Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 6.9e-96 354.0 181 100.0
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 1.1e-80 303.5 174 87.4
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 4.5e-79 298.1 178 84.8
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 5.0e-78 294.7 178 83.7
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 5.0e-78 294.7 178 83.7
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 6.5e-78 294.3 177 85.9
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 1.9e-77 292.7 175 84.0
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 3.2e-77 292.0 178 80.9
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 5.5e-77 291.2 179 81.6
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 9.4e-77 290.4 178 80.9
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 1.2e-76 290.0 178 80.9
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 1.6e-76 289.7 178 80.9
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 1.6e-76 289.7 177 81.9
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 4.7e-76 288.1 177 81.4
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 6.1e-76 287.7 178 82.0
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 7.9e-76 287.3 178 82.6
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 7.9e-76 287.3 178 80.9
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 1.0e-75 287.0 177 81.9
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 3.0e-75 285.4 174 82.2
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 5.1e-75 284.6 179 81.0
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 1.5e-74 283.1 178 79.2
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 2.0e-74 282.7 172 83.1
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 2.0e-74 282.7 177 79.7
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 2.0e-74 282.7 178 80.9
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 3.3e-74 282.0 182 81.3
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 3.3e-74 282.0 177 79.7
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 4.4e-74 281.6 177 79.7
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 7.4e-74 280.8 178 80.9
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 1.7e-73 279.6 177 81.4
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.8e-73 278.9 181 81.8
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 3.7e-73 278.5 178 78.1
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 8.2e-73 277.3 176 77.3
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.1e-72 276.9 174 80.5
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 1.4e-72 276.6 178 77.0
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.4e-72 276.6 178 78.1
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 1.8e-72 276.2 175 80.6
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.8e-72 276.2 181 77.3
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 1.8e-72 276.2 178 78.1
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 2.4e-72 275.8 172 80.8
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 3.1e-72 275.4 169 81.7
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 4.1e-72 275.0 178 77.0
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 4.1e-72 275.0 178 79.2
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 4.1e-72 275.0 178 78.7
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 5.3e-72 274.6 178 78.1
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 7.0e-72 274.2 178 79.2
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 7.0e-72 274.2 181 77.3
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 1.2e-71 273.5 178 79.2
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 1.5e-71 273.1 177 79.7
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 1.5e-71 273.1 177 78.0
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 2.0e-71 272.7 178 77.0
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 2.0e-71 272.7 181 76.8
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 2.0e-71 272.7 178 78.7
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 2.6e-71 272.3 178 76.4
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 2.6e-71 272.3 178 79.2
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 3.5e-71 271.9 181 77.9
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 7.7e-71 270.8 178 77.0
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 1.0e-70 270.4 180 77.8
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 1.0e-70 270.4 169 81.1
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.3e-70 270.0 175 78.3
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.7e-70 269.6 178 75.3
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.7e-70 269.6 181 75.7
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.2e-70 269.2 181 75.7
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 2.2e-70 269.2 178 78.1
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.9e-70 268.9 178 77.0
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 3.8e-70 268.5 181 75.1
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 3.8e-70 268.5 178 77.5
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 3.8e-70 268.5 208 69.7
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 3.8e-70 268.5 181 74.6
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 3.8e-70 268.5 178 75.3
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 5.0e-70 268.1 175 77.1
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 5.0e-70 268.1 181 76.2
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 6.5e-70 267.7 180 77.2
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 8.5e-70 267.3 174 76.4
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 8.5e-70 267.3 178 76.4
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 8.5e-70 267.3 178 77.0
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 8.5e-70 267.3 178 76.4
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 1.4e-69 266.5 177 77.4
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 1.4e-69 266.5 177 75.7
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.4e-69 266.5 178 75.8
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.4e-69 266.5 178 77.0
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 1.4e-69 266.5 175 77.1
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 1.4e-69 266.5 177 76.8
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.9e-69 266.2 175 77.1
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.9e-69 266.2 178 77.0
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 1.9e-69 266.2 171 80.1
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 3.2e-69 265.4 181 75.1
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 3.2e-69 265.4 178 75.8
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 5.5e-69 264.6 176 74.4
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 7.2e-69 264.2 168 78.6
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 9.4e-69 263.8 178 76.4
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 1.6e-68 263.1 181 74.6
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 1.6e-68 263.1 178 77.0
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 1.6e-68 263.1 179 77.1
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 2.7e-68 262.3 175 75.4
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 3.6e-68 261.9 181 74.6
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 3.6e-68 261.9 181 74.0
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 3.6e-68 261.9 183 73.8
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 4.7e-68 261.5 181 74.6
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 8.0e-68 260.8 181 74.6
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 8.0e-68 260.8 177 76.8
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 8.0e-68 260.8 175 75.4
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 1.0e-67 260.4 181 74.0
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 1.0e-67 260.4 173 78.6
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 1.4e-67 260.0 178 76.4
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 1.4e-67 260.0 169 78.7
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 3.0e-67 258.8 175 73.1
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 8.8e-67 257.3 176 72.2
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 8.8e-67 257.3 175 74.9
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 1.1e-66 256.9 170 77.1
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.1e-66 256.9 222 65.8
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 1.3e-65 253.4 175 72.6
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 4.8e-65 251.5 175 77.1
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 4.1e-64 248.4 174 73.6
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 9.1e-64 247.3 160 76.9
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.6e-63 246.5 156 80.8
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 2.6e-63 245.7 172 74.4
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 7.7e-63 244.2 171 74.9
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 2.2e-62 242.7 180 68.3
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 3.8e-62 241.9 211 64.0
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 8.5e-62 240.7 170 72.4
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 9.4e-61 237.3 176 67.6
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 4.7e-60 235.0 177 70.1
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 3.3e-58 228.8 176 71.0
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 3.3e-58 228.8 150 79.3
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 9.7e-58 227.3 150 78.7
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 3.1e-56 222.2 146 77.4
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 4.5e-55 218.4 181 65.2
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 8.3e-49 197.6 120 85.0
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 3.5e-47 192.2 175 54.9
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 4.5e-47 191.8 170 64.1
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 5.9e-47 191.4 169 63.3
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.9e-45 186.4 129 76.0
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 9.5e-45 184.1 175 53.1
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 4.7e-44 181.8 170 53.5
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 2.3e-43 179.5 114 82.5
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 4.4e-42 175.3 117 76.1
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 8.3e-41 171.0 167 51.5
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 5.4e-40 168.3 165 51.5
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 5.6e-37 158.3 160 56.2
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 1.6e-36 156.8 160 51.9
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 6.1e-36 154.8 222 42.8
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 1.0e-35 154.1 86 87.2
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 1.2e-34 150.6 101 76.2
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.2e-34 150.6 198 49.0
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 1.5e-34 150.2 173 50.9
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 1.4e-32 143.7 83 83.1
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 2.0e-31 139.8 83 79.5
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 6.0e-31 138.3 163 47.2
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.3e-30 137.1 83 79.5
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.1e-28 129.8 95 69.5
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 1.4e-27 127.1 142 50.0
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 5.8e-26 121.7 92 66.3
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 4.9e-25 118.6 86 69.8
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 6.4e-25 118.2 99 63.6
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 8.3e-25 117.9 117 59.0
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 7.8e-23 111.3 75 77.3
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 3.6e-20 102.4 144 45.8
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 4.7e-20 102.1 87 62.1
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 3.9e-14 82.4 225 32.0
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 1.9e-13 80.1 76 56.6
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 2.5e-13 79.7 57 61.4
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 5.2e-11 72.0 159 35.2
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 1.9e-08 63.5 44 70.5
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 2.4e-08 63.2 85 48.2
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 4.2e-08 62.4 42 66.7


User provided reference genes

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