Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A558G43 Lonicera japonica HOM05D007885 ORTHO05D010052 2.9e-42 174.9 90 100.0
Dinv43531 Davidia involucrata HOM05D007885 ORTHO05D010052 2.4e-17 92.0 94 59.6
QL04p052580 Quercus lobata HOM05D007885 ORTHO05D010052 4.2e-17 91.3 69 68.1
MD07G1078800 Malus domestica HOM05D007885 ORTHO05D010052 9.2e-17 90.1 88 61.4
Rhsim07G0045900 Rhododendron simsii HOM05D007885 ORTHO05D010052 1.2e-16 89.7 84 63.1
vmacro13585 Vaccinium macrocarpon HOM05D007885 ORTHO05D010052 1.6e-16 89.4 120 49.2
Hma1.2p1_0353F.1_g133360 Hydrangea macrophylla HOM05D007885 ORTHO05D010052 2.1e-16 89.0 80 65.0
Dinv43976 Davidia involucrata HOM05D007885 ORTHO05D010052 6.0e-16 87.4 82 63.4
Sed0017556 Sechium edule HOM05D007885 ORTHO05D010052 2.3e-15 85.5 83 59.0
Lsat_1_v5_gn_3_26720 Lactuca sativa HOM05D007885 ORTHO05D010052 3.9e-15 84.7 63 74.6
Solyc08g044345.1 Solanum lycopersicum HOM05D007885 ORTHO05D010052 3.9e-15 84.7 83 59.0
TWI34G1949 Tripterygium wilfordii HOM05D007885 ORTHO05D010052 3.9e-15 84.7 82 57.3
GSVIVG01011323001 Vitis vinifera HOM05D007885 ORTHO05D010052 3.9e-15 84.7 94 56.4
Potri.013G072700 Populus trichocarpa HOM05D007885 ORTHO05D010052 5.1e-15 84.3 74 63.5
Sabra13G0062600 Salix brachista HOM05D007885 ORTHO05D010052 8.7e-15 83.6 62 69.4
CAN.G138.10 Capsicum annuum HOM05D007885 ORTHO05D010052 1.5e-14 82.8 81 59.3
Lalb_Chr18g0057781 Lupinus albus HOM05D007885 ORTHO05D010052 1.5e-14 82.8 68 64.7
Sopen08g013480 Solanum pennellii HOM05D007885 ORTHO05D010052 1.5e-14 82.8 79 59.5
Thecc.05G232100 Theobroma cacao HOM05D007885 ORTHO05D010052 3.3e-14 81.6 80 58.8
Ciclev10033227m.g Citrus clementina HOM05D007885 ORTHO05D010052 4.3e-14 81.3 82 57.3
HanXRQChr15g0465371 Helianthus annuus HOM05D007885 ORTHO05D010052 4.3e-14 81.3 65 67.7
Aqoxy3G02001 Aquilegia oxysepala HOM05D007885 ORTHO05D010052 5.6e-14 80.9 64 65.6
Gohir.A13G081900 Gossypium hirsutum HOM05D007885 ORTHO05D010052 5.6e-14 80.9 80 56.2
Gohir.D13G100200 Gossypium hirsutum HOM05D007885 ORTHO05D010052 5.6e-14 80.9 80 56.2
PGSC0003DMG400025196 Solanum tuberosum HOM05D007885 ORTHO05D010052 5.6e-14 80.9 66 65.2
ClCG06G008190 Citrullus lanatus HOM05D007885 ORTHO05D010052 7.3e-14 80.5 89 52.8
Migut.B01442 Erythranthe guttata HOM05D007885 ORTHO05D010052 7.3e-14 80.5 80 57.5
Gorai.013G112400 Gossypium raimondii HOM05D007885 ORTHO05D010052 9.6e-14 80.1 80 56.2
Oeu026138.2 Olea europaea HOM05D007885 ORTHO05D010052 9.6e-14 80.1 75 58.7
CsaV3_2G010950 Cucumis sativus L. HOM05D007885 ORTHO05D010052 1.2e-13 79.7 89 55.1
Peaxi162Scf01343g00147 Petunia axillaris HOM05D007885 ORTHO05D010052 1.2e-13 79.7 83 55.4
MELO3C020379.2 Cucumis melo HOM05D007885 ORTHO05D010052 2.1e-13 79.0 89 55.1
Duzib177G0659 Durio zibethinus HOM05D007885 ORTHO05D010052 3.6e-13 78.2 80 53.8
unitig_8.g3853 Utricularia gibba HOM05D007033 ORTHO05D008770 3.6e-13 78.2 88 51.1
Sc23g0004750 Simmondsia chinensis HOM05D007885 ORTHO05D010052 6.2e-13 77.4 93 50.5
TAR629G0995 Trochodendron aralioides HOM05D007885 ORTHO05D010052 8.1e-13 77.0 80 56.2
Actinidia05823 Actinidia chinensis HOM05D007885 ORTHO05D010052 1.1e-12 76.6 64 64.1
ECA246G2713 Erigeron canadensis HOM05D007885 ORTHO05D010052 1.4e-12 76.3 63 66.7
Manes.08G157500 Manihot esculenta HOM05D007885 ORTHO05D010052 1.8e-12 75.9 83 56.6
Lj6g0000644 Lotus japonicus HOM05D007885 ORTHO05D010052 5.3e-12 74.3 66 60.6
Nn1g02087 Nelumbo nucifera HOM05D007885 ORTHO05D010052 5.3e-12 74.3 63 65.1
FvH4_7g07270 Fragaria vesca HOM05D007885 ORTHO05D010052 1.5e-11 72.8 62 66.1
Psat1g169600 Pisum sativum HOM05D007885 ORTHO05D010052 1.5e-11 72.8 68 60.3
Aa31LG9G17960 Aethionema arabicum HOM05D007885 ORTHO05D010052 3.4e-11 71.6 77 49.4
FvH4_7g07330 Fragaria vesca HOM05D007885 ORTHO05D010052 4.4e-11 71.2 51 68.6
Cc02_g26380 Coffea canephora HOM05D007885 ORTHO05D010052 7.6e-11 70.5 59 61.0
RcHm_v2.0_Chr0c29g0501081 Rosa chinensis HOM05D007885 ORTHO05D010052 9.9e-11 70.1 74 54.1
arahy.Tifrunner.gnm1.ann1.4X2HTN Arachis hypogaea HOM05D007885 ORTHO05D010052 1.3e-10 69.7 73 54.8
AUR62038019 Chenopodium quinoa HOM05D007885 ORTHO05D010052 1.3e-10 69.7 84 51.2
Glyma.15G127300 Glycine max HOM05D007885 ORTHO05D010052 1.3e-10 69.7 84 50.0
Eucgr.E01767 Eucalyptus grandis HOM05D007885 ORTHO05D010052 1.7e-10 69.3 68 52.9
Medtr2g029000 Medicago truncatula HOM05D007885 ORTHO05D010052 1.7e-10 69.3 66 59.1
CDE02G4204 Ceratophyllum demersum HOM05D007885 ORTHO05D010052 8.4e-10 67.0 88 45.5
Phvul.006G131300 Phaseolus vulgaris HOM05D007885 ORTHO05D010052 8.4e-10 67.0 79 49.4
HPP92_008354 Vanilla planifolia HOM05D007885 ORTHO05D010052 8.4e-10 67.0 84 47.6
Ah.05g177170 Amaranthus hybridus HOM05D007885 ORTHO05D010052 1.1e-09 66.6 85 50.6
Zm00001eb306480 Zea mays HOM05D007885 ORTHO05D010052 1.4e-09 66.2 85 48.2
FAN01G2012 Fragaria x ananassa HOM05D007885 ORTHO05D010052 3.2e-09 65.1 67 59.7
RcHm_v2.0_Chr1g0337851 Rosa chinensis HOM05D007885 ORTHO05D010052 3.2e-09 65.1 68 55.9
TPR.G17523 Trifolium pratense HOM05D007885 ORTHO05D010052 3.2e-09 65.1 64 56.2
CANSAT01G2257 Cannabis sativa HOM05D007885 ORTHO05D010052 4.2e-09 64.7 70 50.0
Sp1g36130 Schrenkiella parvula HOM05D007885 ORTHO05D010052 1.2e-08 63.2 77 48.1
C08p04310 Brassica napus HOM05D007885 ORTHO05D010052 1.3e-07 59.7 76 47.4
A08p04120 Brassica napus HOM05D007885 ORTHO05D010052 1.7e-07 59.3 76 47.4
BraA08t32437Z Brassica rapa HOM05D007885 ORTHO05D010052 1.7e-07 59.3 76 47.4
BcaC07g37071 Brassica carinata HOM05D007885 ORTHO05D010052 3.0e-07 58.5 76 46.1
AL1G56120 Arabidopsis lyrata HOM05D007885 ORTHO05D010052 3.9e-07 58.2 77 42.9
AL4G25080 Arabidopsis lyrata HOM05D007885 ORTHO05D010052 3.9e-07 58.2 77 42.9
Carub.0001s3844 Capsella rubella HOM05D007885 ORTHO05D010052 3.9e-07 58.2 80 48.8
AT1G49245 Arabidopsis thaliana HOM05D007885 ORTHO05D010052 5.1e-07 57.8 69 47.8
RcHm_v2.0_Chr0c29g0501131 Rosa chinensis HOM05D007885 ORTHO05D010052 6.6e-07 57.4 54 57.4
PSO063G1811 Papaver somniferum HOM05D007885 ORTHO05D010052 1.5e-06 56.2 63 44.4
PSO782G0684 Papaver somniferum HOM05D007885 ORTHO05D010052 1.9e-06 55.8 63 44.4
BolC8t47235H Brassica oleracea HOM05D007885 ORTHO05D010052 4.3e-06 54.7 76 43.4
BcaB04g17354 Brassica carinata HOM05D007885 ORTHO05D010052 5.6e-06 54.3 77 42.9
CARHR039250 Cardamine hirsuta HOM05D007885 ORTHO05D010052 9.6e-06 53.5 80 45.0


User provided reference genes

Program Settings