Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 1.3e-60 236.1 116 100.0
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 1.3e-50 203.0 116 85.3
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 4.8e-50 201.1 116 84.5
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 8.2e-50 200.3 116 83.6
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 1.4e-49 199.5 116 82.8
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 1.8e-49 199.1 116 82.8
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 1.8e-49 199.1 116 82.8
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 3.1e-49 198.4 116 81.9
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 1.0e-47 193.4 112 80.4
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 2.5e-46 188.7 112 78.6
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 3.2e-46 188.3 113 78.8
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 7.2e-46 187.2 112 76.8
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 7.2e-46 187.2 115 73.9
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 2.7e-45 185.3 112 78.6
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 4.6e-45 184.5 116 73.3
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 6.1e-45 184.1 140 68.6
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 1.0e-44 183.3 112 75.9
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 3.9e-44 181.4 116 72.4
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 6.7e-44 180.6 116 73.3
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 8.8e-44 180.3 116 72.4
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 1.1e-43 179.9 112 75.9
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 1.5e-43 179.5 116 73.3
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 2.0e-43 179.1 116 72.4
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 3.3e-43 178.3 116 71.6
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 4.3e-43 177.9 116 72.4
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 5.7e-43 177.6 112 73.2
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 5.7e-43 177.6 116 71.6
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 5.7e-43 177.6 112 71.4
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 7.4e-43 177.2 116 70.7
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 1.3e-42 176.4 114 70.2
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 1.7e-42 176.0 112 71.4
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 1.7e-42 176.0 111 73.9
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 2.2e-42 175.6 112 70.5
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 2.8e-42 175.3 110 73.6
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 2.8e-42 175.3 112 71.4
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 2.8e-42 175.3 111 73.0
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 3.7e-42 174.9 112 70.5
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 4.8e-42 174.5 114 70.2
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 6.3e-42 174.1 116 70.7
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 6.3e-42 174.1 112 70.5
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 8.2e-42 173.7 111 73.0
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 8.2e-42 173.7 111 72.1
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.1e-41 173.3 112 70.5
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 1.4e-41 172.9 116 69.0
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 1.4e-41 172.9 116 69.8
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.8e-41 172.6 112 71.4
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 2.4e-41 172.2 113 70.8
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.4e-41 172.2 112 69.6
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 4.1e-41 171.4 111 72.1
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 4.1e-41 171.4 111 71.2
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 4.1e-41 171.4 114 69.3
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 6.9e-41 170.6 112 69.6
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 9.1e-41 170.2 112 70.5
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 1.2e-40 169.9 114 67.5
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 1.5e-40 169.5 111 69.4
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 1.5e-40 169.5 112 68.8
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 1.5e-40 169.5 111 70.3
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 2.0e-40 169.1 111 71.2
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 2.0e-40 169.1 112 68.8
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 2.0e-40 169.1 111 68.5
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 2.6e-40 168.7 112 69.6
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 3.4e-40 168.3 116 68.1
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 4.5e-40 167.9 111 68.5
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 5.9e-40 167.5 116 67.2
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 7.7e-40 167.2 116 67.2
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 1.0e-39 166.8 111 68.5
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 1.0e-39 166.8 111 69.4
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 1.3e-39 166.4 111 67.6
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 1.3e-39 166.4 111 67.6
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 1.3e-39 166.4 111 67.6
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 1.7e-39 166.0 112 67.9
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 1.7e-39 166.0 116 66.4
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 2.9e-39 165.2 111 67.6
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 3.8e-39 164.9 111 67.6
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 3.8e-39 164.9 116 67.2
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 3.8e-39 164.9 111 67.6
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 3.8e-39 164.9 111 66.7
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 5.0e-39 164.5 111 66.7
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 6.5e-39 164.1 114 67.5
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 1.4e-38 162.9 113 67.3
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 1.4e-38 162.9 111 64.9
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 1.9e-38 162.5 111 65.8
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 1.9e-38 162.5 111 65.8
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 3.2e-38 161.8 112 65.2
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 1.2e-37 159.8 108 68.5
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 3.6e-37 158.3 111 64.0
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 4.7e-37 157.9 112 63.4
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 7.9e-37 157.1 108 66.7
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 1.0e-36 156.8 111 66.7
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 3.0e-36 155.2 108 65.7
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 3.9e-36 154.8 111 64.9
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 3.9e-36 154.8 111 63.1
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 6.7e-36 154.1 132 56.8
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 6.7e-36 154.1 112 64.3
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 2.0e-35 152.5 113 66.4
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 5.7e-35 151.0 126 56.3
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 2.2e-34 149.1 113 64.6
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.1e-33 146.7 113 61.1
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 4.1e-33 144.8 113 61.1
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 1.2e-32 143.3 108 58.3
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 2.0e-32 142.5 110 57.3
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 1.0e-31 140.2 84 83.3
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 2.2e-31 139.0 109 57.8
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 5.0e-31 137.9 98 60.2
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 2.1e-29 132.5 96 61.5
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 3.6e-29 131.7 110 53.6
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 4.7e-29 131.3 86 67.4
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 4.7e-29 131.3 107 58.9
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 8.0e-29 130.6 86 66.3
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 1.8e-28 129.4 108 55.6
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 3.9e-28 128.3 134 48.5
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 5.2e-28 127.9 100 61.0
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 8.8e-28 127.1 82 67.1
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 1.3e-26 123.2 179 39.7
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 3.7e-26 121.7 110 49.1
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 3.5e-24 115.2 73 75.3
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 5.9e-24 114.4 111 45.9
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 6.5e-23 110.9 66 72.7
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 7.2e-22 107.5 88 55.7
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 9.4e-22 107.1 75 68.0
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 9.4e-22 107.1 75 68.0
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 3.6e-21 105.1 66 71.2
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 6.1e-21 104.4 70 72.9
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 5.2e-20 101.3 55 78.2
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 1.2e-19 100.1 113 44.2
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 1.5e-19 99.8 133 38.3
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.5e-19 99.8 59 71.2
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 9.7e-19 97.1 72 56.9
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.3e-18 96.7 70 68.6
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 4.8e-18 94.7 80 56.2
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 1.2e-16 90.1 61 72.1
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 1.4e-12 76.6 54 68.5
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 6.8e-12 74.3 65 50.8
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 4.8e-10 68.2 48 70.8
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 1.2e-08 63.5 60 51.7
CiPaw.09G101200 Carya illinoinensis HOM05D005610 ORTHO05D006181 5.0e-07 58.2 46 60.9


User provided reference genes

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