Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 1.7e-249 865.5 447 100.0
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 8.2e-223 776.9 435 89.2
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 1.4e-222 776.2 433 89.1
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 3.1e-222 775.0 433 90.3
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 3.1e-222 775.0 436 88.3
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 5.3e-222 774.2 438 87.7
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 2.0e-221 772.3 438 89.7
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 2.6e-221 771.9 438 87.9
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.8e-221 770.8 437 88.8
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 2.2e-220 768.8 433 89.4
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 8.4e-220 766.9 435 87.6
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 8.4e-220 766.9 440 87.0
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 2.5e-219 765.4 440 87.0
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 5.5e-219 764.2 440 86.4
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 7.1e-219 763.8 435 88.3
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.6e-218 762.7 433 88.7
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 2.1e-218 762.3 433 88.5
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 2.7e-218 761.9 440 86.8
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.5e-218 761.5 427 89.5
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 6.0e-218 760.8 435 87.8
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 7.9e-218 760.4 437 87.4
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 1.0e-217 760.0 437 87.4
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 2.3e-217 758.8 437 87.2
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 3.9e-217 758.1 436 87.6
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 6.7e-217 757.3 440 86.1
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 6.7e-217 757.3 431 87.9
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 6.7e-217 757.3 439 86.8
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 1.1e-216 756.5 441 86.6
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 1.9e-216 755.7 431 87.7
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 2.5e-216 755.4 435 86.0
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 2.5e-216 755.4 437 86.5
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 3.3e-216 755.0 431 87.7
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.3e-216 755.0 437 87.6
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 3.3e-216 755.0 437 86.3
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 4.3e-216 754.6 437 86.5
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 7.4e-216 753.8 441 85.7
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 7.4e-216 753.8 437 86.5
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 7.4e-216 753.8 436 86.7
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 9.7e-216 753.4 439 86.3
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 1.3e-215 753.1 437 86.0
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.3e-215 753.1 437 87.2
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 2.8e-215 751.9 438 84.9
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 3.7e-215 751.5 431 86.8
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 8.2e-215 750.4 431 87.2
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 1.8e-214 749.2 433 86.8
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 4.1e-214 748.0 437 85.1
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 5.3e-214 747.7 439 85.6
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 6.9e-214 747.3 435 85.7
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 2.0e-213 745.7 438 84.5
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 2.0e-213 745.7 442 83.7
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 5.9e-213 744.2 437 85.4
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 7.6e-213 743.8 437 85.1
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 1.0e-212 743.4 429 86.5
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 1.7e-212 742.7 438 84.9
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.7e-212 742.7 439 83.8
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 2.2e-212 742.3 437 84.2
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 6.5e-212 740.7 431 86.3
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 8.5e-212 740.3 435 84.4
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 8.5e-212 740.3 435 84.4
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 1.4e-211 739.6 445 83.4
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 1.9e-211 739.2 435 84.4
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 1.9e-211 739.2 435 84.4
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 3.2e-211 738.4 441 84.6
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 4.2e-211 738.0 439 83.4
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 4.2e-211 738.0 439 84.5
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 5.5e-211 737.6 435 84.1
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 7.2e-211 737.3 446 81.8
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 9.4e-211 736.9 446 81.8
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 9.4e-211 736.9 437 85.1
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 9.4e-211 736.9 439 83.6
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 2.1e-210 735.7 440 83.0
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 2.7e-210 735.3 435 83.9
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 6.1e-210 734.2 436 83.3
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 7.9e-210 733.8 438 83.1
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 1.0e-209 733.4 447 82.8
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.4e-209 733.0 439 83.1
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 1.8e-209 732.6 439 82.9
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 2.3e-209 732.3 440 82.3
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 2.3e-209 732.3 440 82.3
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 2.3e-209 732.3 435 83.4
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 3.0e-209 731.9 443 83.5
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 5.1e-209 731.1 439 83.1
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 1.1e-208 729.9 438 84.0
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.5e-208 729.6 445 82.2
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 1.9e-208 729.2 443 82.2
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 1.9e-208 729.2 431 82.8
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 5.7e-208 727.6 440 81.8
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 7.4e-208 727.2 438 82.9
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 9.7e-208 726.9 431 82.6
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 9.7e-208 726.9 429 84.8
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 2.2e-207 725.7 441 82.8
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 4.8e-207 724.5 432 83.8
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 1.1e-206 723.4 436 82.1
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 1.8e-206 722.6 432 83.6
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 1.8e-206 722.6 438 82.9
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 3.1e-206 721.8 438 82.9
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 3.1e-206 721.8 445 83.4
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 9.1e-206 720.3 436 82.1
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 9.1e-206 720.3 437 82.8
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 1.2e-205 719.9 431 83.1
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.0e-205 719.2 435 83.4
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 2.0e-205 719.2 450 80.7
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 5.9e-205 717.6 458 80.1
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 2.5e-203 712.2 430 82.1
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 4.2e-203 711.4 430 82.1
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 7.9e-202 707.2 430 81.6
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 7.9e-202 707.2 433 83.4
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.3e-201 705.7 437 82.2
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.4e-200 701.4 437 81.5
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 2.2e-199 699.1 442 79.0
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 2.2e-199 699.1 454 78.4
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 2.8e-199 698.7 435 82.1
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.4e-198 695.7 437 81.2
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 2.2e-196 689.1 433 78.1
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 7.2e-195 684.1 409 83.1
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.7e-194 682.2 382 88.5
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 1.0e-185 653.7 431 77.5
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 9.1e-182 640.6 433 72.5
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 1.9e-179 632.9 436 73.4
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 3.2e-179 632.1 434 73.0
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 2.8e-175 619.0 427 73.1
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 3.7e-175 618.6 469 68.4
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 4.0e-169 598.6 443 67.3
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 4.9e-167 591.7 353 82.7
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 7.0e-166 587.8 427 69.1
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 2.9e-164 582.4 476 67.2
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 8.0e-162 574.3 439 66.5
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.9e-155 553.1 318 88.4
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 6.2e-154 548.1 428 66.8
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 4.9e-151 538.5 315 86.3
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 2.2e-119 433.3 273 82.1
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 9.6e-115 417.9 258 82.2
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 4.8e-114 415.6 330 66.7
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 6.2e-114 415.2 438 50.5
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 6.9e-113 411.8 231 86.6
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 1.2e-112 411.0 258 80.6
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 3.0e-108 396.4 258 77.9
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 6.9e-97 358.6 207 88.9
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 5.1e-92 342.4 201 87.1
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 2.5e-91 340.1 397 54.2
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 8.5e-87 325.1 174 90.8
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 3.3e-83 313.2 174 86.2
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 1.4e-73 281.2 222 69.4
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 2.9e-71 273.5 182 78.6
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 7.2e-70 268.9 433 40.6
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 9.1e-65 251.9 215 62.3
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 1.0e-63 248.4 215 62.3
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 2.2e-63 247.3 289 47.1
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 1.1e-62 245.0 215 60.9
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 1.0e-60 238.4 237 56.5
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 3.1e-57 226.9 124 88.7
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 9.1e-57 225.3 213 56.8
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 9.8e-51 205.3 116 87.1
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 8.9e-44 182.2 188 57.4
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 8.6e-39 165.6 87 92.0
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 1.4e-36 158.3 83 91.6
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 2.9e-34 150.6 162 52.5
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 1.2e-27 128.6 142 54.2
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 1.3e-26 125.2 127 47.2
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 9.2e-25 119.0 83 68.7
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 6.6e-23 112.8 67 83.6
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 4.7e-21 106.7 204 38.7
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 8.1e-21 105.9 125 51.2
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 5.8e-19 99.8 56 89.3
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 4.2e-17 93.6 74 64.9
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 1.6e-16 91.7 57 78.9
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 3.0e-15 87.4 66 68.2
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 1.1e-14 85.5 208 33.7
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 2.4e-12 77.8 48 81.2
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 4.0e-12 77.0 43 86.0
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 1.5e-11 75.1 69 62.3
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 3.4e-11 73.9 46 78.3
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 3.8e-10 70.5 69 60.9
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 1.4e-09 68.6 37 91.9
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 2.3e-07 61.2 66 56.1
arahy.Tifrunner.gnm1.ann1.E8SK3Y Arachis hypogaea HOM05D004109 ORTHO05D084058 3.0e-07 60.8 35 82.9
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 5.6e-06 56.6 50 64.0
Lsat_1_v5_gn_3_28400 Lactuca sativa HOM05D001423 ORTHO05D048396 7.3e-06 56.2 71 46.5
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 7.3e-06 56.2 31 80.6


User provided reference genes

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