Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 5.1e-176 620.9 302 100.0
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 2.0e-119 433.0 297 71.4
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.1e-114 417.2 296 69.9
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 1.8e-112 409.8 323 64.1
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 3.0e-112 409.1 274 70.4
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 5.1e-112 408.3 299 66.2
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 2.6e-111 406.0 297 66.0
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 4.4e-111 405.2 299 63.9
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 7.4e-111 404.4 274 70.1
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 9.7e-111 404.1 282 68.8
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 1.8e-109 399.8 297 66.0
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 2.4e-109 399.4 299 65.2
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 7.0e-109 397.9 299 63.5
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 1.5e-108 396.7 299 63.9
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 2.0e-108 396.4 300 65.7
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 1.0e-107 394.0 297 64.0
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 1.0e-107 394.0 300 65.0
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 1.3e-107 393.7 299 64.2
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 1.3e-107 393.7 303 64.7
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 2.2e-107 392.9 310 62.9
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 2.2e-107 392.9 302 62.9
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 8.5e-107 391.0 300 63.7
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 1.1e-106 390.6 299 63.2
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 1.1e-106 390.6 299 62.9
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 1.1e-106 390.6 299 62.9
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 2.5e-106 389.4 297 63.3
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 7.2e-106 387.9 297 63.6
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 2.7e-105 386.0 299 64.9
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 6.1e-105 384.8 299 64.9
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 1.0e-104 384.0 312 60.3
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 1.0e-104 384.0 312 60.3
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 2.6e-103 379.4 292 63.7
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 2.2e-102 376.3 283 63.6
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 7.0e-101 371.3 297 60.6
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.6e-100 370.2 308 60.4
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 1.6e-100 370.2 308 60.4
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 2.6e-100 369.4 297 60.6
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 3.5e-100 369.0 283 64.0
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 7.7e-100 367.9 249 71.9
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 1.7e-99 366.7 299 59.9
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 2.2e-99 366.3 305 61.0
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 2.2e-99 366.3 299 58.5
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 2.9e-99 365.9 278 63.3
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 3.8e-99 365.5 298 60.1
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 8.5e-99 364.4 274 65.0
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 7.2e-98 361.3 300 61.7
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 9.4e-98 360.9 276 64.1
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 9.4e-98 360.9 298 59.7
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 2.1e-97 359.8 274 61.7
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 8.0e-97 357.8 277 64.3
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 1.0e-96 357.5 275 61.5
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 1.0e-96 357.5 275 61.5
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 1.4e-96 357.1 298 59.1
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 1.8e-96 356.7 298 58.7
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 4.4e-95 352.1 299 58.5
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 5.7e-95 351.7 299 58.5
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 3.7e-94 349.0 300 60.0
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 3.7e-94 349.0 350 52.0
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 4.8e-94 348.6 240 70.4
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 4.8e-94 348.6 276 61.6
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.1e-93 347.4 297 58.6
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 1.1e-93 347.4 297 59.3
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 1.8e-93 346.7 299 59.9
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 2.7e-92 342.8 300 58.7
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 4.5e-92 342.0 301 58.8
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 4.5e-92 342.0 252 65.9
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 5.9e-92 341.7 298 59.4
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.7e-91 340.1 299 59.5
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 8.5e-91 337.8 297 55.2
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 1.1e-90 337.4 300 58.7
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.9e-90 336.7 299 57.9
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 1.6e-89 333.6 306 57.2
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 3.0e-88 329.3 298 57.7
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 3.0e-88 329.3 298 57.0
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 3.0e-88 329.3 305 55.4
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 2.0e-87 326.6 303 56.4
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 5.7e-87 325.1 226 69.0
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.7e-86 323.6 275 59.3
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 4.9e-86 322.0 309 55.0
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 1.1e-85 320.9 274 56.9
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 2.4e-85 319.7 312 55.1
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 4.1e-85 318.9 275 59.3
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 9.1e-85 317.8 300 53.0
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 1.2e-84 317.4 311 55.3
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 1.5e-82 310.5 227 66.5
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 9.5e-82 307.8 228 64.0
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.6e-81 307.0 275 56.4
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 3.6e-81 305.8 286 55.2
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 2.3e-80 303.1 233 62.2
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 9.8e-79 297.7 297 52.9
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 4.9e-78 295.4 238 60.1
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 9.2e-77 291.2 240 60.4
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 9.2e-77 291.2 299 52.8
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 2.3e-75 286.6 217 63.1
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 2.1e-73 280.0 223 61.0
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 1.0e-72 277.7 237 58.6
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 1.2e-71 274.2 229 58.5
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 1.2e-71 274.2 173 74.6
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 4.4e-71 272.3 177 73.4
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 2.0e-68 263.5 229 58.5
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 7.8e-68 261.5 300 47.3
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 3.0e-67 259.6 308 47.7
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 1.2e-65 254.2 311 44.4
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 6.2e-65 251.9 183 66.1
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 1.5e-63 247.3 313 46.0
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 2.9e-62 243.0 158 69.0
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.4e-56 224.2 316 40.2
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 1.8e-56 223.8 159 64.8
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.6e-55 219.9 318 39.9
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 3.4e-55 219.5 260 47.7
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.7e-54 217.2 298 45.3
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 3.5e-52 209.5 309 42.7
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 3.1e-48 196.4 181 55.8
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 1.2e-47 194.5 222 47.7
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 1.7e-46 190.7 161 56.5
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 1.5e-42 177.6 267 40.1
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 3.6e-41 172.9 114 73.7
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 1.4e-40 171.0 142 59.2
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 2.4e-37 160.2 120 65.0
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 3.0e-35 153.3 99 70.7
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 1.1e-32 144.8 178 45.5
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 2.6e-31 140.2 112 58.9
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 1.1e-26 124.8 104 59.6
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 5.1e-19 99.4 92 54.3
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 3.1e-16 90.1 71 63.4
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 5.0e-14 82.8 79 50.6
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 1.4e-13 81.3 71 56.3
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 3.9e-11 73.2 66 48.5
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 1.9e-10 70.9 59 57.6
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.6e-09 67.8 103 40.8


User provided reference genes

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