Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 8.8e-75 283.5 139 100.0
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 5.3e-72 274.2 139 97.1
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.1e-27 127.1 140 45.0
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.9e-25 119.0 136 52.2
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.7e-25 118.6 138 45.7
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 3.7e-25 118.6 142 44.4
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 4.9e-25 118.2 140 45.0
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 1.4e-24 116.7 140 45.7
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 7.1e-24 114.4 141 41.1
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.5e-23 112.1 138 45.7
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.3e-22 110.2 138 45.7
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 2.8e-20 102.4 143 41.3
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 2.8e-20 102.4 138 42.0
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 6.2e-20 101.3 141 40.4
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 6.2e-20 101.3 141 40.4
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 6.2e-20 101.3 143 38.5
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 2.4e-19 99.4 140 38.6
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 3.1e-19 99.0 143 38.5
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 3.1e-19 99.0 140 40.0
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 4.0e-19 98.6 145 37.9
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 6.8e-19 97.8 140 37.9
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 6.8e-19 97.8 140 37.1
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 2.0e-18 96.3 151 43.0
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 9.9e-18 94.0 140 38.6
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 1.7e-17 93.2 141 36.9
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.9e-17 92.4 140 35.0
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 3.8e-17 92.0 140 38.6
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 6.4e-17 91.3 145 36.6
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 8.4e-17 90.9 140 38.6
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.1e-16 90.5 144 41.0
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 3.2e-16 89.0 144 40.3
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 1.6e-15 86.7 142 33.8
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 2.1e-15 86.3 140 37.9
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.1e-15 86.3 141 38.3
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 3.5e-15 85.5 171 32.7
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 4.6e-15 85.1 137 38.0
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 4.6e-15 85.1 138 37.0
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 6.0e-15 84.7 105 46.7
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 6.0e-15 84.7 139 30.2
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.3e-14 83.6 140 36.4
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.3e-14 83.6 142 35.9
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.7e-14 83.2 140 37.9
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.7e-14 83.2 151 39.1
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 2.3e-14 82.8 143 35.7
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 5.1e-14 81.6 140 31.4
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 6.6e-14 81.3 142 34.5
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 6.6e-14 81.3 140 35.7
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 6.6e-14 81.3 137 29.9
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 4.3e-13 78.6 142 34.5
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.3e-13 78.6 141 31.2
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.3e-13 78.6 141 31.2
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.3e-13 78.6 141 31.2
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 5.6e-13 78.2 140 34.3
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 5.6e-13 78.2 140 32.1
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 3.6e-12 75.5 139 34.5
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 4.8e-12 75.1 141 31.2
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 6.2e-12 74.7 146 34.2
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.4e-11 73.6 126 34.1
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 1.8e-11 73.2 141 34.0
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 6.9e-11 71.2 141 34.8
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 6.9e-11 71.2 147 29.9
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 6.9e-11 71.2 144 33.3
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 9.0e-11 70.9 140 32.9
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 1.2e-10 70.5 137 28.5
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.5e-10 70.1 141 33.3
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 2.0e-10 69.7 138 35.5
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 2.0e-10 69.7 89 42.7
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 2.0e-10 69.7 141 34.8
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 3.4e-10 68.9 141 29.1
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 7.6e-10 67.8 140 31.4
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 7.6e-10 67.8 140 30.0
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 7.6e-10 67.8 136 30.9
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 9.9e-10 67.4 138 34.8
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 9.9e-10 67.4 140 34.3
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 9.9e-10 67.4 105 37.1
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.3e-09 67.0 66 47.0
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.3e-09 67.0 132 37.1
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 2.2e-09 66.2 136 35.3
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 2.9e-09 65.9 142 30.3
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 2.9e-09 65.9 138 33.3
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 2.9e-09 65.9 86 36.0
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 3.8e-09 65.5 141 29.1
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 4.9e-09 65.1 146 32.2
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 6.4e-09 64.7 139 31.7
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 8.4e-09 64.3 135 33.3
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 4.2e-08 62.0 136 29.4
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 5.4e-08 61.6 142 31.7
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 5.4e-08 61.6 60 51.7
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 7.1e-08 61.2 138 30.4
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 2.1e-07 59.7 140 33.6
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 2.7e-07 59.3 140 28.6
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.5e-07 58.9 140 27.9
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 3.5e-07 58.9 43 55.8
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 4.6e-07 58.5 93 32.3
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 7.9e-07 57.8 139 28.1
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.0e-06 57.4 142 25.4
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 1.3e-06 57.0 145 31.0
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.7e-06 56.6 53 43.4
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.7e-06 56.6 129 30.2
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.3e-06 56.2 140 29.3
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 2.3e-06 56.2 113 26.5
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 3.0e-06 55.8 139 25.2
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 5.1e-06 55.1 142 23.9
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 8.7e-06 54.3 88 34.1
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 8.7e-06 54.3 127 31.5


User provided reference genes

Program Settings