Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 0.0e+00 2728.7 1406 100.0
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 1489.6 1390 59.4
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 1285.4 1437 51.4
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 1255.7 1534 48.0
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 1255.0 1397 50.5
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 1181.4 1406 49.1
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 1177.5 1396 48.4
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 1153.7 1406 47.7
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 1147.1 1413 46.9
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 1144.4 1411 48.3
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 1134.0 1398 46.9
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 1127.5 1429 46.9
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 1120.5 1414 46.8
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 1109.0 1385 46.5
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 1100.1 1392 48.0
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 1096.3 1442 45.7
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 1083.9 1392 46.8
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 1082.4 1399 45.9
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 1082.4 1388 47.5
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 1077.8 1274 49.5
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 9.6e-312 1074.7 1402 45.7
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 9.6e-312 1073.9 1392 46.3
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 9.6e-312 1073.5 1413 45.0
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 2.9e-311 1072.4 1399 45.5
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 1.9e-310 1069.7 1399 45.5
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 1.9e-310 1069.7 1483 44.2
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 4.7e-309 1065.1 1407 45.8
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 4.9e-306 1055.0 1439 44.8
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 8.3e-306 1054.3 1397 44.5
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 7.0e-305 1051.2 1446 44.8
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 9.2e-305 1050.8 1446 44.9
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 1.1e-302 1043.9 1421 44.2
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 5.4e-297 1025.0 1397 45.2
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 3.3e-294 1015.8 1415 44.5
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 1.1e-292 1010.7 1391 45.3
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 4.0e-292 1008.8 1412 43.7
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 1.2e-291 1007.3 1409 43.9
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 2.6e-291 1006.1 1395 44.0
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 4.4e-291 1005.4 1403 44.3
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 1.7e-290 1003.4 1408 43.6
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 8.4e-290 1001.1 1404 44.4
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 1.5e-286 990.3 1420 43.2
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 1.7e-282 976.9 1406 43.9
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.1e-281 974.2 1485 42.0
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 9.3e-281 971.1 1401 42.8
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 1.6e-280 970.3 1406 42.9
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 4.6e-280 968.8 1401 42.7
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 1.7e-279 966.8 1363 44.2
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 9.3e-273 944.5 1417 41.5
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 6.0e-272 941.8 1396 42.5
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 1.8e-268 930.2 1402 41.5
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 2.1e-264 916.8 1400 39.9
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 4.6e-264 915.6 1408 41.9
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 1.9e-262 910.2 1426 40.0
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 3.3e-262 909.4 1402 42.2
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 1.9e-257 893.6 1405 41.7
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 2.1e-256 890.2 1390 40.4
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 1.8e-255 887.1 2050 33.0
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 8.7e-255 884.8 1400 39.0
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 1.3e-253 880.9 1408 40.6
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 2.2e-253 880.2 1400 41.4
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 3.4e-251 872.8 1391 39.0
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 1.7e-250 870.5 1402 39.2
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 2.2e-250 870.2 1430 39.5
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 2.5e-249 866.7 1401 38.5
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 2.0e-246 857.1 1422 38.4
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 2.5e-246 856.7 1399 38.6
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 2.5e-246 856.7 1399 38.6
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 2.4e-244 850.1 1276 40.6
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 6.9e-244 848.6 1400 38.4
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 6.9e-244 848.6 1400 38.4
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 1.6e-240 837.4 823 54.4
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 6.5e-234 815.5 758 56.1
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 6.1e-232 808.9 1413 39.4
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 1.1e-228 798.1 1422 36.8
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 7.0e-220 768.8 1439 36.6
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 1.7e-218 764.2 1434 36.1
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 2.9e-210 736.9 702 55.3
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.2e-200 704.9 682 55.3
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 3.0e-194 683.7 946 44.4
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 7.0e-188 662.5 1007 41.4
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 8.9e-183 645.6 994 39.9
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 4.4e-182 643.3 1437 32.3
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 4.9e-181 639.8 1515 33.5
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 5.1e-178 629.8 998 39.8
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 1.9e-156 558.1 947 38.0
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 4.6e-155 553.5 714 45.7
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 9.6e-145 519.2 1268 32.1
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 1.1e-140 505.8 986 34.3
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 7.2e-132 476.5 377 64.7
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 2.5e-124 451.4 771 38.1
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 7.9e-123 446.4 487 51.7
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 5.7e-121 440.3 384 60.2
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 3.0e-114 417.9 330 63.9
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 8.2e-112 409.8 1055 31.2
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 1.1e-111 409.5 1128 28.6
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 8.5e-109 399.8 904 31.2
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 4.0e-106 391.0 389 54.5
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 3.5e-102 377.9 372 57.0
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 1.1e-100 372.9 989 30.4
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 4.2e-100 370.9 383 52.2
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 1.5e-92 345.9 720 36.9
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 1.2e-91 342.8 594 38.0
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.4e-66 259.6 239 55.6
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 1.6e-62 246.1 338 39.9
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 1.6e-46 193.0 717 27.5
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 3.9e-45 188.3 156 58.3
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 2.5e-44 185.7 239 45.2
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 3.3e-44 185.3 571 30.1
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 2.6e-41 175.6 429 30.5
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.8e-37 162.9 430 29.1
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 6.7e-37 161.0 448 29.5
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 3.5e-22 112.1 321 28.7
CBR_g36536 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-20 105.5 727 21.5
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 1.1e-18 100.5 79 65.8
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 6.1e-14 84.7 74 56.8


User provided reference genes

Program Settings