physcomitrium patens HOM05D005192 ORTHO05D006023 2.1e-13 79.3 103 38.8
SEGI_22185 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 2.7e-13 79.0 107 34.6
SEGI_22584 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 2.7e-13 79.0 107 34.6
SEGI_29719 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 2.7e-13 79.0 107 34.6
Lj9A615G51 Lonicera japonica HOM05D005192 ORTHO05D006023 1.4e-12 76.6 49 75.5
ATR0829G133 Amborella trichopoda HOM05D005192 ORTHO05D006023 4.0e-12 75.1 109 36.7
CBR_g41233 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-09 66.2 111 36.0
SEGI_29788 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 2.7e-08 62.4 105 34.3


User provided reference genes

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