Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 2.2e-122 442.2 209 100.0
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 9.8e-62 240.7 182 68.1
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 2.9e-61 239.2 182 65.4
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 6.4e-61 238.0 182 66.5
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 8.3e-61 237.7 182 68.1
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 1.9e-60 236.5 182 67.6
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 4.1e-60 235.3 182 64.8
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 4.1e-60 235.3 182 66.5
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 7.0e-60 234.6 182 64.3
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 9.2e-60 234.2 182 67.0
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 1.2e-59 233.8 182 66.5
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 1.2e-59 233.8 182 65.9
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 2.1e-59 233.0 182 64.8
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 3.5e-59 232.3 182 64.8
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 4.6e-59 231.9 182 64.3
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 4.6e-59 231.9 182 65.4
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 4.6e-59 231.9 182 64.8
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 7.8e-59 231.1 182 65.9
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 1.0e-58 230.7 182 64.8
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 1.7e-58 229.9 182 65.4
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 1.7e-58 229.9 182 65.9
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 1.7e-58 229.9 181 65.2
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 1.7e-58 229.9 182 65.4
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 3.0e-58 229.2 182 63.2
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 1.1e-57 227.3 182 64.3
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 1.1e-57 227.3 182 64.3
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 1.5e-57 226.9 182 63.2
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 2.5e-57 226.1 169 66.3
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 3.3e-57 225.7 182 64.3
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 4.3e-57 225.3 182 63.2
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 5.6e-57 224.9 182 64.3
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 5.6e-57 224.9 182 63.2
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 7.3e-57 224.6 182 61.5
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 7.3e-57 224.6 182 62.6
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 7.3e-57 224.6 182 63.2
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 9.5e-57 224.2 182 63.2
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 9.5e-57 224.2 164 67.7
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 9.5e-57 224.2 182 62.1
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 1.2e-56 223.8 164 67.1
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 1.2e-56 223.8 182 62.6
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 1.2e-56 223.8 182 62.6
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 2.1e-56 223.0 169 64.5
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 2.1e-56 223.0 182 62.1
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 8.1e-56 221.1 182 62.6
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 1.1e-55 220.7 182 61.5
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 1.4e-55 220.3 182 63.2
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 1.8e-55 219.9 169 63.9
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 2.3e-55 219.5 169 64.5
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 2.3e-55 219.5 169 64.5
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 2.3e-55 219.5 182 61.5
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 5.2e-55 218.4 169 64.5
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 5.2e-55 218.4 183 60.1
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 6.8e-55 218.0 182 62.1
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 6.8e-55 218.0 174 63.2
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 8.9e-55 217.6 169 64.5
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 8.9e-55 217.6 182 61.0
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 8.9e-55 217.6 182 61.0
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 1.5e-54 216.9 177 64.4
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 1.5e-54 216.9 182 62.1
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 2.0e-54 216.5 182 61.0
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 2.0e-54 216.5 182 59.9
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 2.6e-54 216.1 169 63.9
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 2.6e-54 216.1 169 63.9
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 4.4e-54 215.3 182 61.5
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 4.4e-54 215.3 174 63.2
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 5.8e-54 214.9 182 61.0
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 9.9e-54 214.2 169 63.9
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 1.3e-53 213.8 174 62.1
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.3e-53 213.8 182 59.9
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 1.7e-53 213.4 182 62.6
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.2e-53 213.0 174 62.1
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 2.2e-53 213.0 182 60.4
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 2.9e-53 212.6 169 62.7
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 2.9e-53 212.6 182 59.9
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 4.9e-53 211.8 169 62.1
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 4.9e-53 211.8 182 60.4
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 6.4e-53 211.5 169 61.5
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 8.3e-53 211.1 182 60.4
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 1.1e-52 210.7 169 61.5
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.1e-52 210.7 174 61.5
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 1.1e-52 210.7 174 60.9
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 1.1e-52 210.7 182 59.9
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 1.4e-52 210.3 169 61.5
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 2.4e-52 209.5 182 59.9
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 3.2e-52 209.1 169 60.4
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 4.1e-52 208.8 236 49.6
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 7.1e-52 208.0 182 59.9
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 1.6e-51 206.8 168 66.1
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 7.8e-51 204.5 167 61.1
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 1.3e-50 203.8 169 61.5
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 1.5e-49 200.3 181 56.4
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 5.6e-49 198.4 239 46.9
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 1.2e-48 197.2 169 61.5
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 2.8e-48 196.1 186 55.9
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 8.1e-48 194.5 169 57.4
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 5.2e-47 191.8 189 55.6
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.3e-45 187.2 157 60.5
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 1.7e-45 186.8 169 56.2
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.7e-45 186.8 153 60.8
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 1.2e-43 180.6 143 65.7
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 1.6e-43 180.3 147 64.6
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 2.7e-43 179.5 151 60.9
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.0e-42 176.0 150 59.3
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.0e-42 176.0 150 59.3
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 1.1e-41 174.1 169 53.3
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.5e-41 172.9 150 58.7
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.1e-39 167.5 143 59.4
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 2.4e-39 166.4 132 62.9
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 1.5e-38 163.7 169 51.5
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 1.7e-37 160.2 170 49.4
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 2.2e-37 159.8 169 50.3
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 1.5e-33 147.1 169 50.9
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 9.9e-30 134.4 76 81.6
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 6.4e-29 131.7 76 76.3
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 3.9e-26 122.5 121 54.5
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 2.8e-24 116.3 132 46.2
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 4.8e-24 115.5 118 52.5
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 1.5e-22 110.5 107 54.2
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 1.7e-21 107.1 173 39.9
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 2.5e-20 103.2 188 38.8
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 4.2e-20 102.4 65 73.8
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 1.2e-19 100.9 81 59.3
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 1.6e-19 100.5 179 38.0
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 1.0e-18 97.8 65 70.8
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 1.5e-14 84.0 55 70.9
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 1.3e-13 80.9 179 29.1
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.2e-12 76.3 109 40.4
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 2.1e-11 73.6 42 88.1
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 2.1e-11 73.6 42 88.1
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 6.1e-11 72.0 42 85.7
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 1.0e-10 71.2 51 68.6
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 5.3e-07 58.9 51 60.8
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 2.6e-06 56.6 29 82.8
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 4.5e-06 55.8 29 82.8
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 5.9e-06 55.5 51 56.9


User provided reference genes

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