Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0026253 Lotus japonicus HOM05D007989 ORTHO05D010087 1.8e-96 355.9 184 100.0
Medtr3g086760 Medicago truncatula HOM05D007989 ORTHO05D010087 1.6e-63 246.5 209 64.6
Glyma.18G014700 Glycine max HOM05D007989 ORTHO05D010087 1.2e-58 230.3 193 69.4
TPR.G30536 Trifolium pratense HOM05D007989 ORTHO05D010087 2.4e-56 222.6 201 63.7
Ca_30637_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 7.1e-56 221.1 200 63.0
Phvul.001G254200 Phaseolus vulgaris HOM05D007989 ORTHO05D010087 2.7e-55 219.2 192 64.6
arahy.Tifrunner.gnm1.ann1.92LXSJ Arachis hypogaea HOM05D007989 ORTHO05D010087 4.6e-55 218.4 207 59.9
Glyma.11G242400 Glycine max HOM05D007989 ORTHO05D010087 5.1e-54 214.9 195 66.2
arahy.Tifrunner.gnm1.ann1.FU6RJX Arachis hypogaea HOM05D007989 ORTHO05D010087 3.1e-51 205.7 203 58.6
Psat1g083960 Pisum sativum HOM05D007989 ORTHO05D010087 4.0e-51 205.3 193 62.7
VMungo1383G0535 Vigna mungo HOM05D007989 ORTHO05D010087 5.3e-51 204.9 202 61.4
Lalb_Chr08g0230941 Lupinus albus HOM05D007989 ORTHO05D010087 1.2e-42 177.2 137 71.5
Haze_24825 Corylus avellana HOM05D007989 ORTHO05D010087 5.5e-32 141.7 202 46.5
Haze_24830 Corylus avellana HOM05D007989 ORTHO05D010087 5.5e-32 141.7 202 46.5
Cfa002588 Carpinus fangiana HOM05D007989 ORTHO05D010087 7.2e-32 141.4 179 51.4
TWI53G0073 Tripterygium wilfordii HOM05D007989 ORTHO05D010087 2.1e-31 139.8 196 45.4
Dinv08871 Davidia involucrata HOM05D007989 ORTHO05D010087 2.7e-31 139.4 180 48.9
MD01G1036700 Malus domestica HOM05D007989 ORTHO05D010087 2.3e-30 136.3 185 48.1
COL.COLO4_27300 Corchorus olitorius HOM05D007989 ORTHO05D010087 6.7e-30 134.8 198 46.0
Prupe.6G193900 Prunus persica HOM05D007989 ORTHO05D010087 1.5e-29 133.7 188 47.9
MD15G1317900 Malus domestica HOM05D007989 ORTHO05D010087 1.9e-29 133.3 185 47.0
Ca_16505_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 5.7e-29 131.7 147 57.8
FvH4_1g20210 Fragaria vesca HOM05D007989 ORTHO05D010087 5.7e-29 131.7 183 48.6
FAN19G2348 Fragaria x ananassa HOM05D007989 ORTHO05D010087 7.4e-29 131.3 183 48.6
Atru.chr3.1338 Acer truncatum HOM05D007989 ORTHO05D010087 9.7e-29 131.0 195 45.6
Duzib147G0239 Durio zibethinus HOM05D007989 ORTHO05D010087 9.7e-29 131.0 195 45.1
Thecc.01G095100 Theobroma cacao HOM05D007989 ORTHO05D010087 2.2e-28 129.8 145 53.1
CiPaw.04G104100 Carya illinoinensis HOM05D007989 ORTHO05D010087 4.8e-28 128.6 136 58.1
QL06p047951 Quercus lobata HOM05D007989 ORTHO05D010087 4.8e-28 128.6 199 46.2
FAN23G0861 Fragaria x ananassa HOM05D007989 ORTHO05D010087 1.8e-27 126.7 166 50.0
FAN26G0087 Fragaria x ananassa HOM05D007989 ORTHO05D010087 1.8e-27 126.7 183 47.0
RcHm_v2.0_Chr2g0112271 Rosa chinensis HOM05D007989 ORTHO05D010087 3.1e-27 125.9 163 50.9
FAN28G0040 Fragaria x ananassa HOM05D007989 ORTHO05D010087 1.2e-26 124.0 169 47.9
Manes.13G097300 Manihot esculenta HOM05D007989 ORTHO05D010087 1.2e-26 124.0 182 47.8
CiPaw.03G146300 Carya illinoinensis HOM05D007989 ORTHO05D010087 2.0e-26 123.2 133 58.6
Rhsim10G0168900 Rhododendron simsii HOM05D007989 ORTHO05D010087 4.5e-26 122.1 132 53.0
Ciclev10026467m.g Citrus clementina HOM05D007989 ORTHO05D010087 5.9e-26 121.7 173 44.5
CANSAT01G0464 Cannabis sativa HOM05D007989 ORTHO05D010087 7.7e-26 121.3 186 44.6
Potri.007G097400 Populus trichocarpa HOM05D007989 ORTHO05D010087 2.5e-24 116.3 122 54.9
Potri.005G071400 Populus trichocarpa HOM05D007989 ORTHO05D010087 4.2e-24 115.5 131 52.7
Sabra07G0080700 Salix brachista HOM05D007989 ORTHO05D010087 3.6e-23 112.5 125 53.6
Cpa.g.sc55.66 Carica papaya HOM05D007989 ORTHO05D010087 1.0e-22 110.9 204 40.2
Gorai.003G041700 Gossypium raimondii HOM05D007989 ORTHO05D010087 2.3e-22 109.8 218 38.1
TAR628G0250 Trochodendron aralioides HOM05D007989 ORTHO05D010087 3.0e-22 109.4 180 42.8
Gohir.A02G130000 Gossypium hirsutum HOM05D007989 ORTHO05D010087 3.9e-22 109.0 215 38.1
vmacro12990 Vaccinium macrocarpon HOM05D007989 ORTHO05D010087 3.9e-22 109.0 125 50.4
Gohir.D03G040900 Gossypium hirsutum HOM05D007989 ORTHO05D010087 5.1e-22 108.6 218 38.1
Nitab4.5_0005930g0030 Nicotiana tabacum HOM05D007989 ORTHO05D010087 2.5e-21 106.3 172 39.5
Actinidia06535 Actinidia chinensis HOM05D007989 ORTHO05D010087 7.4e-21 104.8 127 48.8
Sabra05G0058400 Salix brachista HOM05D007989 ORTHO05D010087 7.4e-21 104.8 123 50.4
AUR62027199 Chenopodium quinoa HOM05D007989 ORTHO05D010087 2.8e-20 102.8 169 43.2
Hma1.2p1_0019F.1_g013880 Hydrangea macrophylla HOM05D007989 ORTHO05D010087 4.8e-20 102.1 120 50.0
Nitab4.5_0000241g0120 Nicotiana tabacum HOM05D007989 ORTHO05D010087 4.8e-20 102.1 172 39.5
PSO541G3922 Papaver somniferum HOM05D007989 ORTHO05D010087 8.2e-20 101.3 136 46.3
Nn1g05466 Nelumbo nucifera HOM05D007989 ORTHO05D010087 2.4e-19 99.8 161 41.6
EL10Ac6g14814 Beta vulgaris HOM05D007989 ORTHO05D010087 5.3e-19 98.6 192 38.5
Aqoxy6G00707 Aquilegia oxysepala HOM05D007989 ORTHO05D010087 1.5e-18 97.1 184 40.2
PSO675G2967 Papaver somniferum HOM05D007989 ORTHO05D010087 1.7e-17 93.6 133 47.4
CAN.G905.6 Capsicum annuum HOM05D007989 ORTHO05D010087 1.4e-16 90.5 179 34.6
MBI06_g03317_MAGBIO Magnolia biondii HOM05D007989 ORTHO05D010087 1.9e-16 90.1 200 38.5
Migut.H02322 Erythranthe guttata HOM05D007989 ORTHO05D010087 4.7e-15 85.5 147 38.1
PGR004G2401 Punica granatum HOM05D007989 ORTHO05D010087 8.8e-14 81.3 161 40.4
Solyc11g010320.1 Solanum lycopersicum HOM05D007989 ORTHO05D010087 2.2e-12 76.6 139 38.8
Oeu002158.1 Olea europaea HOM05D007989 ORTHO05D010087 3.7e-12 75.9 86 50.0
Sopen11g005100 Solanum pennellii HOM05D007989 ORTHO05D010087 6.3e-12 75.1 142 38.0
PGSC0003DMG401016146 Solanum tuberosum HOM05D007989 ORTHO05D010087 6.3e-12 75.1 139 38.8
ClCG10G008400 Citrullus lanatus HOM05D007989 ORTHO05D010087 2.4e-11 73.2 122 42.6
CsaV3_4G009020 Cucumis sativus L. HOM05D007989 ORTHO05D010087 5.3e-11 72.0 121 41.3
MELO3C018999.2 Cucumis melo HOM05D007989 ORTHO05D010087 2.6e-10 69.7 121 40.5
Carub.0001s0097 Capsella rubella HOM05D002476 ORTHO05D002652 2.2e-09 66.6 140 35.7
Sc16g0000320 Simmondsia chinensis HOM05D007989 ORTHO05D010087 2.9e-09 66.2 65 55.4
AT2G46550 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 5.0e-09 65.5 145 35.2
Sed0027218 Sechium edule HOM05D007989 ORTHO05D010087 6.5e-09 65.1 101 42.6
BraA09t42240Z Brassica rapa HOM05D002476 ORTHO05D002652 8.5e-09 64.7 139 36.7
Aa31LG1G10610 Aethionema arabicum HOM05D002476 ORTHO05D002652 1.9e-08 63.5 121 40.5
AL1G11220 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 2.5e-08 63.2 140 34.3
BcaC02g12672 Brassica carinata HOM05D002476 ORTHO05D002652 3.2e-08 62.8 135 34.8
Psat3g119280 Pisum sativum HOM05D007989 ORTHO05D010087 2.1e-07 60.1 38 78.9
Carub.0004s2927 Capsella rubella HOM05D002476 ORTHO05D002652 2.7e-07 59.7 123 35.0
Sp4g28600 Schrenkiella parvula HOM05D002476 ORTHO05D002652 3.6e-07 59.3 141 33.3
CARHR001220 Cardamine hirsuta HOM05D002476 ORTHO05D002652 4.7e-07 58.9 134 34.3
PSO135G0353 Papaver somniferum HOM05D002476 ORTHO05D002652 4.7e-07 58.9 172 27.9
AL4G45980 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 8.0e-07 58.2 127 34.6
AT1G01240 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 8.0e-07 58.2 135 34.1
A10p00670 Brassica napus HOM05D002476 ORTHO05D002652 8.0e-07 58.2 141 34.8
Sp1g01040 Schrenkiella parvula HOM05D002476 ORTHO05D002652 8.0e-07 58.2 136 33.8
arahy.Tifrunner.gnm1.ann1.9N50L0 Arachis hypogaea HOM05D002476 ORTHO05D002652 1.0e-06 57.8 143 32.9
C04p72220 Brassica napus HOM05D002476 ORTHO05D002652 1.4e-06 57.4 120 35.0
BolC4t21790H Brassica oleracea HOM05D002476 ORTHO05D002652 1.4e-06 57.4 150 32.7
CARHR141890 Cardamine hirsuta HOM05D002476 ORTHO05D002652 1.4e-06 57.4 120 33.3
THA.LOC104825884 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 1.4e-06 57.4 155 31.6
Aa31LG1G27930 Aethionema arabicum HOM05D002476 ORTHO05D002652 1.8e-06 57.0 120 36.7
A09p69030 Brassica napus HOM05D002476 ORTHO05D002652 1.8e-06 57.0 142 33.8
C04p01370 Brassica napus HOM05D002476 ORTHO05D002652 1.8e-06 57.0 150 32.7
ATR0758G001 Amborella trichopoda HOM05D002476 ORTHO05D010087 2.3e-06 56.6 72 45.8
BcaC02g07040 Brassica carinata HOM05D002476 ORTHO05D002652 2.3e-06 56.6 120 35.0
BcaNung06659 Brassica carinata HOM05D002476 ORTHO05D002652 2.3e-06 56.6 120 35.0
A05p01220 Brassica napus HOM05D002476 ORTHO05D002652 2.3e-06 56.6 134 32.1
BolC4t28710H Brassica oleracea HOM05D002476 ORTHO05D002652 2.3e-06 56.6 120 34.2
BolC8t52874H Brassica oleracea HOM05D002476 ORTHO05D002652 2.3e-06 56.6 137 35.8
BraA05t19123Z Brassica rapa HOM05D002476 ORTHO05D002652 2.3e-06 56.6 134 32.1
Gohir.D07G142033 Gossypium hirsutum HOM05D002476 ORTHO05D002652 2.3e-06 56.6 151 29.8
THA.LOC104817374 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 2.3e-06 56.6 153 30.7
TPR.G4799 Trifolium pratense HOM05D002476 ORTHO05D002652 2.3e-06 56.6 175 29.7
Lsat_1_v5_gn_7_880 Lactuca sativa HOM05D002476 ORTHO05D002652 3.0e-06 56.2 130 33.8
Gorai.001G153700 Gossypium raimondii HOM05D002476 ORTHO05D002652 4.0e-06 55.8 151 29.8
BcaC02g07017 Brassica carinata HOM05D002476 ORTHO05D002652 5.2e-06 55.5 120 34.2
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 6.7e-06 55.1 150 32.0
Psat6g035000 Pisum sativum HOM05D002476 ORTHO05D002652 6.7e-06 55.1 120 35.0
arahy.Tifrunner.gnm1.ann1.2ZXA1E Arachis hypogaea HOM05D002476 ORTHO05D002652 8.8e-06 54.7 143 30.8
Psat3g001840 Pisum sativum HOM05D002476 ORTHO05D002652 8.8e-06 54.7 185 30.3


User provided reference genes

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