Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 2.5e-141 505.4 247 100.0
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 6.1e-119 431.0 247 86.6
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 1.1e-112 410.2 239 84.5
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 1.6e-111 406.4 247 81.8
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 4.7e-111 404.8 247 80.2
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 7.9e-111 404.1 248 79.8
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 1.8e-110 402.9 243 79.8
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 3.0e-110 402.1 243 81.5
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 3.9e-110 401.7 235 82.1
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 8.8e-110 400.6 243 79.0
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 1.5e-109 399.8 247 79.4
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 4.4e-109 398.3 247 78.1
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 2.2e-108 396.0 231 81.4
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 4.8e-108 394.8 243 79.8
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 6.3e-108 394.4 243 78.2
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 1.8e-107 392.9 255 76.9
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 5.3e-107 391.3 243 77.0
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 7.0e-107 391.0 234 79.5
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.2e-106 390.2 243 77.8
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 2.6e-106 389.0 243 78.6
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 2.6e-106 389.0 248 76.6
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 2.6e-106 389.0 243 77.0
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 2.6e-106 389.0 219 82.6
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 3.5e-106 388.7 243 77.4
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.3e-105 386.7 231 80.1
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.3e-105 386.7 243 77.0
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.3e-105 386.7 247 76.5
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.3e-105 386.7 247 76.5
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.7e-105 386.3 235 80.4
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 2.2e-105 386.0 234 76.9
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 2.9e-105 385.6 240 76.2
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 5.0e-105 384.8 247 74.5
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 5.0e-105 384.8 231 78.8
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 5.0e-105 384.8 231 78.8
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 5.0e-105 384.8 245 80.0
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 5.0e-105 384.8 235 79.6
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 5.0e-105 384.8 238 78.6
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 8.5e-105 384.0 237 78.1
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 1.5e-104 383.3 235 77.4
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 1.9e-104 382.9 244 76.2
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 2.5e-104 382.5 243 77.4
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.5e-104 382.5 243 76.5
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 2.5e-104 382.5 231 78.4
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 3.2e-104 382.1 231 77.9
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 4.2e-104 381.7 234 75.6
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 4.2e-104 381.7 240 75.4
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 5.5e-104 381.3 232 81.0
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 5.5e-104 381.3 216 83.3
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 7.2e-104 380.9 215 83.7
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 1.2e-103 380.2 231 78.4
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 2.1e-103 379.4 245 75.5
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 4.7e-103 378.3 247 75.3
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 4.7e-103 378.3 245 74.3
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 6.1e-103 377.9 243 74.5
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 8.0e-103 377.5 236 74.2
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 1.8e-102 376.3 245 75.1
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 2.3e-102 375.9 243 76.1
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 3.9e-102 375.2 231 77.1
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 5.2e-102 374.8 240 75.4
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 1.5e-101 373.2 236 76.3
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 1.5e-101 373.2 243 74.1
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 3.3e-101 372.1 242 73.1
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 4.4e-101 371.7 236 76.3
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 4.4e-101 371.7 248 75.0
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.3e-100 370.2 244 74.2
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 1.3e-100 370.2 246 75.2
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 3.7e-100 368.6 248 73.4
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 3.7e-100 368.6 244 73.8
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 3.7e-100 368.6 248 75.0
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 8.2e-100 367.5 235 77.0
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 1.4e-99 366.7 248 74.2
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 1.4e-99 366.7 242 74.4
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 7.0e-99 364.4 242 74.4
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 2.0e-98 362.8 239 73.2
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 2.0e-98 362.8 244 74.2
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 2.9e-97 359.0 244 71.7
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 8.5e-97 357.5 245 71.8
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 2.5e-96 355.9 245 70.6
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.7e-95 352.4 237 70.9
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.4e-94 350.1 220 77.7
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 4.0e-94 348.6 190 86.8
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 6.8e-94 347.8 234 70.1
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 2.8e-92 342.4 247 65.6
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 1.8e-91 339.7 230 70.0
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 2.0e-90 336.3 246 67.5
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 3.5e-90 335.5 247 65.6
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 2.3e-86 322.8 243 69.1
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 7.5e-85 317.8 189 81.5
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 6.3e-84 314.7 262 61.5
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 1.1e-83 313.9 247 58.7
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 4.1e-83 312.0 261 60.9
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 3.5e-82 308.9 241 61.4
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 1.3e-81 307.0 237 59.9
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.3e-81 307.0 237 60.3
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 8.6e-81 304.3 208 70.7
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.6e-79 300.1 237 60.8
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 6.1e-79 298.1 271 59.4
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 8.0e-71 271.2 228 58.3
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 2.3e-70 269.6 218 58.7
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 4.0e-70 268.9 218 59.2
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 4.0e-70 268.9 218 59.2
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 4.0e-70 268.9 227 56.8
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 1.2e-69 267.3 218 59.2
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 1.2e-69 267.3 218 59.2
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 1.2e-69 267.3 218 59.2
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 1.5e-69 266.9 223 57.8
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 7.5e-69 264.6 154 77.9
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 9.8e-69 264.2 221 57.9
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 4.9e-68 261.9 233 54.9
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 8.3e-68 261.2 228 57.5
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.4e-67 260.4 161 76.4
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 1.4e-67 260.4 217 57.1
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 1.9e-67 260.0 189 65.6
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 3.2e-67 259.2 219 56.6
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 4.1e-67 258.8 228 55.7
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 1.2e-66 257.3 224 55.4
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 2.3e-65 253.1 213 56.3
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 7.3e-64 248.1 234 53.4
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 4.7e-63 245.4 225 54.2
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 1.7e-57 226.9 168 64.9
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 6.6e-57 224.9 245 49.8
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 2.3e-54 216.5 224 50.4
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 8.9e-54 214.5 209 58.4
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 2.5e-48 196.4 206 49.0
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 2.1e-42 176.8 119 69.7
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 2.3e-33 146.7 221 37.1
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.5e-32 143.3 97 76.3
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 3.9e-25 119.4 210 33.3
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 2.1e-23 113.6 93 54.8
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 3.4e-21 106.3 158 36.1
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 2.2e-20 103.6 179 34.6
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 1.4e-19 100.9 80 65.0
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 3.9e-17 92.8 58 72.4
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 2.8e-15 86.7 48 87.5
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 4.5e-13 79.3 43 79.1
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 2.5e-11 73.6 48 70.8
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 3.3e-08 63.2 239 25.1
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 2.2e-07 60.5 40 60.0


User provided reference genes

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