Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 7.1e-113 410.6 208 100.0
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 7.0e-76 287.7 300 57.0
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 7.0e-76 287.7 300 57.0
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.6e-75 286.6 304 56.2
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 2.0e-75 286.2 303 55.4
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 6.5e-74 281.2 296 55.1
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 6.5e-74 281.2 296 55.1
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 1.5e-73 280.0 296 54.7
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 4.2e-73 278.5 298 54.0
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 2.1e-72 276.2 271 58.7
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 2.7e-72 275.8 303 53.5
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 3.6e-72 275.4 296 54.1
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 1.0e-71 273.9 280 55.4
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 1.8e-71 273.1 298 54.0
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 5.2e-71 271.6 290 54.5
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 5.2e-71 271.6 299 52.2
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 8.8e-71 270.8 303 52.5
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 8.8e-71 270.8 310 52.6
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 8.8e-71 270.8 305 52.5
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 1.2e-70 270.4 307 51.8
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 3.4e-70 268.9 299 54.8
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 5.7e-70 268.1 303 51.2
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 1.3e-69 266.9 299 51.8
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 1.7e-69 266.5 306 52.9
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 6.3e-69 264.6 269 58.0
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 8.3e-69 264.2 287 53.7
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 1.4e-68 263.5 295 53.6
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.4e-68 263.5 271 55.7
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 1.4e-68 263.5 286 53.1
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 3.1e-68 262.3 296 52.7
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 7.0e-68 261.2 278 54.3
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 9.1e-68 260.8 295 51.9
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 2.0e-67 259.6 302 50.7
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 3.5e-67 258.8 304 50.3
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 4.5e-67 258.5 303 50.8
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 4.5e-67 258.5 304 50.0
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 1.0e-66 257.3 297 50.5
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 1.3e-66 256.9 298 51.3
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 1.7e-66 256.5 298 51.0
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 2.9e-66 255.8 297 51.9
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.8e-66 255.4 303 50.8
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 6.6e-66 254.6 298 50.3
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 4.2e-65 251.9 280 52.5
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 9.5e-65 250.8 286 51.7
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 1.2e-64 250.4 285 50.5
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 2.1e-64 249.6 257 54.9
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 2.1e-64 249.6 301 48.8
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 2.8e-64 249.2 271 54.2
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 2.8e-64 249.2 255 54.5
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 6.1e-64 248.1 297 49.2
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 1.0e-63 247.3 267 53.6
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 3.4e-62 242.3 295 50.8
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 1.7e-61 240.0 295 50.5
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 2.8e-61 239.2 273 52.0
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 1.8e-60 236.5 304 46.7
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 3.1e-60 235.7 299 45.8
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 5.4e-60 235.0 307 46.3
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 9.2e-60 234.2 294 49.3
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 9.2e-60 234.2 269 52.0
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.2e-59 233.8 289 49.8
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 1.0e-58 230.7 246 55.3
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 1.7e-58 229.9 300 44.7
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 2.9e-58 229.2 298 45.3
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 3.8e-58 228.8 304 46.7
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 5.0e-58 228.4 300 45.0
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 8.6e-58 227.6 316 43.4
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 8.6e-58 227.6 300 45.3
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 8.6e-58 227.6 346 42.5
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 2.5e-57 226.1 304 44.7
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 4.3e-57 225.3 304 44.4
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 4.3e-57 225.3 296 44.9
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 7.3e-57 224.6 309 43.7
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 1.6e-56 223.4 300 44.7
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 2.1e-56 223.0 310 43.5
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 2.1e-56 223.0 310 44.2
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 6.1e-56 221.5 338 41.1
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 6.8e-55 218.0 307 42.7
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 1.7e-53 213.4 295 44.4
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 1.9e-52 209.9 298 44.6
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 7.0e-52 208.0 281 44.1
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 1.2e-51 207.2 336 39.6
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 1.0e-50 204.1 274 48.2
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 8.6e-50 201.1 258 48.4
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 3.3e-49 199.1 304 43.4
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 4.3e-49 198.7 259 49.4
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 5.6e-49 198.4 408 35.5
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 2.8e-48 196.1 372 37.4
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 4.7e-48 195.3 248 46.8
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 1.4e-47 193.7 294 40.8
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 1.4e-47 193.7 228 49.6
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 1.8e-47 193.4 299 39.8
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 3.4e-46 189.1 157 63.1
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 9.2e-44 181.0 256 42.2
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 3.5e-43 179.1 256 41.8
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 7.8e-43 177.9 131 68.7
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 1.3e-42 177.2 154 56.5
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 5.6e-41 171.8 126 69.0
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 1.2e-38 164.1 299 35.1
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 2.4e-36 156.4 312 33.3
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 7.3e-33 144.8 168 50.6
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 9.5e-33 144.4 317 30.6
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 1.6e-32 143.7 257 34.6
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.9e-29 132.9 86 82.6
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 5.4e-28 128.6 192 43.8
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 7.1e-28 128.3 141 47.5
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 7.1e-28 128.3 86 76.7
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 4.3e-25 119.0 99 64.6
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 1.4e-23 114.0 90 65.6
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 2.6e-22 109.8 112 52.7
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 3.8e-21 105.9 91 58.2
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 1.1e-20 104.4 92 64.1
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 1.2e-19 100.9 170 41.2
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 4.6e-19 99.0 109 49.5
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 9.0e-15 84.7 103 46.6
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 1.2e-14 84.3 77 53.2
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 3.4e-14 82.8 93 49.5
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.9e-13 79.7 147 41.5
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 3.0e-10 69.7 36 91.7
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.9e-09 67.0 35 88.6
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 1.9e-09 67.0 36 86.1
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 1.5e-06 57.4 45 66.7
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 2.6e-06 56.6 77 41.6
TAR629G0960 Trochodendron aralioides HOM05D006011 ORTHO05D007421 2.6e-06 56.6 34 82.4


User provided reference genes

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