Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A339T40 Lonicera japonica HOM05D004094 ORTHO05D004601 9.3e-71 270.0 128 100.0
Lsat_1_v5_gn_5_126560 Lactuca sativa HOM05D004094 ORTHO05D004601 8.2e-43 177.2 116 74.1
TAR625G0515 Trochodendron aralioides HOM05D004094 ORTHO05D004601 2.4e-42 175.6 120 68.3
Hma1.2p1_0186F.1_g081720 Hydrangea macrophylla HOM05D004094 ORTHO05D004601 6.9e-42 174.1 118 70.3
DCAR_014092 Daucus carota HOM05D004094 ORTHO05D004601 4.5e-41 171.4 121 71.9
ECA234G0673 Erigeron canadensis HOM05D004094 ORTHO05D004601 1.0e-40 170.2 117 70.1
CSS0004297 Camellia sinensis var. sinensis HOM05D004094 ORTHO05D004601 1.3e-40 169.9 118 68.6
Oeu047946.1 Olea europaea HOM05D004094 ORTHO05D004601 1.7e-40 169.5 121 64.5
HanXRQChr10g0304931 Helianthus annuus HOM05D004094 ORTHO05D004601 3.8e-40 168.3 120 70.8
EL10Ac1g01050 Beta vulgaris HOM05D004094 ORTHO05D004601 1.1e-39 166.8 116 68.1
Cc00_g04280 Coffea canephora HOM05D004094 ORTHO05D004601 7.2e-39 164.1 128 62.5
CiPaw.05G222800 Carya illinoinensis HOM05D004094 ORTHO05D004601 1.6e-38 162.9 115 67.8
Cfa016008 Carpinus fangiana HOM05D004094 ORTHO05D004601 2.1e-38 162.5 117 64.1
MSTRG.1451 Avicennia marina HOM05D004094 ORTHO05D004601 4.6e-38 161.4 118 65.3
Migut.C01138 Erythranthe guttata HOM05D004094 ORTHO05D004601 4.6e-38 161.4 118 62.7
Hund16854 Selenicereus undatus HOM05D004094 ORTHO05D004601 6.1e-38 161.0 116 64.7
SalBow7G0426 Salvia bowleyana HOM05D004094 ORTHO05D004601 1.4e-37 159.8 118 65.3
Solyc06g060350.4 Solanum lycopersicum HOM05D004094 ORTHO05D004601 1.4e-37 159.8 118 66.9
DCAR_017419 Daucus carota HOM05D004094 ORTHO05D004601 1.8e-37 159.5 116 69.8
Sopen06g020480 Solanum pennellii HOM05D004094 ORTHO05D004601 1.8e-37 159.5 118 66.9
Nitab4.5_0004044g0030 Nicotiana tabacum HOM05D004094 ORTHO05D004601 3.0e-37 158.7 118 67.8
Peaxi162Scf00051g00911 Petunia axillaris HOM05D004094 ORTHO05D004601 1.5e-36 156.4 122 63.9
Thecc.08G123800 Theobroma cacao HOM05D004094 ORTHO05D004601 1.5e-36 156.4 115 65.2
Nn1g08759 Nelumbo nucifera HOM05D004094 ORTHO05D004601 3.3e-36 155.2 122 58.2
BcaB05g25063 Brassica carinata HOM05D004094 ORTHO05D004601 4.3e-36 154.8 116 60.3
Nitab4.5_0000633g0220 Nicotiana tabacum HOM05D004094 ORTHO05D004601 4.3e-36 154.8 118 66.9
Rhsim06G0104600 Rhododendron simsii HOM05D004094 ORTHO05D004601 4.3e-36 154.8 115 66.1
Sc23g0000720 Simmondsia chinensis HOM05D004094 ORTHO05D004601 4.3e-36 154.8 116 64.7
Thhalv10018028m.g Eutrema salsugineum HOM05D004094 ORTHO05D004601 7.4e-36 154.1 116 59.5
Manes.02G162400 Manihot esculenta HOM05D004094 ORTHO05D004601 1.7e-35 152.9 124 58.1
AUR62019047 Chenopodium quinoa HOM05D004094 ORTHO05D004601 2.8e-35 152.1 116 65.5
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 6.3e-35 151.0 116 58.6
BcaC03g15753 Brassica carinata HOM05D004094 ORTHO05D004601 8.2e-35 150.6 116 58.6
AUR62027887 Chenopodium quinoa HOM05D004094 ORTHO05D004601 8.2e-35 150.6 116 65.5
Sabra02G0066100 Salix brachista HOM05D004094 ORTHO05D004601 8.2e-35 150.6 123 57.7
C02p34910 Brassica napus HOM05D004094 ORTHO05D004601 1.8e-34 149.4 115 59.1
Cpa.g.sc36.56 Carica papaya HOM05D004094 ORTHO05D004601 2.4e-34 149.1 116 60.3
Ca_15191_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 2.4e-34 149.1 117 55.6
Potri.005G177000 Populus trichocarpa HOM05D004094 ORTHO05D004601 2.4e-34 149.1 120 60.0
Sp5g32780 Schrenkiella parvula HOM05D004094 ORTHO05D004601 2.4e-34 149.1 116 57.8
Gohir.D06G044700 Gossypium hirsutum HOM05D004094 ORTHO05D004601 3.1e-34 148.7 117 61.5
Sc01g0001180 Simmondsia chinensis HOM05D004094 ORTHO05D004601 3.1e-34 148.7 116 62.1
SGA_v2.0_scaffold24G10467 Striga asiatica HOM05D004094 ORTHO05D004601 4.1e-34 148.3 118 62.7
ATR0684G176 Amborella trichopoda HOM05D004094 ORTHO05D004601 5.3e-34 147.9 116 59.5
CARHR071130 Cardamine hirsuta HOM05D004094 ORTHO05D004601 5.3e-34 147.9 116 58.6
Ciclev10000067m.g Citrus clementina HOM05D004094 ORTHO05D004601 5.3e-34 147.9 116 60.3
Gohir.A06G043800 Gossypium hirsutum HOM05D004094 ORTHO05D004601 5.3e-34 147.9 117 60.7
Gorai.010G049800 Gossypium raimondii HOM05D004094 ORTHO05D004601 5.3e-34 147.9 118 60.2
BraA02t07168Z Brassica rapa HOM05D004094 ORTHO05D004601 6.9e-34 147.5 115 59.1
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 9.1e-34 147.1 116 56.9
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 9.1e-34 147.1 116 56.9
vmacro12538 Vaccinium macrocarpon HOM05D004094 ORTHO05D004601 1.2e-33 146.7 126 59.5
TPR.G24027 Trifolium pratense HOM05D004094 ORTHO05D004601 1.5e-33 146.4 117 56.4
AT1G77620 Arabidopsis thaliana HOM05D004094 ORTHO05D004601 2.0e-33 146.0 116 56.9
Potri.002G084700 Populus trichocarpa HOM05D004094 ORTHO05D004601 2.6e-33 145.6 123 56.9
Dinv07237 Davidia involucrata HOM05D004094 ORTHO05D004601 3.4e-33 145.2 119 62.2
Actinidia02613 Actinidia chinensis HOM05D004094 ORTHO05D004601 4.5e-33 144.8 115 61.7
Lj1g0022360 Lotus japonicus HOM05D004094 ORTHO05D004601 5.9e-33 144.4 118 55.1
CANSAT64G2400 Cannabis sativa HOM05D004094 ORTHO05D004601 7.7e-33 144.1 115 60.0
Ca_14821_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 7.7e-33 144.1 117 53.8
PSO782G4804 Papaver somniferum HOM05D004094 ORTHO05D004601 7.7e-33 144.1 118 61.0
TWI12G0492 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 1.0e-32 143.7 119 58.8
Duzib093G2002 Durio zibethinus HOM05D004094 ORTHO05D004601 2.2e-32 142.5 124 58.1
PSO170G3655 Papaver somniferum HOM05D004094 ORTHO05D004601 2.9e-32 142.1 118 60.2
Aa31LG4G7730 Aethionema arabicum HOM05D004094 ORTHO05D004601 3.8e-32 141.7 116 53.4
unitig_26.g9911 Utricularia gibba HOM05D004094 ORTHO05D004601 3.8e-32 141.7 118 57.6
Duzib041G0387 Durio zibethinus HOM05D004094 ORTHO05D004601 5.0e-32 141.4 115 60.0
Prupe.1G499900 Prunus persica HOM05D004094 ORTHO05D004601 8.5e-32 140.6 115 60.0
Sabra05G0133600 Salix brachista HOM05D004094 ORTHO05D004601 8.5e-32 140.6 120 55.8
Medtr3g072400 Medicago truncatula HOM05D004094 ORTHO05D004601 1.1e-31 140.2 118 52.5
Psat3g082880 Pisum sativum HOM05D004094 ORTHO05D004601 1.1e-31 140.2 116 55.2
Psat5g131960 Pisum sativum HOM05D004094 ORTHO05D004601 1.1e-31 140.2 120 53.3
QL09p035258 Quercus lobata HOM05D004094 ORTHO05D004601 1.1e-31 140.2 148 50.0
Lj1g0018898 Lotus japonicus HOM05D004094 ORTHO05D004601 1.4e-31 139.8 118 57.6
Psat1g217360 Pisum sativum HOM05D004094 ORTHO05D004601 1.4e-31 139.8 116 55.2
TPR.G25784 Trifolium pratense HOM05D004094 ORTHO05D004601 1.4e-31 139.8 118 55.1
Glyma.04G250200 Glycine max HOM05D004094 ORTHO05D004601 1.9e-31 139.4 119 53.8
Aqoxy6G00193 Aquilegia oxysepala HOM05D004094 ORTHO05D004601 2.5e-31 139.0 115 57.4
BcaC08g47600 Brassica carinata HOM05D004094 ORTHO05D004601 3.2e-31 138.7 116 56.9
C06p51630 Brassica napus HOM05D004094 ORTHO05D004601 3.2e-31 138.7 116 56.9
BolC6t40183H Brassica oleracea HOM05D004094 ORTHO05D004601 3.2e-31 138.7 116 56.9
PGR042G1714 Punica granatum HOM05D004094 ORTHO05D004601 5.5e-31 137.9 122 54.9
A07p43010 Brassica napus HOM05D004094 ORTHO05D004601 7.2e-31 137.5 116 56.0
BraA07t31822Z Brassica rapa HOM05D004094 ORTHO05D004601 7.2e-31 137.5 116 56.0
Lalb_Chr04g0253401 Lupinus albus HOM05D004094 ORTHO05D004601 1.2e-30 136.7 114 54.4
Lalb_Chr23g0271001 Lupinus albus HOM05D004094 ORTHO05D004601 1.2e-30 136.7 117 53.0
arahy.Tifrunner.gnm1.ann1.WV2Q7U Arachis hypogaea HOM05D004094 ORTHO05D004601 2.1e-30 136.0 121 52.9
Glyma.06G112600 Glycine max HOM05D004094 ORTHO05D004601 2.1e-30 136.0 116 53.4
GSVIVG01008880001 Vitis vinifera HOM05D004094 ORTHO05D004601 2.1e-30 136.0 126 56.3
Actinidia23072 Actinidia chinensis HOM05D004094 ORTHO05D004601 2.7e-30 135.6 105 64.8
Medtr1g030410 Medicago truncatula HOM05D004094 ORTHO05D004601 3.6e-30 135.2 117 53.8
arahy.Tifrunner.gnm1.ann1.1LZC07 Arachis hypogaea HOM05D004094 ORTHO05D004601 4.7e-30 134.8 120 52.5
Psat6g041960 Pisum sativum HOM05D004094 ORTHO05D004601 4.7e-30 134.8 125 53.6
Ca_12613_v3 Cicer arietinum L. HOM05D004094 ORTHO05D004601 1.0e-29 133.7 118 53.4
THA.LOC104800189 Tarenaya hassleriana HOM05D004094 ORTHO05D004601 6.7e-29 131.0 97 61.9
MD15G1351000 Malus domestica HOM05D004094 ORTHO05D004601 1.5e-28 129.8 120 55.8
CDE06G1261 Ceratophyllum demersum HOM05D004094 ORTHO05D004601 4.4e-28 128.3 120 53.3
Sed0014690 Sechium edule HOM05D004094 ORTHO05D004601 4.4e-28 128.3 122 52.5
HPP92_002183 Vanilla planifolia HOM05D004094 ORTHO05D004601 4.4e-28 128.3 114 56.1
CsaV3_4G028330 Cucumis sativus L. HOM05D004094 ORTHO05D004601 1.3e-27 126.7 122 51.6
RcHm_v2.0_Chr6g0295641 Rosa chinensis HOM05D004094 ORTHO05D004601 1.7e-27 126.3 118 53.4
COL.COLO4_35941 Corchorus olitorius HOM05D004094 ORTHO05D004601 4.8e-27 124.8 130 50.8
BolC2t09507H Brassica oleracea HOM05D004094 ORTHO05D004601 6.3e-27 124.4 97 57.7
FAN20G0223 Fragaria x ananassa HOM05D004094 ORTHO05D004601 1.4e-26 123.2 118 53.4
SHI23046 Sapria himalayana HOM05D004094 ORTHO05D004601 3.1e-26 122.1 121 50.4
FvH4_2g26770 Fragaria vesca HOM05D004094 ORTHO05D004601 5.3e-26 121.3 118 52.5
FAN24G0267 Fragaria x ananassa HOM05D004094 ORTHO05D004601 5.3e-26 121.3 118 52.5
Phvul.009G124500 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 9.1e-26 120.6 110 49.1
Sed0015071 Sechium edule HOM05D004094 ORTHO05D004601 1.2e-25 120.2 122 50.0
VMungo1309G1727 Vigna mungo HOM05D004094 ORTHO05D004601 1.5e-25 119.8 110 48.2
arahy.Tifrunner.gnm1.ann1.HK9WB5 Arachis hypogaea HOM05D004094 ORTHO05D004601 2.0e-25 119.4 152 40.8
arahy.Tifrunner.gnm1.ann1.3295S8 Arachis hypogaea HOM05D004094 ORTHO05D004601 2.6e-25 119.0 154 40.3
FAN15G0810 Fragaria x ananassa HOM05D004094 ORTHO05D004601 5.9e-25 117.9 118 52.5
Zm00001eb398150 Zea mays HOM05D004094 ORTHO05D004601 2.2e-24 115.9 117 48.7
AagrBONN_evm.TU.Sc2ySwM_368.377 Anthoceros agrestis HOM05D004094 ORTHO05D004601 2.9e-24 115.5 122 46.7
Os03g0262300 Oryza sativa ssp. japonica HOM05D004094 ORTHO05D004601 5.0e-24 114.8 118 51.7
Pp3c13_19570 Physcomitrium patens HOM05D004094 ORTHO05D004601 1.6e-22 109.8 119 47.9
Phvul.008G163600 Phaseolus vulgaris HOM05D004094 ORTHO05D004601 4.7e-22 108.2 104 49.0
Pp3c12_8350 Physcomitrium patens HOM05D004094 ORTHO05D004601 1.0e-21 107.1 117 49.6
Haze_00454 Corylus avellana HOM05D004094 ORTHO05D004601 8.8e-21 104.0 252 30.2
ClCG11G015680 Citrullus lanatus HOM05D004094 ORTHO05D004601 5.7e-20 101.3 118 45.8
MELO3C010472.2 Cucumis melo HOM05D004094 ORTHO05D004601 2.2e-19 99.4 142 40.8
VMungo0647G1825 Vigna mungo HOM05D004094 ORTHO05D004601 1.4e-18 96.7 108 45.4
Glyma.14G148700 Glycine max HOM05D004094 ORTHO05D004601 3.1e-18 95.5 117 42.7
Mapoly0007s0100 Marchantia polymorpha HOM05D004094 ORTHO05D004601 1.0e-16 90.5 115 43.5
CBR_g29736 Chara braunii HOM05D004094 ORTHO05D004601 6.5e-16 87.8 98 48.0
MBI03_g47842_MAGBIO Magnolia biondii HOM05D004094 ORTHO05D004601 2.1e-14 82.8 48 79.2
TWI77G0135 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 2.6e-12 75.9 72 51.4
SEGI_20546 Sequoiadendron giganteum HOM05D004094 ORTHO05D004601 1.2e-09 67.0 73 38.4
MCO09G770 Micromonas commoda HOM05D004094 ORTHO05D004601 2.9e-08 62.4 74 47.3
Cfa023858 Carpinus fangiana HOM05D004094 ORTHO05D004601 9.4e-07 57.4 55 45.5
Cre07.g347550 Chlamydomonas reinhardtii HOM05D004094 ORTHO05D004601 2.7e-06 55.8 152 28.9
TWI36G0013 Tripterygium wilfordii HOM05D004094 ORTHO05D004601 2.7e-06 55.8 58 46.6
Cfa027206 Carpinus fangiana HOM05D004618 ORTHO05D005318 3.6e-06 55.5 119 26.9
MBI03_g47843_MAGBIO Magnolia biondii HOM05D004094 ORTHO05D004601 3.6e-06 55.5 76 38.2
AUR62020811 Chenopodium quinoa HOM05D004618 ORTHO05D005318 8.0e-06 54.3 85 36.5


User provided reference genes

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