Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.5e-209 732.6 376 100.0
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 5.9e-73 278.9 389 47.0
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 2.2e-67 260.4 393 45.0
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 3.5e-57 226.5 421 38.2
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 5.9e-57 225.7 400 39.5
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 6.5e-56 222.2 406 39.2
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 2.5e-55 220.3 393 41.2
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 7.2e-55 218.8 387 40.3
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 7.2e-55 218.8 218 56.9
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 9.4e-55 218.4 390 39.7
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.2e-54 218.0 405 40.5
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 1.0e-53 214.9 393 39.4
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 2.3e-53 213.8 383 41.0
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 3.0e-53 213.4 430 36.7
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 4.0e-53 213.0 392 39.5
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 5.2e-53 212.6 392 39.5
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.1e-52 211.5 405 39.5
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 2.6e-52 210.3 387 41.1
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 4.4e-52 209.5 383 41.3
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 9.7e-52 208.4 392 39.0
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.3e-51 208.0 400 38.2
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.2e-51 207.2 210 56.2
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.2e-51 207.2 400 39.5
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.8e-51 206.8 405 38.5
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.7e-51 206.5 380 39.5
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 3.7e-51 206.5 383 38.6
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.4e-50 204.5 386 39.9
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.8e-50 204.1 396 39.1
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 2.4e-50 203.8 400 39.8
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.6e-49 201.1 390 40.5
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 2.0e-49 200.7 395 36.5
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.3e-48 198.0 390 39.5
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 6.5e-48 195.7 380 38.2
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 8.5e-48 195.3 393 37.7
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 8.5e-48 195.3 418 36.6
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.1e-47 194.9 388 37.1
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 3.2e-47 193.4 439 36.9
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.2e-47 193.4 389 38.6
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 9.4e-47 191.8 402 36.3
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.2e-46 191.4 319 41.7
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.1e-46 190.7 239 48.1
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 3.6e-46 189.9 319 41.4
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 8.0e-46 188.7 266 47.0
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.0e-45 188.3 127 73.2
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 5.2e-45 186.0 392 35.5
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 5.2e-45 186.0 380 37.4
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 6.8e-45 185.7 342 38.6
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.6e-44 183.7 397 36.5
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.4e-44 183.3 385 36.6
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 7.5e-44 182.2 205 51.2
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 9.8e-44 181.8 388 35.3
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.8e-43 180.3 179 58.1
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 3.7e-43 179.9 390 35.9
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 6.3e-43 179.1 384 36.7
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.1e-42 178.3 409 35.2
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.4e-42 177.9 333 39.9
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 1.4e-42 177.9 382 36.6
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 1.8e-42 177.6 194 53.1
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.8e-42 177.6 407 35.4
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 3.1e-42 176.8 398 35.9
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 4.1e-42 176.4 383 37.1
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.4e-42 176.0 382 35.1
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.2e-41 174.9 146 65.1
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.0e-41 174.1 389 35.0
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.5e-41 173.3 390 34.6
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.2e-40 170.6 384 37.0
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 2.9e-40 170.2 200 49.5
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 2.9e-40 170.2 116 69.8
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.9e-40 170.2 388 37.4
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 3.8e-40 169.9 207 47.8
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 3.8e-40 169.9 438 34.0
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 5.0e-40 169.5 396 35.4
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 6.5e-40 169.1 389 35.2
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 3.2e-39 166.8 203 51.2
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 4.2e-39 166.4 147 60.5
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 5.5e-39 166.0 190 49.5
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 9.4e-39 165.2 409 35.9
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.1e-38 164.1 390 33.1
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 2.1e-38 164.1 178 50.0
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 2.7e-38 163.7 239 43.5
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 2.7e-38 163.7 239 43.5
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.7e-38 163.7 336 37.8
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 4.7e-38 162.9 174 52.9
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 4.0e-37 159.8 199 49.7
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.5e-36 157.9 277 38.6
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 2.0e-36 157.5 375 34.7
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 7.5e-36 155.6 137 60.6
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 9.8e-36 155.2 155 52.9
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.3e-35 154.8 175 48.0
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.7e-35 153.3 397 31.0
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.1e-34 151.8 399 34.1
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.8e-34 151.0 204 46.1
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.8e-34 151.0 204 46.1
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.1e-34 149.8 312 36.5
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 5.4e-34 149.4 185 47.6
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 7.0e-34 149.1 185 48.6
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 7.0e-34 149.1 259 41.3
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 9.2e-34 148.7 157 52.2
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 1.6e-33 147.9 351 36.8
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.6e-33 147.9 394 32.7
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 4.5e-33 146.4 238 41.2
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 1.0e-32 145.2 154 51.3
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.5e-31 141.4 379 32.2
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.5e-31 141.4 261 36.4
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 1.9e-31 141.0 155 50.3
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.5e-31 140.6 309 35.0
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 5.6e-31 139.4 292 32.2
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 5.6e-31 139.4 340 34.7
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 5.6e-31 139.4 340 34.7
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 1.6e-30 137.9 197 41.6
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 3.6e-30 136.7 258 38.4
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 4.7e-30 136.3 182 44.0
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 4.7e-30 136.3 218 44.5
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 4.7e-30 136.3 276 33.3
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 8.0e-30 135.6 390 30.3
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.0e-29 135.2 146 50.7
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.0e-29 135.2 146 50.7
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.4e-29 134.8 225 40.0
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.4e-29 134.8 225 40.0
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.4e-29 134.8 244 37.3
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.4e-29 134.8 309 32.7
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 3.0e-29 133.7 262 37.8
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 3.0e-29 133.7 247 36.4
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 5.2e-29 132.9 107 64.5
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.2e-28 131.7 144 53.5
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-28 131.7 144 53.5
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.2e-28 131.7 144 53.5
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.2e-28 131.7 383 30.8
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.0e-28 131.0 104 62.5
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 2.0e-28 131.0 104 62.5
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.0e-28 131.0 377 30.8
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 3.4e-28 130.2 182 42.3
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 9.8e-28 128.6 177 45.2
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 9.8e-28 128.6 383 30.5
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.3e-27 128.3 253 32.8
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.3e-27 128.3 444 26.1
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 2.2e-27 127.5 135 54.8
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 2.9e-27 127.1 296 34.5
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 2.9e-27 127.1 119 53.8
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.1e-26 125.2 160 46.9
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.1e-26 125.2 160 46.9
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.1e-26 125.2 160 46.9
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 5.4e-26 122.9 273 34.8
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.6e-25 121.3 73 80.8
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 2.0e-25 120.9 112 56.2
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.3e-24 118.2 273 35.5
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 1.7e-24 117.9 386 32.1
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 2.3e-24 117.5 511 26.4
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 3.9e-24 116.7 146 45.9
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 6.6e-24 115.9 159 45.9
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 8.6e-24 115.5 157 45.2
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.5e-23 114.8 415 28.7
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 3.3e-23 113.6 133 49.6
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 9.5e-23 112.1 222 33.3
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.2e-22 111.7 300 34.3
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.6e-22 111.3 348 31.3
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 2.1e-22 110.9 265 34.7
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 3.6e-22 110.2 113 54.0
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 3.6e-22 110.2 73 71.2
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 3.1e-21 107.1 111 45.0
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.6e-20 104.0 359 28.7
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 1.7e-19 101.3 112 46.4
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 7.8e-17 92.4 253 32.4
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 2.1e-14 84.3 144 42.4
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 2.8e-14 84.0 266 28.9
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.8e-13 81.3 156 37.2
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 1.2e-12 78.6 129 35.7
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 5.8e-12 76.3 43 81.4
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 6.6e-08 62.8 91 35.2
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 4.3e-07 60.1 96 35.4
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 1.2e-06 58.5 176 26.1
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.2e-06 58.5 71 36.6


User provided reference genes

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