Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 2214.5 1077 100.0
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 1413.3 1067 66.7
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 1350.9 1064 64.1
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1298.1 1064 62.9
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 1233.0 1067 61.0
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 1221.5 1066 60.2
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 1208.7 1073 58.1
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 1206.8 1076 58.2
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1205.7 1074 58.5
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 1204.9 1070 59.1
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 1201.4 1068 58.8
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 0.0e+00 1190.3 1072 57.7
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 0.0e+00 1190.3 1072 57.7
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 1172.1 1069 57.6
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 1166.8 1069 57.2
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 1163.7 1070 57.2
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 1158.7 1069 56.8
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 1157.5 1069 56.1
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 1155.2 1079 55.7
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 1144.4 1070 56.3
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 1142.9 1072 55.0
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1137.1 1073 56.3
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 1135.6 1064 56.8
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 1130.9 1063 54.8
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1129.0 1071 55.0
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 1125.5 1064 54.4
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1125.2 1088 54.0
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 1124.8 1071 54.6
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 1124.0 1067 55.0
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 1122.8 1073 56.4
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 1118.2 1064 54.7
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 1113.6 1072 54.3
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 1113.2 1077 55.7
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 1110.1 1070 54.5
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1104.4 1070 54.3
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 1103.2 1068 54.4
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1103.2 1070 54.1
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1103.2 1070 54.4
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1103.2 1070 54.2
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1099.7 1070 54.3
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 1093.6 1069 55.4
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 7.5e-307 1057.4 1100 53.8
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 2.2e-306 1055.8 1069 52.5
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 5.4e-305 1051.2 1084 53.2
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 9.5e-302 1040.4 1072 51.2
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 1.0e-295 1020.4 1069 52.1
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 1.0e-295 1020.4 1072 51.4
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 3.0e-295 1018.8 1074 51.4
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 8.6e-295 1017.3 1066 50.8
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 8.6e-295 1017.3 1067 52.9
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 1.9e-294 1016.1 1065 50.7
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 7.3e-294 1014.2 1066 52.1
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 1.6e-293 1013.1 1067 52.9
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 2.8e-293 1012.3 1066 51.1
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 3.6e-293 1011.9 1068 53.1
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 1.4e-292 1010.0 1067 51.0
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 3.1e-292 1008.8 1068 51.0
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 2.9e-290 1002.3 1066 50.6
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 8.7e-287 990.7 1094 51.0
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 5.6e-286 988.0 1077 49.8
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 2.4e-284 982.6 1069 51.0
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 9.0e-284 980.7 1073 50.9
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 1.2e-283 980.3 1080 50.0
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 1.3e-282 976.9 1076 48.4
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 5.4e-281 971.5 1092 48.9
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 3.3e-278 962.2 1082 49.3
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 9.0e-276 954.1 1076 49.1
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 5.8e-275 951.4 1086 49.7
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 4.6e-272 941.8 1076 49.3
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 9.0e-268 927.5 1078 46.6
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 1.2e-267 927.2 1068 47.8
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 6.7e-263 911.4 1077 47.2
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 6.9e-260 901.4 1063 49.1
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 1.1e-257 894.0 1068 46.7
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 4.2e-257 892.1 1078 46.9
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 9.3e-257 891.0 1084 46.2
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 1.6e-256 890.2 1071 46.2
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 1.0e-255 887.5 1071 47.2
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 8.7e-255 884.4 1073 47.1
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 1.3e-253 880.6 1073 46.2
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 4.5e-251 872.1 1064 46.0
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 5.9e-251 871.7 1064 46.0
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 1.0e-250 870.9 1070 46.0
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 8.5e-250 867.8 1063 45.8
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 4.2e-249 865.5 1063 45.6
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 1.4e-244 850.5 1074 45.5
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 1.7e-237 827.0 1064 44.2
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 1.1e-236 824.3 1073 44.5
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 3.1e-220 769.6 1078 41.8
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 6.3e-213 745.3 1089 40.7
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 4.4e-206 722.6 528 68.0
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.7e-203 713.4 557 66.6
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.3e-202 710.3 581 59.9
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 6.8e-199 698.7 1076 39.5
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 2.8e-192 676.8 631 54.2
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 1.8e-167 594.3 1074 37.1
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 1.8e-143 514.6 462 53.0
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 1.6e-139 501.5 483 51.8
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 1.7e-125 454.9 1183 28.7
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 5.7e-97 360.1 224 76.8
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 3.0e-85 321.2 379 46.4
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 8.9e-82 309.7 808 30.3
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.7e-78 298.1 197 73.6
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 4.0e-74 284.3 179 72.6
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 5.8e-73 280.4 263 57.4
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 3.1e-66 258.1 532 33.1
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 7.6e-57 226.9 383 35.8
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.5e-52 212.6 413 38.0
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 5.4e-47 194.1 558 28.0
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 1.0e-45 189.9 120 73.3
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 5.6e-44 184.1 121 73.6
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 4.9e-40 171.0 113 73.5
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 9.3e-39 166.8 226 46.0
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.0e-33 149.1 506 26.1
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 3.8e-32 144.8 102 70.6
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 3.1e-26 125.2 75 77.3
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 2.2e-24 119.0 303 30.7
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 3.3e-20 105.1 499 24.4
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 4.3e-20 104.8 540 24.4
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 9.7e-20 103.6 117 50.4
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 9.1e-18 97.1 124 42.7
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.9e-16 92.0 199 31.7
arahy.Tifrunner.gnm1.ann1.63Q0V0 Arachis hypogaea HOM05D008137 ORTHO05D005103 7.2e-15 87.4 115 46.1
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 5.7e-12 77.8 48 68.8
Atru.chr5.687 Acer truncatum HOM05D002476 ORTHO05D002652 4.8e-11 74.7 57 70.2
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 4.8e-11 74.7 76 56.6
Psat0ss888g0080 Pisum sativum HOM05D004435 ORTHO05D005103 3.1e-10 72.0 99 40.4
Psat5g020760 Pisum sativum HOM05D004435 ORTHO05D005103 4.1e-10 71.6 80 47.5


User provided reference genes

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