Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 6.1e-98 360.9 196 100.0
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 7.0e-94 347.4 196 94.4
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 7.7e-93 344.0 196 94.4
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 2.9e-92 342.0 196 93.9
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 6.5e-92 340.9 196 93.9
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.5e-91 339.7 196 92.9
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 1.2e-90 336.7 196 91.8
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 1.6e-90 336.3 196 90.3
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 4.7e-90 334.7 196 90.8
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.7e-90 334.7 196 90.8
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 1.0e-89 333.6 196 90.3
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.0e-89 333.6 196 89.3
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.8e-89 332.8 196 90.3
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 1.8e-89 332.8 196 90.8
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.8e-89 332.8 196 89.8
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 4.0e-89 331.6 196 90.3
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 4.0e-89 331.6 196 89.8
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 5.2e-89 331.3 196 90.3
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 1.2e-88 330.1 196 90.3
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 4.4e-88 328.2 196 89.3
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 4.4e-88 328.2 196 88.8
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 7.5e-88 327.4 196 88.8
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 9.8e-88 327.0 195 89.7
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 2.8e-87 325.5 196 88.8
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 3.7e-87 325.1 196 88.8
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 3.7e-87 325.1 196 86.2
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 3.7e-87 325.1 196 88.3
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 4.9e-87 324.7 196 88.3
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 6.3e-87 324.3 196 86.7
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 1.4e-86 323.2 196 86.7
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 1.4e-86 323.2 196 87.2
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 2.4e-86 322.4 196 87.8
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 5.4e-86 321.2 196 85.7
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 1.2e-85 320.1 196 86.7
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 2.7e-85 318.9 196 85.7
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 2.7e-85 318.9 196 84.7
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 3.5e-85 318.5 196 86.2
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 4.5e-85 318.2 196 86.7
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 1.0e-84 317.0 196 85.7
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 1.7e-84 316.2 196 85.2
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 1.7e-84 316.2 196 83.7
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.7e-84 316.2 196 86.2
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.7e-84 316.2 196 86.2
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 2.3e-84 315.8 196 86.2
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 2.9e-84 315.5 196 84.2
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 5.0e-84 314.7 196 84.7
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 8.6e-84 313.9 196 85.2
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 1.1e-83 313.5 196 84.2
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 1.9e-83 312.8 196 85.2
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.9e-83 312.8 196 84.7
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 1.9e-83 312.8 196 84.7
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.5e-83 312.4 196 84.2
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 3.3e-83 312.0 196 85.2
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 3.3e-83 312.0 196 83.7
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 3.3e-83 312.0 237 74.7
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 4.3e-83 311.6 196 85.2
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 5.6e-83 311.2 196 84.2
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 5.6e-83 311.2 196 85.2
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 7.3e-83 310.8 196 83.7
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 1.2e-82 310.1 196 83.7
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 1.2e-82 310.1 196 84.7
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 2.1e-82 309.3 196 82.7
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 3.6e-82 308.5 196 82.7
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.6e-82 308.5 196 83.7
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.7e-82 308.1 181 89.5
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 6.1e-82 307.8 196 83.7
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 6.1e-82 307.8 196 84.2
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 3.0e-81 305.4 175 92.0
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 1.5e-80 303.1 196 82.1
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 2.6e-80 302.4 196 82.7
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 9.8e-80 300.4 196 81.6
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 1.7e-79 299.7 196 80.1
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 2.9e-79 298.9 196 81.1
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 2.9e-79 298.9 196 82.7
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 8.3e-79 297.4 197 80.2
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 1.4e-78 296.6 197 80.2
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 3.2e-78 295.4 196 80.1
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 5.4e-78 294.7 197 79.2
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 7.0e-78 294.3 196 80.1
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 9.2e-78 293.9 175 88.6
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.2e-77 293.5 196 78.1
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 1.2e-77 293.5 196 79.6
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 7.8e-77 290.8 248 67.3
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.0e-76 290.4 196 78.1
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 1.3e-76 290.0 196 78.6
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 1.3e-76 290.0 197 80.2
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 2.3e-76 289.3 197 79.2
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 2.3e-76 289.3 196 77.6
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 3.0e-76 288.9 175 86.3
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 5.0e-76 288.1 197 77.7
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 1.9e-75 286.2 197 79.7
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 2.1e-74 282.7 196 75.5
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 3.6e-74 282.0 196 75.5
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 3.6e-74 282.0 196 75.5
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 3.6e-74 282.0 196 75.5
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 4.7e-74 281.6 196 75.5
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 4.7e-74 281.6 196 75.0
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 6.2e-74 281.2 196 75.5
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 6.2e-74 281.2 197 77.2
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.1e-73 280.4 195 74.9
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 1.1e-73 280.4 196 75.5
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.1e-73 280.4 196 75.5
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 1.4e-73 280.0 196 76.5
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 3.1e-73 278.9 196 74.5
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 3.1e-73 278.9 196 75.0
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 3.1e-73 278.9 196 75.0
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 3.1e-73 278.9 196 74.5
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 3.1e-73 278.9 196 75.0
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 3.1e-73 278.9 196 74.5
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 5.2e-73 278.1 196 76.0
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 6.8e-73 277.7 196 74.5
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 6.8e-73 277.7 196 74.5
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 6.8e-73 277.7 196 74.5
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 6.8e-73 277.7 196 74.5
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 8.9e-73 277.3 196 74.0
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 1.5e-72 276.6 196 73.5
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 2.6e-72 275.8 196 74.5
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 3.4e-72 275.4 196 75.0
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 3.4e-72 275.4 196 75.0
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 7.5e-72 274.2 178 81.5
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 1.7e-71 273.1 196 73.5
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.7e-71 273.1 211 72.0
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 2.2e-71 272.7 211 72.0
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 2.2e-71 272.7 196 71.4
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 2.9e-71 272.3 196 71.4
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 1.1e-70 270.4 196 71.9
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 1.1e-70 270.4 245 62.9
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 6.0e-69 264.6 175 78.9
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 2.6e-64 249.2 188 69.7
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.7e-63 246.5 196 71.9
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 2.8e-58 229.2 134 88.8
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 1.5e-56 223.4 175 72.0
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 2.2e-55 219.5 155 76.1
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 1.9e-54 216.5 134 82.8
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 1.9e-54 216.5 197 62.4
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 1.8e-49 199.9 155 67.1
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 4.9e-47 191.8 178 61.8
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 3.0e-44 182.6 149 70.5
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 1.9e-38 163.3 112 75.9
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.6e-32 142.9 188 51.6
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 1.3e-31 140.6 196 41.8
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 1.8e-28 130.2 196 37.8
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.8e-28 130.2 134 57.5
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 4.3e-27 125.6 132 57.6
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 7.4e-27 124.8 236 41.1
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 1.6e-26 123.6 85 74.1
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 3.1e-25 119.4 196 37.8
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 6.0e-21 105.1 192 35.9
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 1.0e-20 104.4 190 34.2
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 4.8e-18 95.5 63 82.5
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.0e-16 90.1 156 44.9
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 1.2e-13 80.9 64 65.6
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 2.7e-13 79.7 48 83.3
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 1.0e-12 77.8 64 68.8
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 1.1e-11 74.3 52 67.3
SMO367G0772 Selaginella moellendorffii HOM05D002293 ORTHO05D005475 4.1e-09 65.9 195 29.7
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 2.2e-07 60.1 41 80.5
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 2.9e-07 59.7 40 82.5
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 2.5e-06 56.6 92 44.6


User provided reference genes

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