Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 5.5e-98 360.9 176 100.0
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 2.4e-93 345.5 173 96.0
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 4.1e-93 344.7 173 95.4
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 4.1e-93 344.7 173 95.4
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 2.0e-92 342.4 173 95.4
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 2.6e-92 342.0 174 94.3
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.4e-92 341.7 173 94.2
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 7.7e-92 340.5 173 93.6
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 7.7e-92 340.5 176 92.6
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 1.0e-91 340.1 176 92.6
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 1.0e-91 340.1 173 93.6
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.7e-91 339.3 173 93.6
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 1.7e-91 339.3 173 94.2
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 1.7e-91 339.3 173 94.2
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 1.7e-91 339.3 173 93.1
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 1.7e-91 339.3 171 94.2
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 1.7e-91 339.3 173 94.2
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 3.8e-91 338.2 171 94.7
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 5.0e-91 337.8 173 93.1
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 6.5e-91 337.4 173 93.1
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 6.5e-91 337.4 173 93.1
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 8.5e-91 337.0 173 91.9
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 1.1e-90 336.7 173 93.6
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 1.1e-90 336.7 173 93.6
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 1.4e-90 336.3 173 91.9
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 4.2e-90 334.7 173 91.9
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 5.5e-90 334.3 173 92.5
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 7.2e-90 334.0 173 91.9
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 9.4e-90 333.6 171 93.0
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 1.2e-89 333.2 173 92.5
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.6e-89 332.8 171 92.4
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 3.6e-89 331.6 174 92.5
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.6e-89 331.6 174 92.5
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 3.6e-89 331.6 173 90.8
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 4.7e-89 331.3 173 90.8
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 6.1e-89 330.9 171 92.4
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 7.9e-89 330.5 173 90.8
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 1.4e-88 329.7 173 90.8
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.3e-88 328.9 174 92.0
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 3.0e-88 328.6 173 90.8
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 3.9e-88 328.2 173 90.8
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 3.9e-88 328.2 174 90.2
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 5.2e-88 327.8 173 89.0
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 6.7e-88 327.4 173 90.2
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.5e-87 326.2 173 88.4
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 2.0e-87 325.9 172 89.0
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 2.0e-87 325.9 171 91.8
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 3.3e-87 325.1 173 88.4
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 3.3e-87 325.1 173 88.4
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 4.4e-87 324.7 173 89.0
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 4.4e-87 324.7 172 89.0
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 4.4e-87 324.7 172 89.5
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 5.7e-87 324.3 171 90.1
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 7.4e-87 323.9 171 88.3
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 9.7e-87 323.6 172 88.4
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 9.7e-87 323.6 172 88.4
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 9.7e-87 323.6 171 90.1
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 1.3e-86 323.2 174 89.7
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 1.3e-86 323.2 171 88.9
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 1.3e-86 323.2 172 88.4
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 2.2e-86 322.4 173 87.3
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 2.8e-86 322.0 171 90.6
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 2.8e-86 322.0 173 86.7
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 4.8e-86 321.2 171 88.3
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 6.3e-86 320.9 171 88.3
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 8.2e-86 320.5 172 87.2
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 8.2e-86 320.5 171 88.3
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 1.1e-85 320.1 173 89.0
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.4e-85 319.7 172 87.2
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 1.8e-85 319.3 173 87.9
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 1.8e-85 319.3 174 88.5
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 2.4e-85 318.9 171 88.3
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 3.1e-85 318.5 225 72.4
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 4.1e-85 318.2 172 86.6
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 4.1e-85 318.2 172 86.6
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 4.1e-85 318.2 172 86.6
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 4.1e-85 318.2 172 86.6
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 5.3e-85 317.8 173 88.4
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 5.3e-85 317.8 171 87.1
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 5.3e-85 317.8 171 87.1
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 9.1e-85 317.0 172 86.0
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 3.5e-84 315.1 173 89.0
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 4.5e-84 314.7 189 81.0
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 7.7e-84 313.9 171 86.5
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 2.9e-83 312.0 173 86.1
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 5.0e-83 311.2 172 84.3
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 5.0e-83 311.2 172 84.3
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 5.0e-83 311.2 172 84.3
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 5.0e-83 311.2 172 84.3
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 6.5e-83 310.8 172 86.0
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 1.5e-82 309.7 180 83.9
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 1.9e-82 309.3 172 83.7
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 7.2e-82 307.4 172 83.7
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 1.2e-81 306.6 158 92.4
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.2e-81 306.6 170 84.7
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.7e-81 305.4 170 84.1
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 4.0e-80 301.6 172 83.7
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 6.7e-80 300.8 157 93.6
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 1.3e-78 296.6 165 84.2
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.8e-72 276.2 150 88.0
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 4.4e-71 271.6 148 89.9
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 1.4e-69 266.5 146 87.7
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 1.8e-69 266.2 173 69.9
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 1.0e-67 260.4 137 92.0
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 2.3e-67 259.2 175 69.7
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 8.6e-67 257.3 173 66.5
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 3.2e-66 255.4 173 66.5
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 1.0e-64 250.4 147 83.7
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 2.3e-64 249.2 130 92.3
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 1.5e-63 246.5 182 69.8
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 5.7e-63 244.6 126 92.1
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.7e-62 243.0 133 89.5
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 2.8e-62 242.3 171 72.5
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 1.8e-61 239.6 126 89.7
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 4.1e-61 238.4 133 85.7
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 7.0e-61 237.7 129 89.1
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.6e-60 236.5 126 88.9
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.6e-60 236.5 126 88.9
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 7.8e-60 234.2 175 64.6
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.0e-59 233.8 127 87.4
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 7.3e-58 227.6 129 85.3
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 2.1e-57 226.1 126 83.3
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.2e-55 220.3 162 71.6
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 9.2e-53 210.7 147 75.5
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 4.7e-49 198.4 132 72.0
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 6.2e-49 198.0 128 76.6
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 2.9e-46 189.1 126 71.4
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 2.4e-45 186.0 130 75.4
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.0e-40 168.7 92 90.2
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 5.8e-39 164.9 93 87.1
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.9e-38 162.5 91 89.0
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.9e-37 159.8 94 85.1
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.7e-36 156.0 95 84.2
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.7e-36 156.0 97 80.4
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.5e-36 155.6 101 82.2
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.6e-36 155.2 104 76.0
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 6.0e-36 154.8 79 91.1
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 6.6e-35 151.4 88 83.0
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 3.3e-34 149.1 93 75.3
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 3.8e-30 135.6 73 90.4
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.6e-28 130.2 79 81.0
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 6.0e-28 128.3 98 65.3
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.9e-27 125.6 77 83.1
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 4.3e-26 122.1 109 55.0
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 2.1e-25 119.8 190 34.7
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 7.6e-23 111.3 90 64.4
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 2.7e-20 102.8 56 87.5
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 2.1e-12 76.6 36 86.1


User provided reference genes

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