Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 1.1e-133 479.9 239 100.0
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 1.3e-62 243.8 237 61.2
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 9.5e-61 237.7 235 58.7
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 1.1e-59 234.2 238 57.6
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 4.0e-59 232.3 232 58.2
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 8.9e-59 231.1 232 57.8
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 2.0e-58 229.9 237 57.8
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 2.0e-58 229.9 238 58.0
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 5.8e-58 228.4 236 56.4
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 1.7e-57 226.9 237 55.7
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 3.7e-57 225.7 238 56.7
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 4.9e-57 225.3 238 56.3
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 4.9e-57 225.3 238 54.6
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 6.4e-57 224.9 238 56.7
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 1.1e-56 224.2 237 57.4
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 1.1e-56 224.2 231 56.3
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 1.9e-56 223.4 238 56.7
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 2.4e-56 223.0 238 55.5
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 2.4e-56 223.0 238 55.9
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.4e-56 223.0 238 55.9
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.4e-56 223.0 238 55.9
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 2.4e-56 223.0 238 56.3
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 2.4e-56 223.0 238 56.3
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 3.2e-56 222.6 238 54.6
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 3.2e-56 222.6 238 54.6
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 4.1e-56 222.2 238 55.9
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 4.1e-56 222.2 238 54.6
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 5.4e-56 221.9 238 55.9
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 7.1e-56 221.5 238 55.5
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 7.1e-56 221.5 232 54.3
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 7.1e-56 221.5 247 54.3
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 9.2e-56 221.1 238 55.9
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 1.2e-55 220.7 238 55.5
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 1.6e-55 220.3 232 53.9
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 1.6e-55 220.3 238 55.5
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 1.6e-55 220.3 238 55.5
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 2.1e-55 219.9 232 54.3
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 2.1e-55 219.9 238 55.9
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.1e-55 219.9 238 53.8
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 2.7e-55 219.5 238 53.4
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 2.7e-55 219.5 238 53.8
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 3.5e-55 219.2 236 55.5
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 3.5e-55 219.2 264 51.1
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 4.6e-55 218.8 238 54.2
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 6.0e-55 218.4 238 55.0
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 6.0e-55 218.4 232 53.4
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 6.0e-55 218.4 238 54.2
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 6.0e-55 218.4 238 55.5
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 7.8e-55 218.0 232 53.9
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 7.8e-55 218.0 238 54.6
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 7.8e-55 218.0 238 53.8
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 7.8e-55 218.0 238 53.8
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 7.8e-55 218.0 236 55.5
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.0e-54 217.6 251 51.8
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.0e-54 217.6 238 53.8
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 1.0e-54 217.6 232 53.0
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 1.0e-54 217.6 232 52.6
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 1.7e-54 216.9 254 50.4
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 2.3e-54 216.5 282 49.3
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 5.1e-54 215.3 238 55.0
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 5.1e-54 215.3 241 52.7
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 6.6e-54 214.9 232 55.2
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 8.6e-54 214.5 238 52.9
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 1.5e-53 213.8 238 52.1
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 1.5e-53 213.8 238 52.1
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 1.9e-53 213.4 235 53.6
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 1.9e-53 213.4 238 53.4
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 2.5e-53 213.0 286 45.1
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 3.3e-53 212.6 240 51.7
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 7.3e-53 211.5 232 53.0
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 7.3e-53 211.5 232 53.0
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 7.3e-53 211.5 239 52.7
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 9.5e-53 211.1 213 54.9
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 9.5e-53 211.1 237 53.2
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 9.5e-53 211.1 234 53.0
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 1.2e-52 210.7 238 53.4
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 1.6e-52 210.3 217 55.3
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 2.8e-52 209.5 238 52.5
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 8.1e-52 208.0 237 51.5
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 8.1e-52 208.0 239 51.9
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 8.1e-52 208.0 232 51.3
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 2.4e-51 206.5 238 50.8
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 2.4e-51 206.5 239 53.1
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 5.2e-51 205.3 232 50.4
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 5.2e-51 205.3 232 50.4
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 6.8e-51 204.9 232 50.0
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 6.8e-51 204.9 232 50.0
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 6.8e-51 204.9 238 50.4
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 6.8e-51 204.9 232 50.4
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 8.9e-51 204.5 232 50.0
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 1.2e-50 204.1 232 50.0
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 1.2e-50 204.1 232 50.0
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.5e-50 203.8 236 50.8
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 1.5e-50 203.8 232 51.7
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 2.6e-50 203.0 226 50.4
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 2.6e-50 203.0 226 50.4
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 2.6e-50 203.0 226 50.4
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 3.4e-50 202.6 252 49.6
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 1.3e-49 200.7 245 49.8
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 1.7e-49 200.3 238 50.0
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 2.9e-49 199.5 243 47.3
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 2.9e-49 199.5 243 47.3
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.1e-48 197.6 232 50.0
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 2.7e-47 193.0 226 49.6
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 4.6e-47 192.2 254 47.6
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.9e-45 186.8 225 52.0
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 4.3e-45 185.7 252 44.8
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 7.3e-45 184.9 221 52.5
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 1.6e-44 183.7 343 38.8
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 4.0e-43 179.1 233 46.4
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 9.0e-43 177.9 213 53.1
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 2.9e-41 172.9 238 46.2
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 4.3e-37 159.1 170 54.7
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 3.1e-35 152.9 217 46.1
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 9.0e-35 151.4 171 49.1
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 5.8e-34 148.7 228 40.8
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 4.9e-33 145.6 171 49.7
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 6.0e-31 138.7 280 37.1
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 1.3e-30 137.5 212 41.5
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 3.3e-29 132.9 95 72.6
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 3.1e-27 126.3 241 36.9
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 1.5e-26 124.0 101 67.3
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 4.5e-26 122.5 78 78.2
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 5.8e-26 122.1 196 44.9
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 5.8e-26 122.1 153 45.8
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 2.4e-24 116.7 101 59.4
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 3.0e-22 109.8 90 64.4
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 8.7e-22 108.2 173 39.9
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 1.1e-21 107.8 300 30.7
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 1.9e-16 90.5 90 48.9
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 5.5e-16 89.0 84 60.7
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.3e-14 84.3 78 61.5
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 4.3e-13 79.3 62 66.1
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.3e-12 77.8 42 81.0
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 8.2e-12 75.1 262 27.9
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 7.7e-10 68.6 261 25.7
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 8.5e-09 65.1 73 42.5
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 1.9e-08 63.9 45 60.0


User provided reference genes

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