Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A496T103 Lonicera japonica HOM05D000026 ORTHO05D008596 3.7e-111 404.8 197 100.0
CSS0047897 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D008596 4.1e-86 321.6 195 77.9
DCAR_006978 Daucus carota HOM05D000026 ORTHO05D008596 1.2e-85 320.1 196 77.6
RcHm_v2.0_Chr1g0360221 Rosa chinensis HOM05D000026 ORTHO05D008596 1.2e-85 320.1 196 80.1
vmacro12664 Vaccinium macrocarpon HOM05D000026 ORTHO05D008596 1.2e-85 320.1 198 78.3
Thecc.01G339500 Theobroma cacao HOM05D000026 ORTHO05D008596 3.5e-85 318.5 195 76.9
FAN10G3002 Fragaria x ananassa HOM05D000026 ORTHO05D008596 7.8e-85 317.4 196 78.1
CANSAT56G3067 Cannabis sativa HOM05D000026 ORTHO05D008596 1.0e-84 317.0 194 75.8
Hma1.2p1_0101F.1_g049143 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.3e-84 316.6 191 80.1
Hma1.2p1_2584F.1_g324880 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.3e-84 316.6 191 80.1
FvH4_7g16970 Fragaria vesca HOM05D000026 ORTHO05D008596 3.9e-84 315.1 196 78.1
FAN06G4713 Fragaria x ananassa HOM05D000026 ORTHO05D008596 3.9e-84 315.1 196 78.1
HanXRQChr16g0524761 Helianthus annuus HOM05D000026 ORTHO05D008596 3.9e-84 315.1 196 78.6
Lsat_1_v5_gn_4_30860 Lactuca sativa HOM05D000026 ORTHO05D008596 1.1e-83 313.5 196 77.6
Cc02_g39620 Coffea canephora HOM05D000026 ORTHO05D008596 1.9e-83 312.8 196 76.5
Cfa003780 Carpinus fangiana HOM05D000026 ORTHO05D008596 2.5e-83 312.4 195 77.9
FAN06G2200 Fragaria x ananassa HOM05D000026 ORTHO05D008596 2.5e-83 312.4 195 77.4
MBI04_g28825_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D008596 2.5e-83 312.4 194 75.8
GSVIVG01027181001 Vitis vinifera HOM05D000026 ORTHO05D008596 2.5e-83 312.4 192 76.6
Aqoxy5G04296 Aquilegia oxysepala HOM05D000026 ORTHO05D008596 4.3e-83 311.6 198 76.3
Prupe.2G192000 Prunus persica HOM05D000026 ORTHO05D008596 2.8e-82 308.9 196 76.0
Gohir.A07G136500 Gossypium hirsutum HOM05D000026 ORTHO05D008596 6.2e-82 307.8 196 76.0
Gohir.D07G141900 Gossypium hirsutum HOM05D000026 ORTHO05D008596 8.9e-81 303.9 196 75.0
Gorai.001G153500 Gossypium raimondii HOM05D000026 ORTHO05D008596 8.9e-81 303.9 196 75.0
Potri.014G100700 Populus trichocarpa HOM05D000026 ORTHO05D008596 5.8e-80 301.2 193 74.6
FAN01G2684 Fragaria x ananassa HOM05D000026 ORTHO05D008596 7.5e-80 300.8 214 71.0
Atru.chr5.703 Acer truncatum HOM05D000026 ORTHO05D008596 9.9e-80 300.4 195 75.4
PGR031G0964 Punica granatum HOM05D000026 ORTHO05D008596 1.3e-79 300.1 196 74.0
QL08p045855 Quercus lobata HOM05D000026 ORTHO05D008596 1.3e-79 300.1 191 77.0
Cpa.g.sc96.56 Carica papaya HOM05D000026 ORTHO05D008596 1.7e-79 299.7 194 73.7
Manes.05G020900 Manihot esculenta HOM05D000026 ORTHO05D008596 4.9e-79 298.1 195 72.3
arahy.Tifrunner.gnm1.ann1.HRQ3AE Arachis hypogaea HOM05D000026 ORTHO05D008596 6.4e-79 297.7 197 72.6
ECA234G0680 Erigeron canadensis HOM05D000026 ORTHO05D008596 1.1e-78 297.0 197 74.1
Hund27184 Selenicereus undatus HOM05D000026 ORTHO05D008596 1.4e-78 296.6 192 71.9
Potri.002G173800 Populus trichocarpa HOM05D000026 ORTHO05D008596 4.1e-78 295.0 192 71.9
TWI23G0686 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 4.1e-78 295.0 196 70.9
Nitab4.5_0000258g0260 Nicotiana tabacum HOM05D000026 ORTHO05D008596 5.4e-78 294.7 196 71.9
Lj3g0003520 Lotus japonicus HOM05D000026 ORTHO05D008596 9.2e-78 293.9 197 72.1
arahy.Tifrunner.gnm1.ann1.CN1679 Arachis hypogaea HOM05D000026 ORTHO05D008596 1.2e-77 293.5 197 71.6
MSTRG.28272 Avicennia marina HOM05D000026 ORTHO05D008596 1.6e-77 293.1 196 70.9
TWI59G0194 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 6.0e-77 291.2 200 70.0
TPR.G20231 Trifolium pratense HOM05D000026 ORTHO05D008596 7.8e-77 290.8 190 73.7
MD01G1084300 Malus domestica HOM05D000026 ORTHO05D008596 1.0e-76 290.4 196 71.4
Ca_23515_v3 Cicer arietinum L. HOM05D000026 ORTHO05D008596 1.7e-76 289.7 195 71.8
EL10Ac1g00239 Beta vulgaris HOM05D000026 ORTHO05D008596 3.0e-76 288.9 192 69.8
Phvul.010G115400 Phaseolus vulgaris HOM05D000026 ORTHO05D008596 3.0e-76 288.9 197 69.5
TAR629G1880 Trochodendron aralioides HOM05D000026 ORTHO05D008596 3.0e-76 288.9 196 69.9
Lalb_Chr10g0100681 Lupinus albus HOM05D000026 ORTHO05D008596 3.9e-76 288.5 197 69.5
Eucgr.D02387 Eucalyptus grandis HOM05D000026 ORTHO05D008596 6.6e-76 287.7 196 71.9
Glyma.16G023100 Glycine max HOM05D000026 ORTHO05D008596 6.6e-76 287.7 197 72.1
VMungo0331G1134 Vigna mungo HOM05D000026 ORTHO05D008596 1.1e-75 287.0 197 70.6
Carub.0004s2930 Capsella rubella HOM05D000026 ORTHO05D008596 3.3e-75 285.4 194 69.1
Medtr8g027365 Medicago truncatula HOM05D000026 ORTHO05D008596 5.6e-75 284.6 197 71.1
AL4G46010 Arabidopsis lyrata HOM05D000026 ORTHO05D008596 1.2e-74 283.5 194 68.6
Migut.N01531 Erythranthe guttata HOM05D000026 ORTHO05D008596 2.1e-74 282.7 197 71.1
PSO063G7217 Papaver somniferum HOM05D000026 ORTHO05D008596 3.6e-74 282.0 194 68.0
AT2G46580 Arabidopsis thaliana HOM05D000026 ORTHO05D008596 6.2e-74 281.2 194 68.0
FAN10G2309 Fragaria x ananassa HOM05D000026 ORTHO05D000127 8.1e-74 280.8 169 79.9
Thhalv10001639m.g Eutrema salsugineum HOM05D000026 ORTHO05D008596 1.1e-73 280.4 196 67.3
SGA_v2.0_scaffold232G43545 Striga asiatica HOM05D000026 ORTHO05D008596 1.8e-73 279.6 196 67.9
Ciclev10022329m.g Citrus clementina HOM05D000026 ORTHO05D008596 5.2e-73 278.1 194 68.6
CAN.G360.5 Capsicum annuum HOM05D000026 ORTHO05D008596 1.5e-72 276.6 183 72.7
CARHR141930 Cardamine hirsuta HOM05D000026 ORTHO05D008596 5.8e-72 274.6 194 66.5
A04p34480 Brassica napus HOM05D000026 ORTHO05D008596 1.7e-71 273.1 196 65.3
BraA04t18906Z Brassica rapa HOM05D000026 ORTHO05D008596 1.7e-71 273.1 196 65.3
Solyc05g050530.3 Solanum lycopersicum HOM05D000026 ORTHO05D008596 1.7e-71 273.1 183 71.6
Sopen05g028950 Solanum pennellii HOM05D000026 ORTHO05D008596 1.7e-71 273.1 183 71.6
COL.COLO4_06235 Corchorus olitorius HOM05D000026 ORTHO05D008596 2.9e-71 272.3 163 79.1
Duzib133G0719 Durio zibethinus HOM05D000026 ORTHO05D008596 4.9e-71 271.6 162 79.6
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 1.9e-70 269.6 196 64.8
THA.LOC104827623 Tarenaya hassleriana HOM05D000026 ORTHO05D008596 5.4e-70 268.1 193 65.8
BcaC02g07019 Brassica carinata HOM05D000026 ORTHO05D008596 9.3e-70 267.3 196 64.3
Dinv32607 Davidia involucrata HOM05D000026 ORTHO05D008596 1.6e-69 266.5 156 80.1
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 4.6e-69 265.0 196 66.8
Sp4g28630 Schrenkiella parvula HOM05D000026 ORTHO05D008596 4.6e-69 265.0 192 65.1
BcaC02g07042 Brassica carinata HOM05D000026 ORTHO05D008596 6.0e-69 264.6 192 65.1
unitig_21.g20560 Utricularia gibba HOM05D000026 ORTHO05D008596 7.8e-69 264.2 196 66.3
MELO3C006011.2 Cucumis melo HOM05D000026 ORTHO05D008596 1.7e-68 263.1 196 63.3
CsaV3_3G007930 Cucumis sativus L. HOM05D000026 ORTHO05D008596 6.6e-68 261.2 194 62.4
Sed0016971 Sechium edule HOM05D000026 ORTHO05D008596 2.5e-67 259.2 196 60.2
Os03g0115500 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D008596 3.3e-67 258.8 192 61.5
AUR62004514 Chenopodium quinoa HOM05D000026 ORTHO05D008596 6.2e-66 254.6 169 68.6
Nitab4.5_0003865g0100 Nicotiana tabacum HOM05D000026 ORTHO05D008596 8.1e-66 254.2 196 65.3
PGSC0003DMG400007008 Solanum tuberosum HOM05D000026 ORTHO05D008596 6.9e-65 251.1 163 73.6
SEGI_21315 Sequoiadendron giganteum HOM05D000026 ORTHO05D008596 9.0e-65 250.8 196 58.2
Rhsim01G0174600 Rhododendron simsii HOM05D000026 ORTHO05D008596 1.5e-64 250.0 197 63.5
CiPaw.01G078200 Carya illinoinensis HOM05D000026 ORTHO05D008596 3.4e-64 248.8 167 70.1
Zm00001eb001050 Zea mays HOM05D000026 ORTHO05D008596 3.4e-64 248.8 195 59.0
FAN03G0355 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.1e-62 243.8 166 72.9
Aa31LG1G27980 Aethionema arabicum HOM05D000026 ORTHO05D008596 7.1e-62 241.1 165 66.7
Actinidia28110 Actinidia chinensis HOM05D000026 ORTHO05D008596 1.2e-61 240.4 162 72.8
PSO170G4931 Papaver somniferum HOM05D000026 ORTHO05D008596 5.6e-59 231.5 194 60.3
BcaNung06661 Brassica carinata HOM05D000026 ORTHO05D008596 4.8e-58 228.4 196 58.7
Mapoly0085s0082 Marchantia polymorpha HOM05D000026 ORTHO05D008596 3.1e-57 225.7 198 55.1
Hma1.2p1_0101F.1_g049146 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 3.4e-56 222.2 133 78.2
Hma1.2p1_2584F.1_g324890 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 3.4e-56 222.2 133 78.2
BolC4t28712H Brassica oleracea HOM05D000026 ORTHO05D008596 3.8e-55 218.8 218 51.8
Oeu004961.1 Olea europaea HOM05D000026 ORTHO05D008596 2.4e-54 216.1 132 75.0
Pp3c7_90 Physcomitrium patens HOM05D000026 ORTHO05D008596 1.2e-53 213.8 197 49.2
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 1.8e-52 209.9 195 50.8
Nn1g00327 Nelumbo nucifera HOM05D000026 ORTHO05D008596 4.8e-50 201.8 197 54.3
Peaxi162Scf00716g00425 Petunia axillaris HOM05D000026 ORTHO05D008596 8.4e-47 191.0 195 51.3
SMO119G0236 Selaginella moellendorffii HOM05D000026 ORTHO05D008596 1.9e-46 189.9 192 48.4
Sabra14G0074100 Salix brachista HOM05D000026 ORTHO05D008596 2.7e-45 186.0 173 55.5
Sc01g0002470 Simmondsia chinensis HOM05D000026 ORTHO05D008596 4.3e-43 178.7 106 77.4
Hma1.2p1_0101F.1_g049160 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 6.1e-37 158.3 92 81.5
ClCG05G000710 Citrullus lanatus HOM05D000026 ORTHO05D008596 1.5e-35 153.7 266 37.6
Actinidia28403 Actinidia chinensis HOM05D000026 ORTHO05D008596 9.7e-35 151.0 81 84.0
CBR_g3312 Chara braunii HOM05D000026 ORTHO05D008596 3.4e-32 142.5 220 38.2
AUR62022739 Chenopodium quinoa HOM05D000026 ORTHO05D008596 1.4e-28 130.6 92 65.2
HPP92_015098 Vanilla planifolia HOM05D000026 ORTHO05D008596 5.7e-27 125.2 111 56.8
MCO05G651 Micromonas commoda HOM05D000026 ORTHO05D008596 3.4e-24 115.9 183 35.0
ATR0757G161 Amborella trichopoda HOM05D000026 ORTHO05D008596 2.2e-23 113.2 70 74.3
Sabra02G0139600 Salix brachista HOM05D000026 ORTHO05D008596 1.4e-20 104.0 70 71.4
PRCOL_00000497 Prasinoderma coloniale HOM05D000026 ORTHO05D008596 8.2e-18 94.7 230 33.0
Cre02.g095100 Chlamydomonas reinhardtii HOM05D000026 ORTHO05D008596 2.1e-13 80.1 133 32.3
Zm00001eb244850 Zea mays HOM05D017471 ORTHO05D012887 2.6e-11 73.2 58 58.6
Haze_15680 Corylus avellana HOM05D000026 ORTHO05D008596 5.7e-11 72.0 43 81.4
TAR636G3419 Trochodendron aralioides HOM05D000026 ORTHO05D008596 5.7e-11 72.0 62 58.1
Zm00001eb123990 Zea mays HOM05D000026 ORTHO05D012887 3.7e-10 69.3 57 57.9
Hund19453 Selenicereus undatus HOM05D004066 ORTHO05D008596 4.8e-10 68.9 53 62.3


User provided reference genes

Program Settings