Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 1.6e-42 175.6 86 100.0
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 2.9e-12 75.1 53 73.6
Lj2g0021563 Lotus japonicus HOM05D005346 ORTHO05D235932 6.6e-12 73.9 37 97.3
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 7.2e-11 70.5 51 70.6
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 7.2e-11 70.5 51 72.5
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.2e-10 69.7 51 70.6
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 1.2e-10 69.7 51 70.6
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.2e-10 69.7 51 70.6
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.2e-10 69.7 51 70.6
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.6e-10 69.3 51 68.6
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 1.6e-10 69.3 51 68.6
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 1.6e-10 69.3 51 68.6
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.6e-10 69.3 51 68.6
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.6e-10 69.3 53 66.0
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 2.1e-10 68.9 51 70.6
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 2.1e-10 68.9 51 68.6
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 2.1e-10 68.9 51 70.6
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 2.1e-10 68.9 51 70.6
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 2.8e-10 68.6 51 70.6
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 2.8e-10 68.6 51 68.6
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 3.6e-10 68.2 51 68.6
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 3.6e-10 68.2 51 70.6
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 3.6e-10 68.2 51 68.6
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 3.6e-10 68.2 51 68.6
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 3.6e-10 68.2 51 68.6
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 3.6e-10 68.2 51 70.6
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 3.6e-10 68.2 51 68.6
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 4.7e-10 67.8 51 68.6
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 4.7e-10 67.8 51 68.6
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 4.7e-10 67.8 51 68.6
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 4.7e-10 67.8 51 68.6
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 4.7e-10 67.8 51 66.7
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 4.7e-10 67.8 51 68.6
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 8.0e-10 67.0 51 68.6
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 8.0e-10 67.0 51 68.6
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 8.0e-10 67.0 51 66.7
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 8.0e-10 67.0 51 68.6
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 1.0e-09 66.6 51 66.7
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 1.0e-09 66.6 51 64.7
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 1.0e-09 66.6 51 66.7
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 1.0e-09 66.6 51 68.6
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 1.0e-09 66.6 51 66.7
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 1.0e-09 66.6 51 66.7
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 1.0e-09 66.6 51 68.6
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.0e-09 66.6 51 68.6
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.0e-09 66.6 51 64.7
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 1.4e-09 66.2 51 64.7
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.4e-09 66.2 51 66.7
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 1.4e-09 66.2 51 66.7
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 1.4e-09 66.2 51 66.7
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 1.4e-09 66.2 51 66.7
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 1.4e-09 66.2 51 66.7
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.4e-09 66.2 51 66.7
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.4e-09 66.2 51 64.7
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 1.4e-09 66.2 51 66.7
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.4e-09 66.2 51 66.7
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 1.8e-09 65.9 90 45.6
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 1.8e-09 65.9 51 64.7
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 1.8e-09 65.9 51 66.7
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.8e-09 65.9 50 66.0
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 2.3e-09 65.5 51 64.7
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 2.3e-09 65.5 51 66.7
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.3e-09 65.5 51 64.7
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 2.3e-09 65.5 51 66.7
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.0e-09 65.1 51 68.6
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 3.0e-09 65.1 51 64.7
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.0e-09 65.1 51 64.7
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 3.0e-09 65.1 51 66.7
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 3.0e-09 65.1 51 64.7
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 3.0e-09 65.1 51 66.7
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 4.0e-09 64.7 51 64.7
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 4.0e-09 64.7 50 68.0
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 6.8e-09 63.9 51 66.7
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 6.8e-09 63.9 51 64.7
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 6.8e-09 63.9 51 64.7
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 6.8e-09 63.9 51 60.8
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 6.8e-09 63.9 51 62.7
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 8.9e-09 63.5 51 62.7
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 8.9e-09 63.5 50 64.0
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 1.2e-08 63.2 51 62.7
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.2e-08 63.2 51 62.7
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 1.2e-08 63.2 51 62.7
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.5e-08 62.8 51 64.7
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.5e-08 62.8 51 64.7
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 2.0e-08 62.4 51 60.8
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 2.0e-08 62.4 51 64.7
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 2.0e-08 62.4 51 60.8
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 2.0e-08 62.4 51 62.7
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 2.6e-08 62.0 51 64.7
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 3.4e-08 61.6 51 58.8
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 3.4e-08 61.6 51 62.7
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 3.4e-08 61.6 51 60.8
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 3.4e-08 61.6 51 62.7
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 3.4e-08 61.6 51 60.8
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 7.5e-08 60.5 73 49.3
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 7.5e-08 60.5 51 62.7
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 7.5e-08 60.5 51 62.7
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 9.8e-08 60.1 51 58.8
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 1.7e-07 59.3 51 58.8
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.2e-07 58.9 51 58.8
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 2.2e-07 58.9 51 62.7
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 3.7e-07 58.2 51 64.7
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 3.7e-07 58.2 51 56.9
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 6.3e-07 57.4 68 47.1
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 8.3e-07 57.0 51 56.9
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 8.3e-07 57.0 51 60.8
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 8.3e-07 57.0 51 58.8
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 8.3e-07 57.0 51 58.8
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 1.1e-06 56.6 64 45.3
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.8e-06 55.8 51 54.9


User provided reference genes

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