Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A239T53 Lonicera japonica HOM05D000136 ORTHO05D234806 7.2e-68 260.4 125 100.0
Migut.A00099 Erythranthe guttata HOM05D000136 ORTHO05D000080 4.0e-10 68.6 58 56.9
FAN15G3427 Fragaria x ananassa HOM05D000136 ORTHO05D000080 4.9e-08 61.6 57 52.6
vmacro01411 Vaccinium macrocarpon HOM05D000136 ORTHO05D000080 4.9e-08 61.6 50 54.0
Aqoxy7G01114 Aquilegia oxysepala HOM05D000136 ORTHO05D000080 8.3e-08 60.8 49 55.1
RcHm_v2.0_Chr6g0311471 Rosa chinensis HOM05D000136 ORTHO05D000080 1.4e-07 60.1 52 51.9
Dinv41828 Davidia involucrata HOM05D000136 ORTHO05D000080 1.9e-07 59.7 51 52.9
Phvul.009G080200 Phaseolus vulgaris HOM05D000136 ORTHO05D000080 2.4e-07 59.3 50 54.0
Lj7C239T6 Lonicera japonica HOM05D000136 ORTHO05D000080 3.2e-07 58.9 50 52.0
Lj7C245T5 Lonicera japonica HOM05D000136 ORTHO05D000080 3.2e-07 58.9 50 52.0
Os01g0184100 Oryza sativa ssp. japonica HOM05D000136 ORTHO05D000080 3.2e-07 58.9 49 55.1
unitig_748.g8241 Utricularia gibba HOM05D000136 ORTHO05D000080 3.2e-07 58.9 49 51.0
VMungo1309G2119 Vigna mungo HOM05D000136 ORTHO05D000080 3.2e-07 58.9 50 52.0
Aqoxy7G01119 Aquilegia oxysepala HOM05D000136 ORTHO05D000080 4.1e-07 58.5 49 53.1
GSVIVG01035433001 Vitis vinifera HOM05D000136 ORTHO05D000080 4.1e-07 58.5 49 53.1
Lj7C245T6 Lonicera japonica HOM05D000136 ORTHO05D000080 5.4e-07 58.2 49 51.0
TAR628G0350 Trochodendron aralioides HOM05D000136 ORTHO05D000080 5.4e-07 58.2 50 52.0
Atru.chr7.1902 Acer truncatum HOM05D000136 ORTHO05D000080 7.1e-07 57.8 49 55.1
FvH4_2g31370 Fragaria vesca HOM05D000136 ORTHO05D000080 7.1e-07 57.8 60 51.7
MBI06_g02571_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 7.1e-07 57.8 49 53.1
Zm00001eb121900 Zea mays HOM05D000136 ORTHO05D000080 7.1e-07 57.8 49 55.1
FAN24G1095 Fragaria x ananassa HOM05D000136 ORTHO05D000080 9.2e-07 57.4 52 53.8
Zm00001eb337690 Zea mays HOM05D000136 ORTHO05D000080 9.2e-07 57.4 49 55.1
FAN20G2807 Fragaria x ananassa HOM05D000136 ORTHO05D000080 1.2e-06 57.0 60 51.7
HanXRQChr03g0072441 Helianthus annuus HOM05D000136 ORTHO05D000080 1.2e-06 57.0 49 53.1
HanXRQChr03g0072461 Helianthus annuus HOM05D000136 ORTHO05D000080 1.2e-06 57.0 68 41.2
HanXRQChr03g0072471 Helianthus annuus HOM05D000136 ORTHO05D000080 1.2e-06 57.0 68 41.2
Hma1.2p1_0196F.1_g085040 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 1.2e-06 57.0 49 51.0
Hma1.2p1_2284F.1_g318910 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 1.2e-06 57.0 49 51.0
Lj7C239T7 Lonicera japonica HOM05D000136 ORTHO05D000080 1.2e-06 57.0 49 51.0
SGA_v2.0_scaffold64G21856 Striga asiatica HOM05D000136 ORTHO05D000080 1.2e-06 57.0 49 53.1
unitig_32.g10908 Utricularia gibba HOM05D000136 ORTHO05D000080 1.2e-06 57.0 49 51.0
GSVIVG01035429001 Vitis vinifera HOM05D000136 ORTHO05D000080 1.2e-06 57.0 49 51.0
GSVIVG01035434001 Vitis vinifera HOM05D000136 ORTHO05D000080 1.2e-06 57.0 49 51.0
Zm00001eb395330 Zea mays HOM05D000136 ORTHO05D000080 1.2e-06 57.0 49 53.1
Zm00001eb395360 Zea mays HOM05D000136 ORTHO05D000080 1.2e-06 57.0 49 53.1
Zm00001eb395370 Zea mays HOM05D000136 ORTHO05D000080 1.2e-06 57.0 49 53.1
CANSAT21G0693 Cannabis sativa HOM05D000136 ORTHO05D000080 1.6e-06 56.6 49 51.0
Cpa.g.sc126.51 Carica papaya HOM05D000136 ORTHO05D000080 1.6e-06 56.6 49 51.0
MD08G1068500 Malus domestica HOM05D000136 ORTHO05D000080 1.6e-06 56.6 52 46.2
MD08G1068700 Malus domestica HOM05D000136 ORTHO05D000080 1.6e-06 56.6 51 49.0
Peaxi162Scf00565g00812 Petunia axillaris HOM05D000136 ORTHO05D000080 1.6e-06 56.6 54 50.0
SGA_v2.0_scaffold20G09182 Striga asiatica HOM05D000136 ORTHO05D000080 1.6e-06 56.6 49 51.0
Thecc.09G059500 Theobroma cacao HOM05D000136 ORTHO05D000080 1.6e-06 56.6 49 55.1
TAR624G1204 Trochodendron aralioides HOM05D000136 ORTHO05D000080 1.6e-06 56.6 49 51.0
vmacro01412 Vaccinium macrocarpon HOM05D000136 ORTHO05D000080 1.6e-06 56.6 47 53.2
COL.COLO4_21109 Corchorus olitorius HOM05D000136 ORTHO05D000080 2.1e-06 56.2 49 51.0
MBI05_g23632_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 2.1e-06 56.2 49 49.0
Migut.A00100 Erythranthe guttata HOM05D000136 ORTHO05D000080 2.7e-06 55.8 49 49.0
Lsat_1_v5_gn_7_61041 Lactuca sativa HOM05D000136 ORTHO05D000080 2.7e-06 55.8 49 51.0
Nitab4.5_0000738g0040 Nicotiana tabacum HOM05D000136 ORTHO05D000080 2.7e-06 55.8 49 51.0
SalBow4G1517 Salvia bowleyana HOM05D000136 ORTHO05D000080 2.7e-06 55.8 49 49.0
TAR628G0129 Trochodendron aralioides HOM05D000136 ORTHO05D000080 2.7e-06 55.8 50 50.0
Ah.10g034030 Amaranthus hybridus HOM05D000136 ORTHO05D000080 3.5e-06 55.5 49 51.0
MSTRG.14069 Avicennia marina HOM05D000136 ORTHO05D000080 3.5e-06 55.5 49 49.0
CDE12G0467 Ceratophyllum demersum HOM05D000136 ORTHO05D000080 3.5e-06 55.5 50 50.0
Ca_15844_v3 Cicer arietinum L. HOM05D000136 ORTHO05D000080 3.5e-06 55.5 49 49.0
Gohir.D05G041400 Gossypium hirsutum HOM05D000136 ORTHO05D000080 3.5e-06 55.5 49 53.1
Hma1.2p1_0196F.1_g084960 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 3.5e-06 55.5 49 49.0
Hma1.2p1_0196F.1_g084980 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 3.5e-06 55.5 49 49.0
Lalb_Chr23g0267941 Lupinus albus HOM05D000136 ORTHO05D000080 3.5e-06 55.5 49 51.0
Nn6g35570 Nelumbo nucifera HOM05D000136 ORTHO05D000080 3.5e-06 55.5 49 49.0
QL02p000387 Quercus lobata HOM05D000136 ORTHO05D000080 3.5e-06 55.5 49 49.0
Rhsim05G0073400 Rhododendron simsii HOM05D000136 ORTHO05D000080 3.5e-06 55.5 50 50.0
Sabra06G0173100 Salix brachista HOM05D000136 ORTHO05D000080 3.5e-06 55.5 49 49.0
Sabra07G0031000 Salix brachista HOM05D000136 ORTHO05D000080 3.5e-06 55.5 49 53.1
Solyc08g062437.1 Solanum lycopersicum HOM05D000136 ORTHO05D000080 3.5e-06 55.5 49 51.0
Sopen08g017960 Solanum pennellii HOM05D000136 ORTHO05D000080 3.5e-06 55.5 49 51.0
PGSC0003DMG400008187 Solanum tuberosum HOM05D000136 ORTHO05D000080 3.5e-06 55.5 49 51.0
Atru.chr7.1909 Acer truncatum HOM05D000136 ORTHO05D000080 4.6e-06 55.1 49 49.0
CAN.G338.51 Capsicum annuum HOM05D000136 ORTHO05D000080 4.6e-06 55.1 49 51.0
AUR62009102 Chenopodium quinoa HOM05D000136 ORTHO05D000080 4.6e-06 55.1 49 51.0
AUR62020570 Chenopodium quinoa HOM05D000136 ORTHO05D000080 4.6e-06 55.1 49 51.0
Duzib187G0028 Durio zibethinus HOM05D000136 ORTHO05D000080 4.6e-06 55.1 49 51.0
Eucgr.C00678 Eucalyptus grandis HOM05D000136 ORTHO05D000080 4.6e-06 55.1 49 51.0
Eucgr.L02860 Eucalyptus grandis HOM05D000136 ORTHO05D000080 4.6e-06 55.1 49 51.0
Nitab4.5_0000286g0060 Nicotiana tabacum HOM05D000136 ORTHO05D000080 4.6e-06 55.1 49 49.0
Phvul.001G039800 Phaseolus vulgaris HOM05D000136 ORTHO05D000080 4.6e-06 55.1 49 51.0
PGR031G3486 Punica granatum HOM05D000136 ORTHO05D000080 4.6e-06 55.1 50 50.0
PGR031G3612 Punica granatum HOM05D000136 ORTHO05D000080 4.6e-06 55.1 49 51.0
Sabra07G0030900 Salix brachista HOM05D000136 ORTHO05D000080 4.6e-06 55.1 49 51.0
TWI63G0922 Tripterygium wilfordii HOM05D000136 ORTHO05D000080 4.6e-06 55.1 49 53.1
Aqoxy4G02523 Aquilegia oxysepala HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 46.9
A10p25740 Brassica napus HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
C09p64820 Brassica napus HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
BolC9t59313H Brassica oleracea HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
BraA10t44640Z Brassica rapa HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
Cfa018000 Carpinus fangiana HOM05D000136 ORTHO05D000080 6.0e-06 54.7 50 48.0
CiPaw.15G088000 Carya illinoinensis HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
CiPaw.15G088100 Carya illinoinensis HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
CiPaw.15G088200 Carya illinoinensis HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
CiPaw.15G088300 Carya illinoinensis HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
CiPaw.15G088500 Carya illinoinensis HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
Migut.E01578 Erythranthe guttata HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 46.9
Glyma.14G099900 Glycine max HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
Hma1.2p1_0196F.1_g085030 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
Lsat_1_v5_gn_7_60201 Lactuca sativa HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
Lsat_1_v5_gn_7_61001 Lactuca sativa HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
Lsat_1_v5_gn_7_61081 Lactuca sativa HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
MBI10_g17800_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 51.0
MD08G1068000 Malus domestica HOM05D000136 ORTHO05D000080 6.0e-06 54.7 50 48.0
MD15G1053800 Malus domestica HOM05D000136 ORTHO05D000080 6.0e-06 54.7 50 48.0
Manes.03G051600 Manihot esculenta HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 51.0
Manes.16G083600 Manihot esculenta HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
Nitab4.5_0000286g0070 Nicotiana tabacum HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
Nitab4.5_0003244g0020 Nicotiana tabacum HOM05D000136 ORTHO05D000080 6.0e-06 54.7 51 49.0
Potri.006G223900 Populus trichocarpa HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
Sc06g0001070 Simmondsia chinensis HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
TWI32G0452 Tripterygium wilfordii HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
TWI34G1479 Tripterygium wilfordii HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
TWI63G1578 Tripterygium wilfordii HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
TAR624G0976 Trochodendron aralioides HOM05D000136 ORTHO05D000080 6.0e-06 54.7 49 49.0
GSVIVG01035430001 Vitis vinifera HOM05D000136 ORTHO05D000080 6.0e-06 54.7 54 46.3
COL.COLO4_21111 Corchorus olitorius HOM05D000136 ORTHO05D000080 7.8e-06 54.3 49 51.0
Dinv27031 Davidia involucrata HOM05D000118 ORTHO05D000080 7.8e-06 54.3 48 47.9
Glyma.04G054400 Glycine max HOM05D000136 ORTHO05D000080 7.8e-06 54.3 49 46.9
Gohir.D05G041500 Gossypium hirsutum HOM05D000136 ORTHO05D000080 7.8e-06 54.3 49 49.0
Gorai.009G042000 Gossypium raimondii HOM05D000136 ORTHO05D000080 7.8e-06 54.3 49 51.0
Gorai.009G042100 Gossypium raimondii HOM05D000136 ORTHO05D000080 7.8e-06 54.3 49 49.0
Hma1.2p1_0196F.1_g085000 Hydrangea macrophylla HOM05D000136 ORTHO05D000080 7.8e-06 54.3 49 49.0
Psat6g021840 Pisum sativum HOM05D000136 ORTHO05D000080 7.8e-06 54.3 49 51.0
Sed0012346 Sechium edule HOM05D000136 ORTHO05D000080 7.8e-06 54.3 49 46.9
PGSC0003DMG400021737 Solanum tuberosum HOM05D000136 ORTHO05D000080 7.8e-06 54.3 49 49.0
TPR.G3526 Trifolium pratense HOM05D000136 ORTHO05D000080 7.8e-06 54.3 49 49.0
TAR636G1216 Trochodendron aralioides HOM05D000136 ORTHO05D000080 7.8e-06 54.3 50 48.0


User provided reference genes

Program Settings