Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 1.4e-105 386.3 203 100.0
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 4.1e-81 305.1 197 77.2
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 5.4e-81 304.7 197 79.7
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 1.3e-79 300.1 201 77.1
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 4.3e-78 295.0 198 77.8
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 4.7e-77 291.6 198 76.3
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 2.0e-75 286.2 186 78.0
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 4.4e-75 285.0 198 74.7
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 9.8e-75 283.9 239 64.9
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 3.2e-73 278.9 197 70.6
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 1.0e-71 273.9 197 69.0
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 1.0e-71 273.9 197 68.5
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 2.5e-70 269.2 197 68.5
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 2.5e-70 269.2 198 69.7
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 4.7e-69 265.0 197 66.5
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 8.1e-69 264.2 198 69.7
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 2.3e-68 262.7 197 66.5
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 4.0e-68 261.9 184 72.3
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 5.2e-68 261.5 197 65.0
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 1.2e-67 260.4 200 67.5
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.3e-66 256.9 198 65.7
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 2.2e-66 256.1 197 65.0
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 2.2e-66 256.1 198 65.7
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 2.9e-66 255.8 197 63.5
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 2.9e-66 255.8 200 65.0
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 3.7e-66 255.4 198 65.2
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 4.9e-66 255.0 197 65.5
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 1.1e-65 253.8 200 67.0
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 1.6e-64 250.0 199 64.3
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 3.5e-64 248.8 184 66.8
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 3.5e-64 248.8 198 65.7
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 3.5e-64 248.8 202 61.9
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 3.5e-64 248.8 187 67.4
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 6.0e-64 248.1 200 62.0
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 7.8e-64 247.7 200 62.0
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 1.0e-63 247.3 203 59.6
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 1.0e-63 247.3 197 60.4
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 5.1e-63 245.0 202 64.4
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 1.9e-62 243.0 197 61.4
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 5.6e-62 241.5 184 66.3
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 5.6e-62 241.5 203 58.1
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 1.1e-60 237.3 201 61.7
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.1e-60 237.3 185 65.9
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 1.1e-60 237.3 197 61.9
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 1.2e-59 233.8 205 61.5
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 2.0e-59 233.0 200 59.5
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 2.6e-59 232.6 167 71.9
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 4.4e-59 231.9 185 62.2
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 1.3e-58 230.3 187 60.4
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.3e-58 230.3 200 59.0
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 2.2e-58 229.6 199 55.8
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 1.9e-57 226.5 200 58.5
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 2.4e-57 226.1 197 56.9
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 4.2e-57 225.3 206 58.7
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 3.5e-56 222.2 199 57.8
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 1.0e-55 220.7 184 62.5
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 2.3e-55 219.5 154 71.4
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 3.9e-55 218.8 199 57.8
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 1.1e-54 217.2 199 53.8
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 1.1e-54 217.2 198 54.5
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.5e-54 216.9 197 56.3
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.3e-54 215.7 206 55.8
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 4.3e-54 215.3 199 58.3
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 5.6e-54 214.9 196 57.1
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 9.6e-54 214.2 199 57.3
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 1.6e-53 213.4 163 67.5
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 4.8e-53 211.8 199 53.8
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 4.8e-53 211.8 199 53.8
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 4.8e-53 211.8 232 51.7
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 8.1e-53 211.1 190 58.4
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 6.9e-52 208.0 197 52.8
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 6.9e-52 208.0 154 69.5
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 1.2e-51 207.2 199 52.3
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 1.2e-51 207.2 179 58.1
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 1.2e-51 207.2 199 52.3
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 1.5e-51 206.8 199 49.2
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 7.6e-51 204.5 184 58.2
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 9.9e-51 204.1 197 53.8
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 9.9e-51 204.1 139 76.3
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 1.7e-50 203.4 197 51.8
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 4.9e-50 201.8 199 52.3
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 4.9e-50 201.8 199 50.3
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 1.4e-49 200.3 184 58.2
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 5.4e-49 198.4 199 49.7
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 9.3e-49 197.6 199 49.7
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 1.6e-48 196.8 199 49.7
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 6.0e-48 194.9 197 52.8
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 2.5e-46 189.5 202 51.0
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 4.3e-46 188.7 202 51.5
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 4.8e-45 185.3 174 56.3
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 1.8e-44 183.3 205 46.3
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 9.0e-44 181.0 143 65.0
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 1.9e-41 173.3 184 47.3
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 4.2e-41 172.2 162 55.6
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 2.7e-40 169.5 176 52.8
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 6.7e-39 164.9 199 43.7
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 6.7e-39 164.9 186 51.1
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 8.7e-39 164.5 196 42.9
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 2.8e-37 159.5 185 47.6
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 4.0e-36 155.6 192 44.3
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 2.0e-35 153.3 110 70.9
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 3.8e-34 149.1 184 47.3
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 4.9e-34 148.7 117 68.4
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.6e-32 143.7 127 57.5
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 1.3e-31 140.6 145 52.4
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 1.9e-30 136.7 156 46.2
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 7.4e-30 134.8 109 59.6
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 7.4e-30 134.8 145 48.3
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.4e-28 129.8 151 46.4
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 2.0e-27 126.7 110 64.5
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 2.9e-26 122.9 113 57.5
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.1e-25 120.9 87 72.4
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 3.5e-24 115.9 189 35.4
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 6.7e-23 111.7 154 40.3
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 6.7e-23 111.7 105 53.3
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.5e-22 110.5 88 62.5
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 9.7e-22 107.8 80 66.2
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 2.6e-19 99.8 190 32.1
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 2.9e-18 96.3 61 68.9
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 1.4e-17 94.0 84 56.0
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 4.8e-13 79.0 120 39.2
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 3.4e-11 72.8 45 73.3
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 5.9e-11 72.0 68 55.9
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 3.2e-09 66.2 101 46.5
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 2.1e-08 63.5 55 61.8
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 4.7e-08 62.4 36 80.6


User provided reference genes

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