Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A459G65 Lonicera japonica HOM05D005968 ORTHO05D007158 3.6e-182 641.3 304 100.0
Dinv41378 Davidia involucrata HOM05D005968 ORTHO05D007158 9.0e-157 557.0 308 85.7
Hma1.2p1_0222F.1_g093590 Hydrangea macrophylla HOM05D005968 ORTHO05D007158 2.0e-156 555.8 314 85.4
HanXRQChr09g0245781 Helianthus annuus HOM05D005968 ORTHO05D007158 2.2e-155 552.4 305 84.9
Manes.14G143600 Manihot esculenta HOM05D005968 ORTHO05D007158 2.9e-155 552.0 305 86.2
CSS0021374 Camellia sinensis var. sinensis HOM05D005968 ORTHO05D007158 1.9e-154 549.3 308 85.4
Glyma.02G204100 Glycine max HOM05D005968 ORTHO05D007158 3.5e-153 545.0 308 83.1
Glyma.17G073700 Glycine max HOM05D005968 ORTHO05D007158 7.9e-153 543.9 308 83.4
CiPaw.15G168400 Carya illinoinensis HOM05D005968 ORTHO05D007158 1.0e-152 543.5 308 83.1
Nn8g39893 Nelumbo nucifera HOM05D005968 ORTHO05D007158 1.0e-152 543.5 308 83.1
Atru.chr7.47_Atru.chr7.48 Acer truncatum HOM05D005968 ORTHO05D007158 1.3e-152 543.1 306 84.0
Dinv42854 Davidia involucrata HOM05D005968 ORTHO05D007158 1.8e-152 542.7 307 84.4
ECA236G4418 Erigeron canadensis HOM05D005968 ORTHO05D007158 3.9e-152 541.6 305 83.3
Thecc.09G030600 Theobroma cacao HOM05D005968 ORTHO05D007158 3.9e-152 541.6 307 83.1
Potri.006G184300 Populus trichocarpa HOM05D005968 ORTHO05D007158 5.1e-152 541.2 305 83.9
MD02G1007400 Malus domestica HOM05D005968 ORTHO05D007158 8.7e-152 540.4 305 83.6
Prupe.7G263000 Prunus persica HOM05D005968 ORTHO05D007158 8.7e-152 540.4 308 82.8
MD15G1144700 Malus domestica HOM05D005968 ORTHO05D007158 1.1e-151 540.0 307 83.1
Gohir.D08G273400 Gossypium hirsutum HOM05D005968 ORTHO05D007158 1.9e-151 539.3 308 82.8
Gorai.004G291800 Gossypium raimondii HOM05D005968 ORTHO05D007158 2.5e-151 538.9 308 82.8
PGSC0003DMG400011184 Solanum tuberosum HOM05D005968 ORTHO05D007158 3.3e-151 538.5 308 82.5
Lj4g0027447 Lotus japonicus HOM05D005968 ORTHO05D007158 4.3e-151 538.1 308 81.5
CiPaw.16G111000 Carya illinoinensis HOM05D005968 ORTHO05D007158 5.7e-151 537.7 302 84.4
Duzib187G1838 Durio zibethinus HOM05D005968 ORTHO05D007158 7.4e-151 537.3 307 82.4
DCAR_019393 Daucus carota HOM05D005968 ORTHO05D007158 3.7e-150 535.0 308 80.8
SalBow1G6433 Salvia bowleyana HOM05D005968 ORTHO05D007158 1.1e-149 533.5 307 82.1
Nn2g12378 Nelumbo nucifera HOM05D005968 ORTHO05D007158 2.4e-149 532.3 308 82.1
QL02p093270 Quercus lobata HOM05D005968 ORTHO05D007158 2.4e-149 532.3 307 81.4
Migut.K00326 Erythranthe guttata HOM05D005968 ORTHO05D007158 6.9e-149 530.8 305 81.0
FAN23G3092 Fragaria x ananassa HOM05D005968 ORTHO05D007158 6.9e-149 530.8 306 81.4
CANSAT11G2689 Cannabis sativa HOM05D005968 ORTHO05D007158 1.5e-148 529.6 308 80.8
FAN26G1763 Fragaria x ananassa HOM05D005968 ORTHO05D007158 2.0e-148 529.3 306 82.0
Potri.018G106700 Populus trichocarpa HOM05D005968 ORTHO05D007158 2.0e-148 529.3 305 81.6
Ciclev10008980m.g Citrus clementina HOM05D005968 ORTHO05D007158 2.6e-148 528.9 306 81.0
Psat0s2403g0360 Pisum sativum HOM05D005968 ORTHO05D007158 2.6e-148 528.9 298 84.2
FvH4_1g00920 Fragaria vesca HOM05D005968 ORTHO05D007158 4.5e-148 528.1 307 81.4
Gohir.A08G251800 Gossypium hirsutum HOM05D005968 ORTHO05D007158 4.5e-148 528.1 306 82.4
PSO561G0082 Papaver somniferum HOM05D005968 ORTHO05D007158 5.9e-148 527.7 305 82.6
PSO111G0029 Papaver somniferum HOM05D005968 ORTHO05D007158 1.7e-147 526.2 305 82.3
TAR626G1902 Trochodendron aralioides HOM05D005968 ORTHO05D007158 6.5e-147 524.2 304 82.6
Cfa020826 Carpinus fangiana HOM05D002374 ORTHO05D003594 8.5e-147 523.9 295 83.1
Eucgr.C02493 Eucalyptus grandis HOM05D005968 ORTHO05D007158 8.5e-147 523.9 308 79.5
arahy.Tifrunner.gnm1.ann1.D6JQQQ Arachis hypogaea HOM05D005968 ORTHO05D007158 1.1e-146 523.5 307 81.8
EL10Ac8g18668 Beta vulgaris HOM05D005968 ORTHO05D007158 7.2e-146 520.8 308 81.5
Lsat_1_v5_gn_8_63401 Lactuca sativa HOM05D005968 ORTHO05D007158 7.2e-146 520.8 304 82.2
DCAR_017911 Daucus carota HOM05D005968 ORTHO05D007158 5.1e-144 514.6 314 78.3
Peaxi162Scf00401g00718 Petunia axillaris HOM05D005968 ORTHO05D007158 2.0e-143 512.7 307 79.8
VMungo1215G2113 Vigna mungo HOM05D005968 ORTHO05D007158 2.0e-143 512.7 307 78.8
Zm00001eb086780 Zea mays HOM05D005968 ORTHO05D007158 2.5e-143 512.3 306 78.8
Sp7g28770 Schrenkiella parvula HOM05D005968 ORTHO05D007158 4.3e-143 511.5 314 76.4
Aqoxy2G01962_Aqoxy2G01963 Aquilegia oxysepala HOM05D005968 ORTHO05D007158 5.7e-143 511.1 313 78.6
Sed0018428 Sechium edule HOM05D005968 ORTHO05D007158 1.7e-142 509.6 309 79.0
Thhalv10025727m.g Eutrema salsugineum HOM05D005968 ORTHO05D007158 3.7e-142 508.4 303 78.5
Ca_21128_v3 Cicer arietinum L. HOM05D005968 ORTHO05D007158 8.2e-142 507.3 307 79.8
Zm00001eb420110 Zea mays HOM05D005968 ORTHO05D007158 1.4e-141 506.5 306 78.1
THA.LOC104803560 Tarenaya hassleriana HOM05D005968 ORTHO05D007158 1.8e-141 506.1 304 78.9
Carub.0007s0964 Capsella rubella HOM05D005968 ORTHO05D007158 2.4e-141 505.8 314 76.1
AL7G21190 Arabidopsis lyrata HOM05D005968 ORTHO05D007158 4.5e-140 501.5 303 76.9
AT4G30900 Arabidopsis thaliana HOM05D005968 ORTHO05D007158 7.7e-140 500.7 314 75.2
CARHR238800 Cardamine hirsuta HOM05D005968 ORTHO05D007158 1.0e-139 500.4 302 77.2
Sabra06G0140100 Salix brachista HOM05D005968 ORTHO05D007158 1.7e-139 499.6 406 63.5
BolC1t00793H Brassica oleracea HOM05D005968 ORTHO05D007158 5.0e-139 498.0 308 76.6
BcaC09g51877 Brassica carinata HOM05D005968 ORTHO05D007158 1.1e-138 496.9 308 76.3
A01p07280 Brassica napus HOM05D005968 ORTHO05D007158 1.1e-138 496.9 308 76.3
BraA01t00677Z Brassica rapa HOM05D005968 ORTHO05D007158 1.1e-138 496.9 308 76.3
Sabra18G0090900 Salix brachista HOM05D005968 ORTHO05D007158 1.9e-138 496.1 357 68.3
BcaNung03430 Brassica carinata HOM05D005968 ORTHO05D007158 9.4e-138 493.8 302 75.8
C01p08040 Brassica napus HOM05D005968 ORTHO05D007158 9.4e-138 493.8 308 76.0
Phvul.003G156000 Phaseolus vulgaris HOM05D005968 ORTHO05D007158 1.0e-128 463.8 260 82.7
SEGI_19747 Sequoiadendron giganteum HOM05D005968 ORTHO05D007158 3.0e-128 462.2 313 72.2
Actinidia38673 Actinidia chinensis HOM05D005968 ORTHO05D007158 5.7e-127 458.0 268 82.1
COL.COLO4_18810 Corchorus olitorius HOM05D000238 ORTHO05D007158 2.4e-125 452.6 294 74.5
TWI34G0179 Tripterygium wilfordii HOM05D005968 ORTHO05D007158 5.9e-124 448.0 305 71.5
PGR102G1528 Punica granatum HOM05D005968 ORTHO05D007158 1.7e-123 446.4 263 81.4
AUR62029822 Chenopodium quinoa HOM05D005968 ORTHO05D007158 3.8e-123 445.3 259 81.5
unitig_52.g17565 Utricularia gibba HOM05D005968 ORTHO05D007158 7.2e-122 441.0 327 65.7
ATR0739G020 Amborella trichopoda HOM05D005968 ORTHO05D007158 8.0e-121 437.6 302 70.2
AUR62006466 Chenopodium quinoa HOM05D005968 ORTHO05D007158 3.7e-118 428.7 246 82.1
CsaV3_1G028970 Cucumis sativus L. HOM05D005968 ORTHO05D007158 1.4e-117 426.8 308 68.5
SGA_v2.0_scaffold347G49545 Striga asiatica HOM05D005968 ORTHO05D007158 7.2e-106 387.9 343 59.2
Mapoly0088s0077 Marchantia polymorpha HOM05D005968 ORTHO05D007158 9.5e-106 387.5 308 58.8
Nitab4.5_0003623g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 1.3e-99 367.1 303 62.7
Lsat_1_v5_gn_7_66900 Lactuca sativa HOM05D005968 ORTHO05D007158 5.0e-91 338.6 256 68.4
GSVIVG01023606001 Vitis vinifera HOM05D005968 ORTHO05D007158 8.6e-91 337.8 165 92.1
Lalb_Chr12g0198711 Lupinus albus HOM05D005968 ORTHO05D007158 2.1e-89 333.2 165 91.5
CAN.G160.61 Capsicum annuum HOM05D005968 ORTHO05D007158 2.8e-89 332.8 165 92.1
Oeu038140.1 Olea europaea HOM05D005968 ORTHO05D007158 2.8e-89 332.8 166 91.0
Cc06_g14950 Coffea canephora HOM05D005968 ORTHO05D007158 6.2e-89 331.6 165 93.3
Nitab4.5_0009876g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 6.2e-89 331.6 173 87.9
TPR.G24830 Trifolium pratense HOM05D005968 ORTHO05D007158 1.4e-88 330.5 165 91.5
Sopen07g001720 Solanum pennellii HOM05D005968 ORTHO05D007158 1.2e-87 327.4 165 90.3
MSTRG.26272 Avicennia marina HOM05D005968 ORTHO05D007158 2.0e-87 326.6 166 89.8
RcHm_v2.0_Chr2g0085611 Rosa chinensis HOM05D005968 ORTHO05D007158 2.6e-87 326.2 165 87.9
Cpa.g.sc46.157 Carica papaya HOM05D005968 ORTHO05D007158 7.5e-87 324.7 163 89.6
Medtr4g130830 Medicago truncatula HOM05D005968 ORTHO05D007158 1.4e-85 320.5 165 89.1
Eucgr.C02540 Eucalyptus grandis HOM05D005968 ORTHO05D007158 1.9e-85 320.1 165 86.7
FAN28G0447 Fragaria x ananassa HOM05D005968 ORTHO05D007158 4.1e-85 318.9 164 86.6
Sc17g0006690 Simmondsia chinensis HOM05D005968 ORTHO05D007158 2.1e-84 316.6 160 90.0
Lsat_1_v5_gn_4_18721 Lactuca sativa HOM05D005968 ORTHO05D007158 1.3e-83 313.9 170 84.1
vmacro06082 Vaccinium macrocarpon HOM05D005968 ORTHO05D007158 6.8e-80 301.6 182 79.1
AagrBONN_evm.TU.Sc2ySwM_362.192 Anthoceros agrestis HOM05D005968 ORTHO05D007158 4.3e-74 282.3 248 53.2
Haze_19205 Corylus avellana HOM05D005968 ORTHO05D007158 2.1e-73 280.0 138 89.9
CiPaw.15G168700 Carya illinoinensis HOM05D005968 ORTHO05D007158 1.2e-71 274.2 186 74.7
RhsimUnG0158300 Rhododendron simsii HOM05D005968 ORTHO05D001263 9.6e-58 228.0 122 83.6
Cc06_g14960 Coffea canephora HOM05D005968 ORTHO05D007158 1.1e-56 224.6 134 79.9
Dinv43246 Davidia involucrata HOM05D005968 ORTHO05D007158 2.4e-56 223.4 126 84.9
Sopen07g001730 Solanum pennellii HOM05D005968 ORTHO05D007158 9.0e-56 221.5 126 82.5
Oeu038141.1 Olea europaea HOM05D005968 ORTHO05D007158 1.2e-55 221.1 127 81.1
Lalb_Chr12g0198701 Lupinus albus HOM05D005968 ORTHO05D007158 1.5e-55 220.7 125 83.2
Solyc07g005620.2 Solanum lycopersicum HOM05D005968 ORTHO05D007158 2.0e-55 220.3 126 81.7
TPR.G24874 Trifolium pratense HOM05D005968 ORTHO05D007158 9.9e-55 218.0 125 80.8
GSVIVG01023605001 Vitis vinifera HOM05D005968 ORTHO05D007158 1.3e-54 217.6 126 82.5
RcHm_v2.0_Chr2g0085621 Rosa chinensis HOM05D005968 ORTHO05D007158 6.4e-54 215.3 139 74.8
Medtr4g130840 Medicago truncatula HOM05D005968 ORTHO05D007158 1.1e-53 214.5 125 79.2
TAR636G1721 Trochodendron aralioides HOM05D005968 ORTHO05D007158 1.9e-53 213.8 102 92.2
MELO3C010224.2 Cucumis melo HOM05D005968 ORTHO05D007158 1.1e-50 204.5 125 80.0
HPP92_004698 Vanilla planifolia HOM05D005968 ORTHO05D007158 1.5e-50 204.1 127 79.5
ClCG06G012410 Citrullus lanatus HOM05D005968 ORTHO05D007158 7.4e-50 201.8 125 78.4
Os05g0279600 Oryza sativa ssp. japonica HOM05D005968 ORTHO05D007158 9.6e-50 201.4 128 75.0
Cpa.g.sc46.156 Carica papaya HOM05D005968 ORTHO05D007158 4.8e-49 199.1 146 67.8
HPP92_004697 Vanilla planifolia HOM05D005968 ORTHO05D007158 1.1e-48 198.0 101 85.1
Aa31LG2G19470 Aethionema arabicum HOM05D005968 ORTHO05D007158 4.2e-45 186.0 117 74.4
arahy.Tifrunner.gnm1.ann1.4WLG0J Arachis hypogaea HOM05D005968 ORTHO05D007158 1.9e-34 150.6 242 38.0
arahy.Tifrunner.gnm1.ann1.HW7BNQ Arachis hypogaea HOM05D005968 ORTHO05D007158 6.9e-32 142.1 69 94.2
Lsat_1_v5_gn_4_18741 Lactuca sativa HOM05D005968 ORTHO05D007158 2.0e-31 140.6 81 79.0
CDE04G1812 Ceratophyllum demersum HOM05D005968 ORTHO05D007158 3.8e-30 136.3 89 70.8
TAR636G0142 Trochodendron aralioides HOM05D002374 ORTHO05D003594 1.1e-26 124.8 69 82.6
Nitab4.5_0006121g0010 Nicotiana tabacum HOM05D005968 ORTHO05D007158 1.5e-26 124.4 66 87.9
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 3.3e-18 96.7 52 82.7
Eucgr.C02541 Eucalyptus grandis HOM05D005968 ORTHO05D007158 6.3e-17 92.4 71 66.2
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 9.4e-13 78.6 41 82.9
arahy.Tifrunner.gnm1.ann1.QXT71M Arachis hypogaea HOM05D005968 ORTHO05D007158 8.0e-12 75.5 43 79.1
arahy.Tifrunner.gnm1.ann1.VCSM30 Arachis hypogaea HOM05D005968 ORTHO05D007158 6.7e-11 72.4 44 75.0
arahy.Tifrunner.gnm1.ann1.HGKJ8P Arachis hypogaea HOM05D005968 ORTHO05D007158 5.3e-08 62.8 41 68.3
Oeu038782.2 Olea europaea HOM05D005968 ORTHO05D007158 2.7e-07 60.5 46 63.0


User provided reference genes

Program Settings