Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 1.9e-60 235.7 128 100.0
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 8.7e-53 210.3 117 95.7
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 6.9e-42 174.1 115 80.0
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 2.0e-41 172.6 107 86.9
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 3.4e-41 171.8 116 81.9
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 4.5e-41 171.4 118 80.5
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 7.7e-41 170.6 118 78.8
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 7.7e-41 170.6 118 78.8
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.0e-40 170.2 116 78.4
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.0e-40 170.2 118 80.5
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 1.0e-40 170.2 118 79.7
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 1.7e-40 169.5 106 82.1
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 1.7e-40 169.5 124 75.0
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 1.7e-40 169.5 115 79.1
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.7e-40 169.5 115 79.1
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.2e-40 169.1 116 79.3
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 2.9e-40 168.7 120 77.5
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 3.8e-40 168.3 115 75.7
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 5.0e-40 167.9 119 76.5
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 5.0e-40 167.9 116 79.3
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 6.5e-40 167.5 104 85.6
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 6.5e-40 167.5 119 77.3
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 6.5e-40 167.5 118 78.0
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 6.5e-40 167.5 109 80.7
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 8.5e-40 167.2 117 76.1
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 8.5e-40 167.2 111 82.0
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 8.5e-40 167.2 115 78.3
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.4e-39 166.4 110 80.0
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 1.9e-39 166.0 113 79.6
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 1.9e-39 166.0 107 83.2
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 4.2e-39 164.9 121 74.4
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 4.2e-39 164.9 119 77.3
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 4.2e-39 164.9 118 76.3
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 5.5e-39 164.5 113 77.9
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 7.2e-39 164.1 117 75.2
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 7.2e-39 164.1 117 75.2
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 7.2e-39 164.1 124 71.8
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 7.2e-39 164.1 118 76.3
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 7.2e-39 164.1 100 89.0
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 9.4e-39 163.7 104 81.7
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 9.4e-39 163.7 117 77.8
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 9.4e-39 163.7 124 71.8
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 9.4e-39 163.7 115 73.9
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 9.4e-39 163.7 104 82.7
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 1.2e-38 163.3 113 77.0
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.2e-38 163.3 119 75.6
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.2e-38 163.3 119 75.6
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.2e-38 163.3 109 78.9
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.2e-38 163.3 109 78.9
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-38 162.9 117 76.9
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 1.6e-38 162.9 117 80.3
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 1.6e-38 162.9 118 78.0
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.6e-38 162.9 104 82.7
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 2.1e-38 162.5 104 80.8
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 2.1e-38 162.5 124 71.0
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.1e-38 162.5 117 74.4
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 2.1e-38 162.5 117 74.4
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 2.7e-38 162.2 113 77.9
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.7e-38 162.2 102 84.3
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 2.7e-38 162.2 117 76.1
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 3.6e-38 161.8 117 76.9
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 3.6e-38 161.8 117 76.9
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 3.6e-38 161.8 115 76.5
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 4.6e-38 161.4 116 77.6
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 4.6e-38 161.4 111 76.6
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 6.1e-38 161.0 113 75.2
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 7.9e-38 160.6 117 75.2
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 7.9e-38 160.6 117 76.1
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 7.9e-38 160.6 117 76.1
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 7.9e-38 160.6 117 76.1
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 7.9e-38 160.6 109 78.0
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 7.9e-38 160.6 106 78.3
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 7.9e-38 160.6 112 78.6
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 1.0e-37 160.2 115 74.8
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 1.4e-37 159.8 117 74.4
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 1.4e-37 159.8 100 85.0
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 1.4e-37 159.8 123 72.4
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 1.8e-37 159.5 124 71.8
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 1.8e-37 159.5 117 75.2
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 1.8e-37 159.5 117 75.2
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 2.3e-37 159.1 112 77.7
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 2.3e-37 159.1 115 76.5
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 3.0e-37 158.7 117 74.4
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 3.0e-37 158.7 112 77.7
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 3.9e-37 158.3 117 74.4
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 3.9e-37 158.3 115 76.5
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 3.9e-37 158.3 117 74.4
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 6.7e-37 157.5 112 76.8
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 6.7e-37 157.5 103 77.7
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 6.7e-37 157.5 103 77.7
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 1.1e-36 156.8 103 80.6
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 1.1e-36 156.8 117 72.6
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.5e-36 156.4 97 85.6
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.0e-36 156.0 114 75.4
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.5e-36 155.6 116 74.1
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.3e-36 154.8 127 70.9
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 4.3e-36 154.8 113 74.3
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.4e-36 154.1 127 70.1
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 2.2e-35 152.5 117 73.5
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 2.8e-35 152.1 116 70.7
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 3.7e-35 151.8 115 71.3
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 6.3e-35 151.0 104 75.0
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 1.8e-34 149.4 104 76.0
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 3.1e-34 148.7 115 67.8
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 4.1e-34 148.3 108 75.9
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 7.7e-33 144.1 102 75.5
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 5.0e-32 141.4 117 64.1
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 6.5e-32 141.0 153 58.8
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 1.2e-30 136.7 99 68.7
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 3.6e-30 135.2 103 68.9
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 4.7e-30 134.8 119 64.7
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 6.1e-30 134.4 110 68.2
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 2.3e-29 132.5 100 68.0
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 3.0e-29 132.1 100 68.0
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 5.1e-29 131.3 108 65.7
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 6.7e-29 131.0 101 65.3
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.6e-28 129.0 108 66.7
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 7.4e-28 127.5 97 73.2
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 9.7e-28 127.1 116 57.8
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.3e-27 126.7 97 74.2
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 2.8e-27 125.6 100 71.0
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 6.3e-27 124.4 126 58.7
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 1.5e-25 119.8 75 81.3
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 7.7e-25 117.5 98 57.1
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 3.8e-24 115.2 85 72.9
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 4.1e-18 95.1 76 63.2
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.3e-18 94.7 97 53.6
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 2.6e-17 92.4 97 52.6
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 2.6e-17 92.4 103 50.5
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 3.5e-17 92.0 106 55.7
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 4.5e-17 91.7 95 47.4
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.7e-17 90.9 95 52.6
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.3e-16 90.1 86 54.7
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.9e-16 89.0 95 51.6
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 8.5e-16 87.4 54 85.2
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.5e-15 85.9 60 75.0
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 1.4e-13 80.1 56 75.0
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.8e-11 72.4 54 61.1
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.3e-11 71.2 49 73.5
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 2.9e-08 62.4 97 39.2
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 3.2e-07 58.9 38 76.3
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.2e-06 57.0 45 66.7
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.2e-06 57.0 76 50.0


User provided reference genes

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