Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A407T50 Lonicera japonica HOM05D008898 ORTHO05D001155 1.5e-160 569.3 268 100.0
Dinv35017 Davidia involucrata HOM05D008898 ORTHO05D001155 2.9e-106 389.0 343 54.2
HanXRQChr17g0547181 Helianthus annuus HOM05D008898 ORTHO05D001155 2.4e-100 369.4 341 52.5
Lsat_1_v5_gn_0_16480 Lactuca sativa HOM05D008898 ORTHO05D001155 2.4e-97 359.4 342 51.2
ECA246G1437 Erigeron canadensis HOM05D008898 ORTHO05D001155 2.3e-87 326.2 304 50.7
CSS0020895 Camellia sinensis var. sinensis HOM05D008898 ORTHO05D001155 1.5e-83 313.5 345 47.0
HanXRQChr15g0474331 Helianthus annuus HOM05D008898 ORTHO05D001155 1.4e-81 307.0 343 45.2
CSS0028413 Camellia sinensis var. sinensis HOM05D008898 ORTHO05D001155 3.2e-81 305.8 335 47.2
HanXRQChr15g0474381 Helianthus annuus HOM05D008898 ORTHO05D001155 3.5e-80 302.4 343 44.9
HanXRQChr15g0474391 Helianthus annuus HOM05D008898 ORTHO05D001155 1.5e-78 297.0 328 45.7
HanXRQChr01g0029461 Helianthus annuus HOM05D008898 ORTHO05D001155 6.9e-76 288.1 334 45.2
HanXRQChr15g0474341 Helianthus annuus HOM05D008898 ORTHO05D001155 1.7e-74 283.5 328 45.4
Lsat_1_v5_gn_4_180620 Lactuca sativa HOM05D008898 ORTHO05D001155 1.2e-67 260.8 346 41.0
CSS0035119 Camellia sinensis var. sinensis HOM05D008898 ORTHO05D001155 2.0e-59 233.4 309 42.1
Lsat_1_v5_gn_5_38981 Lactuca sativa HOM05D008898 ORTHO05D001155 5.0e-50 202.2 302 37.7
Lsat_1_v5_gn_5_38300 Lactuca sativa HOM05D008898 ORTHO05D001155 6.1e-48 195.3 304 39.1
Lsat_1_v5_gn_5_38761 Lactuca sativa HOM05D008898 ORTHO05D001155 1.6e-40 170.6 293 36.2
Lsat_1_v5_gn_5_38200 Lactuca sativa HOM05D008898 ORTHO05D001155 2.3e-39 166.8 173 48.0
Dinv34857 Davidia involucrata HOM05D001729 ORTHO05D001155 3.6e-32 142.9 302 31.8
TAR625G1137 Trochodendron aralioides HOM05D001729 ORTHO05D001155 8.0e-24 115.2 313 28.4
COL.COLO4_34020 Corchorus olitorius HOM05D001729 ORTHO05D001155 1.8e-23 114.0 301 29.6
PGSC0003DMG400002644 Solanum tuberosum HOM05D008898 ORTHO05D001155 1.2e-22 111.3 180 37.8
Hund15878 Selenicereus undatus HOM05D001729 ORTHO05D001155 4.4e-22 109.4 170 36.5
DCAR_004585 Daucus carota HOM05D001729 ORTHO05D001155 3.7e-21 106.3 315 27.3
Duzib170G0599 Durio zibethinus HOM05D001729 ORTHO05D001155 5.4e-20 102.4 298 26.2
Sabra09G0127200 Salix brachista HOM05D001729 ORTHO05D001155 7.0e-20 102.1 321 29.0
PGR142G1547 Punica granatum HOM05D002743 ORTHO05D002895 7.7e-19 98.6 295 27.1
Gorai.006G112800 Gossypium raimondii HOM05D001729 ORTHO05D001155 1.1e-17 94.7 307 25.4
Gohir.A09G096401 Gossypium hirsutum HOM05D001729 ORTHO05D001155 2.5e-17 93.6 307 25.4
Gohir.D09G096101 Gossypium hirsutum HOM05D001729 ORTHO05D001155 3.3e-17 93.2 307 25.1
Nitab4.5_0002383g0130 Nicotiana tabacum HOM05D008898 ORTHO05D001155 3.3e-17 93.2 220 30.9
CAN.G1110.53 Capsicum annuum HOM05D001729 ORTHO05D001155 1.2e-16 91.3 181 30.4
Sabra15G0014700 Salix brachista HOM05D001729 ORTHO05D001155 1.2e-16 91.3 297 26.3
Lsat_1_v5_gn_5_38580 Lactuca sativa HOM05D008898 ORTHO05D001155 3.6e-16 89.7 191 33.0
Lsat_1_v5_gn_5_38600 Lactuca sativa HOM05D001729 ORTHO05D001155 3.6e-16 89.7 97 45.4
SGA_v2.0_scaffold232G43501 Striga asiatica HOM05D001729 ORTHO05D001155 3.6e-16 89.7 176 33.5
Lsat_1_v5_gn_6_92061 Lactuca sativa HOM05D001729 ORTHO05D001155 1.2e-14 84.7 329 25.2
Lj2C966T5 Lonicera japonica HOM05D008898 ORTHO05D001155 1.7e-13 80.9 176 29.5
QL02p078505 Quercus lobata HOM05D008898 ORTHO05D001155 6.3e-13 79.0 138 32.6
Lj2C966T3 Lonicera japonica HOM05D001729 ORTHO05D001155 2.0e-11 73.9 289 26.0
DCAR_013984 Daucus carota HOM05D008898 ORTHO05D016080 2.7e-11 73.6 55 60.0
AUR62020517 Chenopodium quinoa HOM05D002743 ORTHO05D002895 1.3e-10 71.2 177 31.6
AUR62035624 Chenopodium quinoa HOM05D001729 ORTHO05D001155 1.7e-10 70.9 170 29.4
AUR62006002 Chenopodium quinoa HOM05D001729 ORTHO05D001155 2.3e-10 70.5 170 29.4
QL05p012667 Quercus lobata HOM05D001729 ORTHO05D001155 1.1e-09 68.2 173 28.3
AUR62031620 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.5e-09 67.8 176 29.5
QL05p012608 Quercus lobata HOM05D001729 ORTHO05D001155 1.9e-09 67.4 173 28.3
QL05p014501 Quercus lobata HOM05D001729 ORTHO05D001155 7.3e-09 65.5 177 32.8
QL05p074214 Quercus lobata HOM05D001729 ORTHO05D001155 1.2e-08 64.7 176 31.2
Lsat_1_v5_gn_5_31100 Lactuca sativa HOM05D001729 ORTHO05D001155 3.6e-08 63.2 66 43.9
QL05p052800 Quercus lobata HOM05D001729 ORTHO05D001155 8.0e-08 62.0 184 28.8
HanXRQChr04g0121411 Helianthus annuus HOM05D001729 ORTHO05D001155 2.3e-07 60.5 65 46.2
DCAR_008830 Daucus carota HOM05D008898 ORTHO05D016080 3.1e-07 60.1 49 53.1
QL07p019801 Quercus lobata HOM05D001729 ORTHO05D001155 3.1e-07 60.1 177 27.1
Dinv04029 Davidia involucrata HOM05D001729 ORTHO05D001155 3.4e-06 56.6 292 24.0
Lsat_1_v5_gn_0_31161 Lactuca sativa HOM05D008898 ORTHO05D001155 4.4e-06 56.2 55 49.1
Phvul.009G222800 Phaseolus vulgaris HOM05D001729 ORTHO05D001155 7.5e-06 55.5 174 30.5


User provided reference genes

Program Settings