Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A441G20 Lonicera japonica HOM05D002126 ORTHO05D002195 2.6e-40 168.3 87 100.0
Lj7A399T59 Lonicera japonica HOM05D002126 ORTHO05D002195 6.2e-18 94.0 65 80.0
Cc07_g03150 Coffea canephora HOM05D002126 ORTHO05D002195 8.7e-12 73.6 50 78.0
Dinv33736 Davidia involucrata HOM05D002126 ORTHO05D002195 1.5e-11 72.8 65 63.1
MSTRG.23954 Avicennia marina HOM05D002126 ORTHO05D002195 4.3e-11 71.2 50 76.0
Nitab4.5_0000564g0220 Nicotiana tabacum HOM05D002126 ORTHO05D002195 1.3e-10 69.7 50 68.0
Nitab4.5_0006635g0020 Nicotiana tabacum HOM05D002126 ORTHO05D002195 1.3e-10 69.7 50 68.0
MSTRG.15482 Avicennia marina HOM05D002126 ORTHO05D002195 1.6e-10 69.3 64 62.5
Eucgr.J01221 Eucalyptus grandis HOM05D002126 ORTHO05D002195 1.6e-10 69.3 50 72.0
Nitab4.5_0000002g0360 Nicotiana tabacum HOM05D002126 ORTHO05D002195 1.6e-10 69.3 64 57.8
MSTRG.3320 Avicennia marina HOM05D002126 ORTHO05D002195 2.1e-10 68.9 64 62.5
CAN.G206.127 Capsicum annuum HOM05D002126 ORTHO05D002195 2.1e-10 68.9 50 68.0
DCAR_011147 Daucus carota HOM05D002126 ORTHO05D002195 2.1e-10 68.9 65 58.5
Cfa012546 Carpinus fangiana HOM05D002126 ORTHO05D002195 2.8e-10 68.6 65 58.5
ECA246G3053 Erigeron canadensis HOM05D002126 ORTHO05D002195 3.6e-10 68.2 65 63.1
Peaxi162Scf00451g00939 Petunia axillaris HOM05D002126 ORTHO05D002195 3.6e-10 68.2 64 59.4
QL02p080915 Quercus lobata HOM05D002126 ORTHO05D002195 3.6e-10 68.2 53 69.8
Oeu021374.1 Olea europaea HOM05D002126 ORTHO05D002195 6.2e-10 67.4 50 68.0
CSS0000973 Camellia sinensis var. sinensis HOM05D002126 ORTHO05D002195 8.1e-10 67.0 50 74.0
CSS0034464 Camellia sinensis var. sinensis HOM05D002126 ORTHO05D002195 8.1e-10 67.0 50 74.0
Haze_14564 Corylus avellana HOM05D002126 ORTHO05D002195 1.1e-09 66.6 52 69.2
MBI01_g12913_MAGBIO Magnolia biondii HOM05D002126 ORTHO05D002195 1.1e-09 66.6 61 62.3
Manes.14G076000 Manihot esculenta HOM05D002126 ORTHO05D002195 1.4e-09 66.2 56 66.1
Nn4g23077 Nelumbo nucifera HOM05D002126 ORTHO05D002195 1.4e-09 66.2 61 63.9
Solyc02g087760.3 Solanum lycopersicum HOM05D002126 ORTHO05D002195 1.4e-09 66.2 50 66.0
Sopen02g032490 Solanum pennellii HOM05D002126 ORTHO05D002195 1.4e-09 66.2 50 66.0
PGSC0003DMG400001315 Solanum tuberosum HOM05D002126 ORTHO05D002195 1.4e-09 66.2 50 66.0
CDE04G1492 Ceratophyllum demersum HOM05D002126 ORTHO05D002195 1.8e-09 65.9 55 70.9
Prupe.5G188300 Prunus persica HOM05D002126 ORTHO05D002195 2.4e-09 65.5 66 59.1
CSS0001840 Camellia sinensis var. sinensis HOM05D002126 ORTHO05D002195 3.1e-09 65.1 53 67.9
CSS0010555 Camellia sinensis var. sinensis HOM05D002126 ORTHO05D002195 3.1e-09 65.1 53 67.9
vmacro18206 Vaccinium macrocarpon HOM05D002126 ORTHO05D002195 3.1e-09 65.1 48 72.9
Dinv06523 Davidia involucrata HOM05D002126 ORTHO05D002195 4.0e-09 64.7 47 72.3
Hma1.2p1_0449F.1_g155190 Hydrangea macrophylla HOM05D002126 ORTHO05D002195 4.0e-09 64.7 49 73.5
Potri.015G063600 Populus trichocarpa HOM05D002126 ORTHO05D002195 4.0e-09 64.7 51 70.6
SalBow1G8641 Salvia bowleyana HOM05D002126 ORTHO05D002195 4.0e-09 64.7 51 72.5
CANSAT80G1816 Cannabis sativa HOM05D002126 ORTHO05D002195 6.9e-09 63.9 66 59.1
Glyma.05G028600 Glycine max HOM05D002126 ORTHO05D002195 6.9e-09 63.9 51 70.6
TAR629G3444 Trochodendron aralioides HOM05D002126 ORTHO05D002195 6.9e-09 63.9 49 71.4
MSTRG.3224 Avicennia marina HOM05D002126 ORTHO05D002195 9.0e-09 63.5 49 71.4
Ciclev10031221m.g Citrus clementina HOM05D002126 ORTHO05D002195 9.0e-09 63.5 66 57.6
Haze_07361 Corylus avellana HOM05D002126 ORTHO05D002195 9.0e-09 63.5 66 59.1
Hund09362 Selenicereus undatus HOM05D002126 ORTHO05D002195 9.0e-09 63.5 51 70.6
MD06G1189500 Malus domestica HOM05D002126 ORTHO05D002195 1.2e-08 63.2 65 61.5
TAR371G1185 Trochodendron aralioides HOM05D001233 ORTHO05D002195 1.2e-08 63.2 66 57.6
Manes.05G098175 Manihot esculenta HOM05D002126 ORTHO05D002195 1.5e-08 62.8 66 54.5
Nitab4.5_0003081g0040 Nicotiana tabacum HOM05D002126 ORTHO05D002195 1.5e-08 62.8 50 64.0
Sabra15G0089100 Salix brachista HOM05D002126 ORTHO05D002195 1.5e-08 62.8 51 68.6
Sed0016857 Sechium edule HOM05D002126 ORTHO05D002195 1.5e-08 62.8 60 61.7
Atru.chr11.1843 Acer truncatum HOM05D002126 ORTHO05D002195 2.0e-08 62.4 61 60.7
Nn3g17154 Nelumbo nucifera HOM05D002126 ORTHO05D002195 2.0e-08 62.4 61 59.0
Cpa.g.sc183.22 Carica papaya HOM05D002126 ORTHO05D002195 2.6e-08 62.0 65 58.5
HanXRQChr02g0056381 Helianthus annuus HOM05D002126 ORTHO05D002195 2.6e-08 62.0 80 53.8
Manes.06G095300 Manihot esculenta HOM05D002126 ORTHO05D002195 2.6e-08 62.0 55 63.6
Phvul.003G191700 Phaseolus vulgaris HOM05D002126 ORTHO05D002195 2.6e-08 62.0 51 70.6
VMungo1215G3161 Vigna mungo HOM05D002126 ORTHO05D002195 2.6e-08 62.0 51 70.6
arahy.Tifrunner.gnm1.ann1.LFLY9L Arachis hypogaea HOM05D002126 ORTHO05D002195 3.4e-08 61.6 65 58.5
arahy.Tifrunner.gnm1.ann1.NNI2YS Arachis hypogaea HOM05D002126 ORTHO05D002195 3.4e-08 61.6 65 58.5
MD14G1196500 Malus domestica HOM05D002126 ORTHO05D002195 3.4e-08 61.6 66 59.1
QL02p073389 Quercus lobata HOM05D002126 ORTHO05D002195 3.4e-08 61.6 64 57.8
Actinidia37645 Actinidia chinensis HOM05D002126 ORTHO05D002195 4.4e-08 61.2 52 73.1
Eucgr.G02532 Eucalyptus grandis HOM05D002126 ORTHO05D002195 4.4e-08 61.2 60 58.3
Lalb_Chr07g0177911 Lupinus albus HOM05D002126 ORTHO05D002195 4.4e-08 61.2 51 72.5
PSO017G6387 Papaver somniferum HOM05D002126 ORTHO05D002195 4.4e-08 61.2 65 58.5
Peaxi162Scf00129g00418 Petunia axillaris HOM05D002126 ORTHO05D002195 4.4e-08 61.2 64 54.7
Potri.012G069900 Populus trichocarpa HOM05D002126 ORTHO05D002195 4.4e-08 61.2 51 70.6
QL10p015981 Quercus lobata HOM05D002126 ORTHO05D002195 5.8e-08 60.8 51 68.6
Lj4g0008436 Lotus japonicus HOM05D002126 ORTHO05D002195 7.6e-08 60.5 51 68.6
Lalb_Chr12g0196781 Lupinus albus HOM05D002126 ORTHO05D002195 7.6e-08 60.5 66 59.1
RcHm_v2.0_Chr7g0180771 Rosa chinensis HOM05D002126 ORTHO05D002195 7.6e-08 60.5 64 59.4
Oeu060926.1 Olea europaea HOM05D002126 ORTHO05D002195 9.9e-08 60.1 50 70.0
PSO478G3322 Papaver somniferum HOM05D002126 ORTHO05D002195 9.9e-08 60.1 65 56.9
Migut.H00900 Erythranthe guttata HOM05D002126 ORTHO05D002195 1.3e-07 59.7 53 67.9
Lsat_1_v5_gn_3_100200 Lactuca sativa HOM05D002126 ORTHO05D002195 1.3e-07 59.7 50 74.0
Psat4g052360 Pisum sativum HOM05D002126 ORTHO05D002195 1.3e-07 59.7 51 66.7
Glyma.17G098200 Glycine max HOM05D002126 ORTHO05D002195 1.7e-07 59.3 51 68.6
Ca_21839_v3 Cicer arietinum L. HOM05D002126 ORTHO05D002195 2.2e-07 58.9 51 66.7
Dinv19930 Davidia involucrata HOM05D002126 ORTHO05D002195 2.2e-07 58.9 53 64.2
Ciclev10019494m.g Citrus clementina HOM05D002126 ORTHO05D002195 2.9e-07 58.5 51 66.7
Lsat_1_v5_gn_4_177040 Lactuca sativa HOM05D002126 ORTHO05D002195 2.9e-07 58.5 60 58.3
Sed0017652 Sechium edule HOM05D000610 ORTHO05D001284 2.9e-07 58.5 64 56.2
ClCG01G014460 Citrullus lanatus HOM05D000610 ORTHO05D001284 3.8e-07 58.2 65 55.4
MELO3C002201.2 Cucumis melo HOM05D002126 ORTHO05D002195 3.8e-07 58.2 54 61.1
CsaV3_1G007860 Cucumis sativus L. HOM05D002126 ORTHO05D002195 3.8e-07 58.2 64 54.7
Sc04g0002510 Simmondsia chinensis HOM05D002126 ORTHO05D002195 3.8e-07 58.2 51 64.7
CiPaw.11G039800 Carya illinoinensis HOM05D002126 ORTHO05D002195 4.9e-07 57.8 51 66.7
Medtr4g108140 Medicago truncatula HOM05D002126 ORTHO05D002195 4.9e-07 57.8 51 66.7
Os05g0535900 Oryza sativa ssp. japonica HOM05D002126 ORTHO05D002195 4.9e-07 57.8 66 57.6
PGR119G0400 Punica granatum HOM05D002126 ORTHO05D002195 4.9e-07 57.8 66 53.0
Rhsim08G0066800 Rhododendron simsii HOM05D002126 ORTHO05D002195 4.9e-07 57.8 52 69.2
GSVIVG01020054001 Vitis vinifera HOM05D002126 ORTHO05D002195 4.9e-07 57.8 62 61.3
Zm00001eb356480 Zea mays HOM05D002126 ORTHO05D002195 4.9e-07 57.8 51 64.7
CiPaw.04G018800 Carya illinoinensis HOM05D002126 ORTHO05D002195 6.4e-07 57.4 60 55.0
FvH4_5g15290 Fragaria vesca HOM05D002126 ORTHO05D002195 6.4e-07 57.4 64 57.8
FAN04G0109 Fragaria x ananassa HOM05D002126 ORTHO05D002195 6.4e-07 57.4 64 57.8
FAN13G2329 Fragaria x ananassa HOM05D002126 ORTHO05D002195 6.4e-07 57.4 64 57.8
FAN18G2662 Fragaria x ananassa HOM05D002126 ORTHO05D002195 6.4e-07 57.4 64 57.8
HPP92_009115 Vanilla planifolia HOM05D002126 ORTHO05D002195 6.4e-07 57.4 65 60.0
AT2G02790 Arabidopsis thaliana HOM05D002126 ORTHO05D002195 8.4e-07 57.0 65 53.8
ECA238G3074 Erigeron canadensis HOM05D002126 ORTHO05D002195 8.4e-07 57.0 80 50.0
TWI81G0736 Tripterygium wilfordii HOM05D002126 ORTHO05D002195 8.4e-07 57.0 60 56.7
Cpa.g.c33966 Carica papaya HOM05D002126 ORTHO05D002195 1.1e-06 56.6 66 56.1
Cpa.g.sc17.225 Carica papaya HOM05D002126 ORTHO05D002195 1.1e-06 56.6 66 56.1
Thhalv10003878m.g Eutrema salsugineum HOM05D002126 ORTHO05D002195 1.1e-06 56.6 65 53.8
Lalb_Chr07g0177931 Lupinus albus HOM05D002126 ORTHO05D002195 1.1e-06 56.6 55 65.5
vmacro05728 Vaccinium macrocarpon HOM05D002126 ORTHO05D002195 1.1e-06 56.6 65 50.8
Aqoxy3G00717 Aquilegia oxysepala HOM05D002126 ORTHO05D002195 1.4e-06 56.2 61 57.4
FAN08G1031 Fragaria x ananassa HOM05D002126 ORTHO05D002195 1.4e-06 56.2 64 57.8
Sabra12G0049800 Salix brachista HOM05D002126 ORTHO05D002195 1.4e-06 56.2 51 66.7
Sopen05g003090 Solanum pennellii HOM05D002126 ORTHO05D002195 1.4e-06 56.2 70 51.4
PGSC0003DMG400017629 Solanum tuberosum HOM05D002126 ORTHO05D002195 1.4e-06 56.2 70 51.4
SGA_v2.0_scaffold205G41767 Striga asiatica HOM05D002126 ORTHO05D002195 1.4e-06 56.2 54 59.3
TPR.G27378 Trifolium pratense HOM05D002126 ORTHO05D002195 1.4e-06 56.2 51 64.7
CAN.G279.20 Capsicum annuum HOM05D002126 ORTHO05D002195 1.9e-06 55.8 70 52.9
Eucgr.B00458 Eucalyptus grandis HOM05D002126 ORTHO05D002195 1.9e-06 55.8 51 60.8
Glyma.04G173100 Glycine max HOM05D002126 ORTHO05D002195 1.9e-06 55.8 54 61.1
AL5G12000 Arabidopsis lyrata HOM05D002126 ORTHO05D002195 2.4e-06 55.5 65 53.8
BcaB07g30691 Brassica carinata HOM05D002126 ORTHO05D002195 2.4e-06 55.5 72 48.6
AUR62008372 Chenopodium quinoa HOM05D002126 ORTHO05D002195 2.4e-06 55.5 51 60.8
TAR374G1480 Trochodendron aralioides HOM05D002126 ORTHO05D002195 2.4e-06 55.5 61 59.0
Zm00001eb294110 Zea mays HOM05D002126 ORTHO05D002195 2.4e-06 55.5 51 62.7
Aa31LG2G7480 Aethionema arabicum HOM05D002126 ORTHO05D002195 3.2e-06 55.1 65 50.8
Hma1.2p1_1617F.1_g293820 Hydrangea macrophylla HOM05D002126 ORTHO05D002195 3.2e-06 55.1 51 64.7
Sp2g13890 Schrenkiella parvula HOM05D002126 ORTHO05D002195 3.2e-06 55.1 65 52.3
EL10Ac5g10957 Beta vulgaris HOM05D002126 ORTHO05D002195 4.2e-06 54.7 51 58.8
AUR62021725 Chenopodium quinoa HOM05D002126 ORTHO05D002195 4.2e-06 54.7 51 58.8
THA.LOC104801788 Tarenaya hassleriana HOM05D002126 ORTHO05D002195 4.2e-06 54.7 55 58.2
ATR1120G171 Amborella trichopoda HOM05D002126 ORTHO05D002195 5.4e-06 54.3 62 58.1
Phvul.009G189500 Phaseolus vulgaris HOM05D002126 ORTHO05D002195 5.4e-06 54.3 68 51.5
PGR083G2227 Punica granatum HOM05D002126 ORTHO05D002195 5.4e-06 54.3 50 64.0
SGA_v2.0_scaffold135G34769 Striga asiatica HOM05D002126 ORTHO05D002195 5.4e-06 54.3 48 64.6
unitig_748.g8618 Utricularia gibba HOM05D002126 ORTHO05D002195 5.4e-06 54.3 51 62.7
HanXRQChr14g0449911 Helianthus annuus HOM05D002126 ORTHO05D002195 7.1e-06 53.9 50 66.0
TAR622G0039 Trochodendron aralioides HOM05D002126 ORTHO05D002195 7.1e-06 53.9 55 63.6
unitig_32.g10745 Utricularia gibba HOM05D002126 ORTHO05D002195 7.1e-06 53.9 49 65.3
Ah.11g048690 Amaranthus hybridus HOM05D002126 ORTHO05D002195 9.3e-06 53.5 51 68.6
CARHR145230 Cardamine hirsuta HOM05D002126 ORTHO05D002195 9.3e-06 53.5 65 50.8
COL.COLO4_14046 Corchorus olitorius HOM05D002126 ORTHO05D002195 9.3e-06 53.5 64 54.7
Duzib268G0700 Durio zibethinus HOM05D002126 ORTHO05D002195 9.3e-06 53.5 55 60.0
Lj1g0025876 Lotus japonicus HOM05D002126 ORTHO05D002195 9.3e-06 53.5 53 62.3
SEGI_07284 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 9.3e-06 53.5 60 56.7


User provided reference genes

Program Settings