Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 2.0e-109 399.1 197 100.0
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 9.9e-64 247.3 197 61.4
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 1.3e-63 246.9 197 61.9
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 7.1e-62 241.1 178 64.0
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.2e-61 240.4 176 65.9
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 4.6e-61 238.4 198 60.6
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 1.0e-60 237.3 184 64.1
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 1.7e-60 236.5 197 57.4
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 1.7e-60 236.5 189 62.4
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 5.1e-60 235.0 186 59.7
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 6.6e-60 234.6 198 59.1
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 1.9e-59 233.0 201 61.2
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 2.5e-59 232.6 190 58.9
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 2.5e-59 232.6 179 60.9
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 4.3e-59 231.9 166 63.9
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 7.3e-59 231.1 162 63.6
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 9.6e-59 230.7 189 60.3
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 9.6e-59 230.7 195 57.9
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 9.6e-59 230.7 195 57.9
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 3.6e-58 228.8 180 59.4
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 4.8e-58 228.4 198 58.6
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 4.8e-58 228.4 188 57.4
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 6.2e-58 228.0 198 58.6
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 8.1e-58 227.6 192 55.7
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 8.1e-58 227.6 179 62.0
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 1.1e-57 227.3 180 58.9
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 1.1e-57 227.3 194 59.3
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 1.1e-57 227.3 156 67.9
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 1.4e-57 226.9 155 65.8
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 1.4e-57 226.9 189 58.2
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 1.8e-57 226.5 165 62.4
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 2.4e-57 226.1 185 60.0
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 3.1e-57 225.7 197 56.9
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 3.1e-57 225.7 194 57.7
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 3.1e-57 225.7 186 60.2
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 4.0e-57 225.3 186 60.8
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 6.9e-57 224.6 179 60.9
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 6.9e-57 224.6 192 57.8
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 6.9e-57 224.6 198 57.1
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 6.9e-57 224.6 176 59.7
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 6.9e-57 224.6 193 57.5
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 6.9e-57 224.6 176 63.1
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 6.9e-57 224.6 184 60.3
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 9.0e-57 224.2 179 59.2
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 9.0e-57 224.2 161 63.4
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 9.0e-57 224.2 197 56.9
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 9.0e-57 224.2 187 57.2
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 1.2e-56 223.8 188 59.6
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 1.2e-56 223.8 184 59.8
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 1.5e-56 223.4 179 58.7
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 1.5e-56 223.4 188 58.5
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 1.5e-56 223.4 168 63.7
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 2.0e-56 223.0 191 59.2
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 2.0e-56 223.0 184 58.7
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 3.4e-56 222.2 190 56.3
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 3.4e-56 222.2 192 57.3
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 3.4e-56 222.2 185 60.0
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 4.5e-56 221.9 196 54.6
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 5.8e-56 221.5 179 61.5
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 5.8e-56 221.5 188 57.4
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 5.8e-56 221.5 194 56.2
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 5.8e-56 221.5 186 54.3
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 9.9e-56 220.7 176 57.4
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 1.3e-55 220.3 154 63.6
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 1.7e-55 219.9 189 57.7
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 1.7e-55 219.9 188 58.5
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 2.2e-55 219.5 180 57.8
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 4.9e-55 218.4 180 57.2
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 4.9e-55 218.4 180 57.2
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 4.9e-55 218.4 185 60.0
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 8.4e-55 217.6 189 57.1
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 8.4e-55 217.6 188 58.0
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 8.4e-55 217.6 193 53.9
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 1.1e-54 217.2 160 63.1
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 1.1e-54 217.2 191 55.0
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 1.4e-54 216.9 179 58.7
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 3.2e-54 215.7 190 55.8
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 3.2e-54 215.7 190 56.3
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 5.4e-54 214.9 192 56.2
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 5.4e-54 214.9 194 54.1
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 5.4e-54 214.9 194 55.7
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 7.1e-54 214.5 182 56.0
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 7.1e-54 214.5 188 58.0
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 7.1e-54 214.5 151 64.2
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 2.1e-53 213.0 200 54.0
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 2.7e-53 212.6 194 54.1
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 3.5e-53 212.2 196 53.1
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 3.5e-53 212.2 186 55.4
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 3.5e-53 212.2 151 62.9
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 3.5e-53 212.2 188 56.4
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 4.6e-53 211.8 171 56.1
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 6.0e-53 211.5 156 60.3
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 7.9e-53 211.1 186 56.5
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 7.9e-53 211.1 190 56.3
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 1.3e-52 210.3 156 62.2
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 1.8e-52 209.9 195 56.4
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 3.9e-52 208.8 190 56.3
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 5.1e-52 208.4 194 55.7
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 1.6e-50 203.4 190 53.2
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 5.8e-48 194.9 221 48.0
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 7.6e-48 194.5 163 58.3
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 3.8e-47 192.2 149 56.4
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 3.8e-47 192.2 182 49.5
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 1.2e-45 187.2 172 50.0
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 2.1e-45 186.4 161 59.6
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 3.5e-45 185.7 151 55.0
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 2.3e-44 183.0 183 48.1
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 2.1e-42 176.4 191 45.5
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 8.2e-42 174.5 199 48.7
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 4.0e-41 172.2 182 46.2
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 2.2e-39 166.4 159 47.8
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 1.4e-38 163.7 156 49.4
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.3e-36 157.1 132 61.4
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 4.3e-35 152.1 116 60.3
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 4.3e-35 152.1 144 56.2
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.8e-34 149.4 158 44.3
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.8e-34 149.4 158 44.3
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.1e-33 147.5 100 67.0
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 1.4e-33 147.1 126 58.7
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 4.1e-33 145.6 124 55.6
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.0e-32 143.3 150 44.0
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 8.8e-28 127.9 130 52.3
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 1.4e-25 120.6 157 38.9
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 1.8e-17 93.6 95 44.2
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 3.5e-16 89.4 72 52.8
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 2.2e-15 86.7 145 31.7
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 2.2e-15 86.7 71 53.5
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 8.5e-15 84.7 106 40.6
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 2.5e-14 83.2 70 51.4
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 1.2e-13 80.9 64 54.7
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.6e-13 80.5 65 56.9
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 2.3e-12 76.6 144 27.1
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 2.0e-11 73.6 45 66.7
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 9.7e-11 71.2 146 25.3
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 4.8e-10 68.9 72 48.6
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 6.3e-10 68.6 65 56.9


User provided reference genes

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