Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A299T13 Lonicera japonica HOM05D001824 ORTHO05D003650 1.2e-51 206.1 96 100.0
Actinidia23327 Actinidia chinensis HOM05D001824 ORTHO05D003650 4.7e-43 177.6 93 82.8
Dinv41685 Davidia involucrata HOM05D001824 ORTHO05D003650 4.7e-43 177.6 93 87.1
CiPaw.15G082900 Carya illinoinensis HOM05D001824 ORTHO05D003650 1.5e-41 172.6 93 81.7
AUR62023581 Chenopodium quinoa HOM05D001824 ORTHO05D003650 3.4e-41 171.4 95 77.9
PGR042G1800 Punica granatum HOM05D001824 ORTHO05D003650 3.4e-41 171.4 93 81.7
TAR381G1280 Trochodendron aralioides HOM05D001824 ORTHO05D003650 1.7e-40 169.1 93 78.5
CSS0006144 Camellia sinensis var. sinensis HOM05D001824 ORTHO05D003650 3.7e-40 167.9 93 81.7
Lsat_1_v5_gn_1_13101 Lactuca sativa HOM05D001824 ORTHO05D003650 4.9e-40 167.5 93 80.6
Peaxi162Scf00076g00117 Petunia axillaris HOM05D001824 ORTHO05D003650 1.1e-39 166.4 93 78.5
EL10Ac1g00065 Beta vulgaris HOM05D001824 ORTHO05D003650 1.4e-39 166.0 93 79.6
GSVIVG01034879001 Vitis vinifera HOM05D001824 ORTHO05D003650 1.4e-39 166.0 93 77.4
Prupe.8G053500 Prunus persica HOM05D001824 ORTHO05D003650 1.8e-39 165.6 93 79.6
Cpa.g.sc66.70 Carica papaya HOM05D001824 ORTHO05D003650 2.4e-39 165.2 94 79.8
SalBow7G1597 Salvia bowleyana HOM05D001824 ORTHO05D003650 3.2e-39 164.9 93 77.4
Actinidia39009 Actinidia chinensis HOM05D001824 ORTHO05D003650 4.1e-39 164.5 93 76.3
Cfa018206 Carpinus fangiana HOM05D001824 ORTHO05D003650 4.1e-39 164.5 93 77.4
Migut.C01233 Erythranthe guttata HOM05D001824 ORTHO05D003650 5.4e-39 164.1 93 75.3
Nn5g27813 Nelumbo nucifera HOM05D001824 ORTHO05D003650 5.4e-39 164.1 93 78.5
Hund27076 Selenicereus undatus HOM05D001824 ORTHO05D003650 5.4e-39 164.1 93 78.5
MSTRG.1506 Avicennia marina HOM05D001824 ORTHO05D003650 7.0e-39 163.7 93 75.3
Gohir.D02G066300 Gossypium hirsutum HOM05D001824 ORTHO05D003650 1.2e-38 162.9 93 76.3
Gorai.005G075200 Gossypium raimondii HOM05D001824 ORTHO05D003650 1.2e-38 162.9 93 76.3
Actinidia00182 Actinidia chinensis HOM05D001824 ORTHO05D003650 1.6e-38 162.5 93 74.2
Lalb_Chr02g0141871 Lupinus albus HOM05D001824 ORTHO05D003650 1.6e-38 162.5 93 75.3
TAR628G0935 Trochodendron aralioides HOM05D001824 ORTHO05D003650 2.0e-38 162.2 93 75.3
Oeu000556.1 Olea europaea HOM05D001824 ORTHO05D003650 2.3e-37 158.7 91 76.9
MD05G1040100 Malus domestica HOM05D001824 ORTHO05D003650 2.9e-37 158.3 93 74.2
PSO170G0387 Papaver somniferum HOM05D001824 ORTHO05D003650 2.9e-37 158.3 92 73.9
RcHm_v2.0_Chr6g0272221 Rosa chinensis HOM05D001824 ORTHO05D003650 2.9e-37 158.3 93 74.2
PSO017G6536 Papaver somniferum HOM05D001824 ORTHO05D003650 5.0e-37 157.5 92 73.9
RcHm_v2.0_Chr6g0272251 Rosa chinensis HOM05D001824 ORTHO05D003650 5.0e-37 157.5 93 73.1
MD10G1046100 Malus domestica HOM05D001824 ORTHO05D003650 1.1e-36 156.4 93 73.1
CSS0044013 Camellia sinensis var. sinensis HOM05D001824 ORTHO05D003650 1.5e-36 156.0 93 72.0
Hma1.2p1_0004F.1_g004090 Hydrangea macrophylla HOM05D001824 ORTHO05D003650 1.5e-36 156.0 93 74.2
Psat6g186240 Pisum sativum HOM05D001824 ORTHO05D003650 1.9e-36 155.6 93 73.1
Lalb_Chr21g0305841 Lupinus albus HOM05D001824 ORTHO05D003650 3.3e-36 154.8 93 71.0
vmacro01721 Vaccinium macrocarpon HOM05D001824 ORTHO05D003650 3.3e-36 154.8 95 70.5
TPR.G1771 Trifolium pratense HOM05D001824 ORTHO05D003650 4.3e-36 154.5 92 69.6
Manes.02G190500 Manihot esculenta HOM05D001824 ORTHO05D003650 9.5e-36 153.3 93 72.0
HanXRQChr02g0041851 Helianthus annuus HOM05D001824 ORTHO05D003650 1.2e-35 152.9 93 76.3
Atru.chr13.1842 Acer truncatum HOM05D001824 ORTHO05D003650 1.6e-35 152.5 94 72.3
PGR042G3057 Punica granatum HOM05D001824 ORTHO05D003650 1.6e-35 152.5 93 71.0
QL02p034137 Quercus lobata HOM05D001824 ORTHO05D003650 1.6e-35 152.5 93 73.1
GSVIVG01023264001 Vitis vinifera HOM05D001824 ORTHO05D003650 1.6e-35 152.5 94 74.5
arahy.Tifrunner.gnm1.ann1.9S5M62 Arachis hypogaea HOM05D001824 ORTHO05D003650 2.1e-35 152.1 93 72.0
arahy.Tifrunner.gnm1.ann1.Y5PHEB Arachis hypogaea HOM05D001824 ORTHO05D003650 2.1e-35 152.1 93 72.0
Lsat_1_v5_gn_9_119461 Lactuca sativa HOM05D001824 ORTHO05D003650 2.8e-35 151.8 93 67.7
Rhsim11G0124200 Rhododendron simsii HOM05D001824 ORTHO05D003650 2.8e-35 151.8 93 72.0
Aqoxy5G02576 Aquilegia oxysepala HOM05D001824 ORTHO05D003650 4.7e-35 151.0 93 71.0
VMungo0720G0126 Vigna mungo HOM05D001824 ORTHO05D003650 4.7e-35 151.0 93 71.0
DCAR_010072 Daucus carota HOM05D001824 ORTHO05D003650 8.0e-35 150.2 93 73.1
Phvul.007G090800 Phaseolus vulgaris HOM05D001824 ORTHO05D003650 1.0e-34 149.8 93 71.0
Duzib116G0086 Durio zibethinus HOM05D001824 ORTHO05D003650 1.4e-34 149.4 93 69.9
HanXRQChr16g0509431 Helianthus annuus HOM05D001824 ORTHO05D003650 1.4e-34 149.4 93 65.6
TWI60G0971 Tripterygium wilfordii HOM05D001824 ORTHO05D003650 1.4e-34 149.4 93 69.9
ECA240G4460 Erigeron canadensis HOM05D001824 ORTHO05D003650 1.8e-34 149.1 92 67.4
TWI14G1313 Tripterygium wilfordii HOM05D001824 ORTHO05D003650 1.8e-34 149.1 93 69.9
Gohir.A02G060800 Gossypium hirsutum HOM05D001824 ORTHO05D003650 2.3e-34 148.7 85 75.3
Glyma.10G214900 Glycine max HOM05D001824 ORTHO05D003650 3.1e-34 148.3 93 69.9
vmacro01719 Vaccinium macrocarpon HOM05D001824 ORTHO05D003650 3.1e-34 148.3 94 68.1
Eucgr.F02631 Eucalyptus grandis HOM05D001824 ORTHO05D003650 4.0e-34 147.9 93 68.8
Glyma.20G176900 Glycine max HOM05D001824 ORTHO05D003650 4.0e-34 147.9 93 69.9
Aa31LG6G8410 Aethionema arabicum HOM05D001824 ORTHO05D003650 5.2e-34 147.5 93 71.0
Lj5g0019829 Lotus japonicus HOM05D001824 ORTHO05D003650 5.2e-34 147.5 93 68.8
CDE02G0718 Ceratophyllum demersum HOM05D001824 ORTHO05D003650 6.8e-34 147.1 93 65.6
Peaxi162Scf00011g00097 Petunia axillaris HOM05D001824 ORTHO05D003650 6.8e-34 147.1 91 69.2
ECA247G2632 Erigeron canadensis HOM05D001824 ORTHO05D003650 8.9e-34 146.7 94 70.2
Psat6g186520 Pisum sativum HOM05D001824 ORTHO05D003650 1.2e-33 146.4 93 67.7
Ca_10601_v3 Cicer arietinum L. HOM05D001824 ORTHO05D003650 1.5e-33 146.0 93 67.7
vmacro01722 Vaccinium macrocarpon HOM05D001824 ORTHO05D003650 1.5e-33 146.0 93 67.7
Nitab4.5_0000948g0010 Nicotiana tabacum HOM05D001824 ORTHO05D003650 2.0e-33 145.6 93 67.7
FvH4_2g12290 Fragaria vesca HOM05D001824 ORTHO05D003650 2.6e-33 145.2 93 68.8
FAN20G0002 Fragaria x ananassa HOM05D001824 ORTHO05D003650 2.6e-33 145.2 93 68.8
FAN24G1226 Fragaria x ananassa HOM05D001824 ORTHO05D003650 2.6e-33 145.2 93 68.8
FAN27G0784 Fragaria x ananassa HOM05D001824 ORTHO05D003650 2.6e-33 145.2 93 68.8
THA.LOC104816249 Tarenaya hassleriana HOM05D001824 ORTHO05D003650 3.4e-33 144.8 93 68.8
Carub.0001s3247 Capsella rubella HOM05D001824 ORTHO05D003650 4.4e-33 144.4 93 69.9
Ca_10600_v3 Cicer arietinum L. HOM05D001824 ORTHO05D003650 4.4e-33 144.4 93 66.7
DCAR_014779 Daucus carota HOM05D001824 ORTHO05D003650 4.4e-33 144.4 92 70.7
PGR102G0680 Punica granatum HOM05D001824 ORTHO05D003650 4.4e-33 144.4 96 66.7
MBI16_g07679_MAGBIO Magnolia biondii HOM05D001824 ORTHO05D003650 5.8e-33 144.1 95 65.3
Medtr1g096200 Medicago truncatula HOM05D001824 ORTHO05D003650 5.8e-33 144.1 92 67.4
Rhsim06G0097900 Rhododendron simsii HOM05D001824 ORTHO05D003650 5.8e-33 144.1 174 45.4
THA.LOC104816259 Tarenaya hassleriana HOM05D001824 ORTHO05D003650 7.5e-33 143.7 93 67.7
MSTRG.27857 Avicennia marina HOM05D001824 ORTHO05D003650 1.7e-32 142.5 91 65.9
Oeu064614.1 Olea europaea HOM05D001824 ORTHO05D003650 1.7e-32 142.5 93 63.4
SHI09051 Sapria himalayana HOM05D001824 ORTHO05D003650 1.7e-32 142.5 93 64.5
HPP92_025040 Vanilla planifolia HOM05D001824 ORTHO05D003650 1.7e-32 142.5 93 64.5
SalBow3G0786 Salvia bowleyana HOM05D001824 ORTHO05D003650 2.2e-32 142.1 92 63.0
DCAR_014264 Daucus carota HOM05D001824 ORTHO05D003650 4.9e-32 141.0 93 67.7
COL.COLO4_17736 Corchorus olitorius HOM05D001824 ORTHO05D003650 6.4e-32 140.6 93 65.6
DCAR_006680 Daucus carota HOM05D001824 ORTHO05D003650 6.4e-32 140.6 94 62.8
AL1G48890 Arabidopsis lyrata HOM05D001824 ORTHO05D003650 1.4e-31 139.4 93 68.8
Migut.B00783 Erythranthe guttata HOM05D001824 ORTHO05D003650 1.4e-31 139.4 93 61.3
ATR0584G075 Amborella trichopoda HOM05D001824 ORTHO05D003650 1.9e-31 139.0 93 61.3
CAN.G798.57 Capsicum annuum HOM05D001824 ORTHO05D003650 1.9e-31 139.0 93 61.3
Gohir.A01G183000 Gossypium hirsutum HOM05D001824 ORTHO05D003650 1.9e-31 139.0 93 65.6
Gohir.D01G174100 Gossypium hirsutum HOM05D001824 ORTHO05D003650 1.9e-31 139.0 93 65.6
Gorai.002G216200 Gossypium raimondii HOM05D001824 ORTHO05D003650 1.9e-31 139.0 93 65.6
Zm00001eb146430 Zea mays HOM05D001824 ORTHO05D003650 1.9e-31 139.0 93 63.4
CARHR033790 Cardamine hirsuta HOM05D001824 ORTHO05D003650 3.2e-31 138.3 93 65.6
Thecc.02G019900 Theobroma cacao HOM05D001824 ORTHO05D003650 4.1e-31 137.9 93 65.6
Cc02_g23040 Coffea canephora HOM05D001824 ORTHO05D003650 7.0e-31 137.1 93 62.4
MD16G1208100 Malus domestica HOM05D001824 ORTHO05D003650 7.0e-31 137.1 88 68.2
Os01g0871100 Oryza sativa ssp. japonica HOM05D001824 ORTHO05D003650 1.2e-30 136.3 93 63.4
Sp1g29550 Schrenkiella parvula HOM05D001824 ORTHO05D003650 1.2e-30 136.3 93 67.7
SGA_v2.0_scaffold8G04436 Striga asiatica HOM05D001824 ORTHO05D003650 1.6e-30 136.0 93 60.2
Manes.10G119300 Manihot esculenta HOM05D001824 ORTHO05D003650 2.0e-30 135.6 93 63.4
TPR.G1781 Trifolium pratense HOM05D001824 ORTHO05D003650 2.0e-30 135.6 92 63.0
Ciclev10003421m.g Citrus clementina HOM05D001824 ORTHO05D003650 2.7e-30 135.2 93 62.4
Medtr1g096050 Medicago truncatula HOM05D001824 ORTHO05D003650 2.7e-30 135.2 93 63.4
BraA09t38757Z Brassica rapa HOM05D001824 ORTHO05D003650 3.5e-30 134.8 92 66.3
Os05g0432600 Oryza sativa ssp. japonica HOM05D001824 ORTHO05D003650 3.5e-30 134.8 93 61.3
Atru.chr6.813 Acer truncatum HOM05D001824 ORTHO05D003650 4.6e-30 134.4 94 61.7
Zm00001eb289220 Zea mays HOM05D001824 ORTHO05D003650 4.6e-30 134.4 93 62.4
A09p32130 Brassica napus HOM05D001824 ORTHO05D003650 6.0e-30 134.0 92 66.3
MD13G1206800 Malus domestica HOM05D001824 ORTHO05D003650 7.8e-30 133.7 95 62.1
unitig_747.g21267 Utricularia gibba HOM05D001824 ORTHO05D003650 7.8e-30 133.7 88 65.9
AT1G34340 Arabidopsis thaliana HOM05D001824 ORTHO05D003650 1.3e-29 132.9 93 64.5
Solyc01g103670.4 Solanum lycopersicum HOM05D001824 ORTHO05D003650 1.3e-29 132.9 93 60.2
Migut.N00827 Erythranthe guttata HOM05D001824 ORTHO05D003650 1.7e-29 132.5 89 62.9
Lsat_1_v5_gn_9_120361 Lactuca sativa HOM05D001824 ORTHO05D003650 1.7e-29 132.5 92 62.0
Potri.004G223100 Populus trichocarpa HOM05D001824 ORTHO05D003650 2.3e-29 132.1 93 61.3
BcaC08g43784 Brassica carinata HOM05D001824 ORTHO05D003650 3.0e-29 131.7 92 65.2
BolC6t36296H Brassica oleracea HOM05D001824 ORTHO05D003650 3.0e-29 131.7 92 65.2
DCAR_014265 Daucus carota HOM05D001824 ORTHO05D003650 3.0e-29 131.7 93 62.4
Glyma.20G177000 Glycine max HOM05D001824 ORTHO05D003650 3.0e-29 131.7 92 62.0
BcaB07g33133 Brassica carinata HOM05D001824 ORTHO05D003650 3.9e-29 131.3 92 65.2
Solyc01g103650.3 Solanum lycopersicum HOM05D001824 ORTHO05D003650 3.9e-29 131.3 93 59.1
C06p11660 Brassica napus HOM05D001824 ORTHO05D003650 5.0e-29 131.0 92 66.3
FAN12G3447 Fragaria x ananassa HOM05D001824 ORTHO05D003650 5.0e-29 131.0 91 61.5
Sopen01g046060 Solanum pennellii HOM05D001824 ORTHO05D003650 5.0e-29 131.0 93 59.1
BolC8t47867H Brassica oleracea HOM05D001824 ORTHO05D003650 6.6e-29 130.6 93 64.5
Thhalv10007321m.g Eutrema salsugineum HOM05D001824 ORTHO05D003650 1.1e-28 129.8 93 63.4
Phvul.007G091100 Phaseolus vulgaris HOM05D001824 ORTHO05D003650 1.1e-28 129.8 92 58.7
Sopen01g046070 Solanum pennellii HOM05D001824 ORTHO05D003650 1.1e-28 129.8 89 60.7
CANSAT35G1967 Cannabis sativa HOM05D001824 ORTHO05D003650 1.5e-28 129.4 72 77.8
Solyc01g103660.4 Solanum lycopersicum HOM05D001824 ORTHO05D003650 2.5e-28 128.6 89 60.7
Sopen01g046080 Solanum pennellii HOM05D001824 ORTHO05D003650 3.3e-28 128.3 89 60.7
ECA236G0739 Erigeron canadensis HOM05D001824 ORTHO05D003650 4.3e-28 127.9 91 59.3
CAN.G798.60 Capsicum annuum HOM05D001824 ORTHO05D003650 7.3e-28 127.1 93 57.0
Nitab4.5_0002596g0110 Nicotiana tabacum HOM05D001824 ORTHO05D003650 7.3e-28 127.1 89 64.0
Duzib248G0420 Durio zibethinus HOM05D001824 ORTHO05D003650 9.5e-28 126.7 93 61.3
CAN.G798.58 Capsicum annuum HOM05D001824 ORTHO05D003650 2.1e-27 125.6 93 53.8
Nitab4.5_0002596g0130 Nicotiana tabacum HOM05D001824 ORTHO05D003650 8.0e-27 123.6 93 61.3
Gohir.D12G043000 Gossypium hirsutum HOM05D001824 ORTHO05D003650 1.1e-26 123.2 93 60.2
Gorai.008G045200 Gossypium raimondii HOM05D001824 ORTHO05D003650 1.1e-26 123.2 93 60.2
HanXRQChr01g0027181 Helianthus annuus HOM05D001824 ORTHO05D003650 1.1e-26 123.2 92 59.8
THA.LOC104800038 Tarenaya hassleriana HOM05D001824 ORTHO05D003650 1.1e-26 123.2 94 60.6
HanXRQChr07g0187341 Helianthus annuus HOM05D001824 ORTHO05D003650 1.4e-26 122.9 92 58.7
ClCG11G013300 Citrullus lanatus HOM05D001824 ORTHO05D003650 2.3e-26 122.1 93 60.2
CsaV3_5G029820 Cucumis sativus L. HOM05D001824 ORTHO05D003650 3.1e-26 121.7 93 60.2
Sabra13G0097300 Salix brachista HOM05D001824 ORTHO05D003650 8.9e-26 120.2 93 55.9
CAN.G798.59 Capsicum annuum HOM05D001824 ORTHO05D003650 1.5e-25 119.4 93 52.7
ECA236G4699 Erigeron canadensis HOM05D001824 ORTHO05D003650 2.6e-25 118.6 89 56.2
Potri.013G115000 Populus trichocarpa HOM05D001824 ORTHO05D003650 3.4e-25 118.2 93 55.9
vmacro12501 Vaccinium macrocarpon HOM05D001824 ORTHO05D010055 2.2e-24 115.5 244 31.6
Aa31LG3G6730 Aethionema arabicum HOM05D001824 ORTHO05D003650 3.7e-24 114.8 93 57.0
BcaB08g35374 Brassica carinata HOM05D001824 ORTHO05D003650 4.9e-24 114.4 93 57.0
Sed0010683 Sechium edule HOM05D001824 ORTHO05D003650 4.9e-24 114.4 93 57.0
CSS0009746 Camellia sinensis var. sinensis HOM05D001824 ORTHO05D003650 1.1e-23 113.2 93 58.1
BcaC04g20841 Brassica carinata HOM05D001824 ORTHO05D003650 1.9e-23 112.5 93 55.9
A10p08620 Brassica napus HOM05D001824 ORTHO05D003650 1.9e-23 112.5 93 55.9
C09p38570 Brassica napus HOM05D001824 ORTHO05D003650 1.9e-23 112.5 93 55.9
BolC9t56714H Brassica oleracea HOM05D001824 ORTHO05D003650 1.9e-23 112.5 93 55.9
BraSC37t46144Z Brassica rapa HOM05D001824 ORTHO05D003650 1.9e-23 112.5 93 55.9
AL8G23910 Arabidopsis lyrata HOM05D001824 ORTHO05D003650 3.2e-23 111.7 93 55.9
Sp6g11600 Schrenkiella parvula HOM05D001824 ORTHO05D003650 4.1e-23 111.3 93 55.9
Carub.0008s0984 Capsella rubella HOM05D001824 ORTHO05D003650 5.4e-23 110.9 93 54.8
Thhalv10013194m.g Eutrema salsugineum HOM05D001824 ORTHO05D003650 1.6e-22 109.4 93 55.9
AT5G49950 Arabidopsis thaliana HOM05D001824 ORTHO05D003650 2.7e-22 108.6 93 53.8
CARHR258760 Cardamine hirsuta HOM05D001824 ORTHO05D003650 2.7e-22 108.6 93 53.8
SEGI_16244 Sequoiadendron giganteum HOM05D001824 ORTHO05D003650 3.5e-22 108.2 93 50.5
SMO116G0203 Selaginella moellendorffii HOM05D001824 ORTHO05D003650 6.0e-22 107.5 88 53.4
Mapoly0003s0130 Marchantia polymorpha HOM05D001824 ORTHO05D003650 5.1e-21 104.4 93 49.5
SGA_v2.0_scaffold118G32460 Striga asiatica HOM05D001824 ORTHO05D003650 7.3e-20 100.5 93 53.8
Pp3c26_11380 Physcomitrium patens HOM05D001824 ORTHO05D003650 1.6e-19 99.4 88 47.7
Pp3c11_8380 Physcomitrium patens HOM05D001824 ORTHO05D003650 3.6e-19 98.2 88 48.9
Ah.05g177800 Amaranthus hybridus HOM05D001824 ORTHO05D003650 1.5e-17 92.8 93 51.6
Prupe.1G030400 Prunus persica HOM05D001824 ORTHO05D003650 1.5e-17 92.8 56 66.1
CBR_g20172 Chara braunii HOM05D001824 ORTHO05D003650 5.4e-15 84.3 87 41.4
Sabra01G0169000 Salix brachista HOM05D001824 ORTHO05D003650 2.1e-14 82.4 89 48.3
Manes.18G099500 Manihot esculenta HOM05D001824 ORTHO05D003650 8.6e-13 77.0 93 41.9
MELO3C011823.2 Cucumis melo HOM05D001824 ORTHO05D003650 8.9e-10 67.0 93 41.9
ECA236G5130 Erigeron canadensis HOM05D001824 ORTHO05D003650 2.4e-07 58.9 45 51.1


User provided reference genes

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