Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 8.9e-87 323.6 161 100.0
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 3.2e-68 261.9 153 80.4
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 5.4e-68 261.2 159 78.0
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 7.8e-67 257.3 166 74.7
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 6.6e-66 254.2 159 77.4
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 1.1e-65 253.4 162 76.5
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 3.3e-65 251.9 153 77.1
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 3.1e-63 245.4 160 76.2
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 3.1e-63 245.4 158 74.7
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 6.0e-59 231.1 151 71.5
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 2.1e-48 196.1 137 62.8
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 2.3e-42 176.0 122 73.0
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 2.5e-41 172.6 135 58.5
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 5.6e-41 171.4 135 57.0
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 5.3e-39 164.9 154 51.3
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 6.9e-39 164.5 155 53.5
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 2.0e-38 162.9 162 49.4
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 2.6e-38 162.5 161 49.7
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 4.5e-38 161.8 154 50.6
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 7.6e-38 161.0 116 62.9
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 1.0e-37 160.6 161 49.7
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.2e-37 159.5 160 51.2
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 1.9e-36 156.4 158 49.4
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.9e-36 156.4 153 48.4
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 2.5e-36 156.0 154 50.0
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 1.6e-35 153.3 154 48.7
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 2.7e-35 152.5 161 44.1
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 7.9e-35 151.0 150 50.7
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.0e-34 150.6 162 44.4
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.3e-34 150.2 138 52.2
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 3.9e-34 148.7 166 48.2
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 5.1e-34 148.3 155 48.4
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 5.1e-34 148.3 155 48.4
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 5.1e-34 148.3 153 48.4
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 6.7e-34 147.9 162 43.2
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.5e-33 146.7 161 44.7
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 2.5e-33 146.0 153 47.7
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 3.3e-33 145.6 123 56.9
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.3e-32 143.7 153 47.1
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 6.9e-31 137.9 123 53.7
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.4e-30 135.6 166 44.6
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 3.4e-30 135.6 145 47.6
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 7.6e-30 134.4 123 54.5
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.0e-29 134.0 163 46.0
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 6.5e-29 131.3 148 39.9
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 8.5e-29 131.0 154 43.5
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.1e-28 130.6 103 55.3
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 3.2e-28 129.0 124 49.2
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.2e-27 127.1 129 46.5
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 2.1e-27 126.3 157 41.4
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 4.6e-27 125.2 133 43.6
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 1.0e-26 124.0 140 43.6
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.8e-26 123.2 157 36.3
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 1.8e-26 123.2 155 40.6
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 3.0e-26 122.5 140 42.1
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 3.0e-26 122.5 140 42.1
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 3.9e-26 122.1 135 44.4
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 5.1e-26 121.7 137 44.5
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 5.1e-26 121.7 137 44.5
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 5.1e-26 121.7 142 41.5
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 5.1e-26 121.7 142 41.5
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 6.7e-26 121.3 135 43.7
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 6.7e-26 121.3 140 42.1
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 6.7e-26 121.3 153 37.3
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 6.7e-26 121.3 136 42.6
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 8.8e-26 120.9 155 38.1
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 1.1e-25 120.6 137 43.8
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.1e-25 120.6 135 44.4
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 1.1e-25 120.6 143 42.7
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 1.5e-25 120.2 156 38.5
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.5e-25 120.2 156 37.8
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 1.5e-25 120.2 158 41.1
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 1.5e-25 120.2 158 41.1
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.5e-25 120.2 137 45.3
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 2.5e-25 119.4 132 43.9
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 3.3e-25 119.0 136 44.1
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 3.3e-25 119.0 154 41.6
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 3.3e-25 119.0 151 39.1
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 4.3e-25 118.6 154 39.0
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 5.7e-25 118.2 136 44.9
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 5.7e-25 118.2 155 43.9
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.7e-24 116.7 153 36.6
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 1.7e-24 116.7 142 43.0
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.8e-24 115.9 155 38.7
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 2.8e-24 115.9 152 36.2
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 2.8e-24 115.9 155 38.1
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 3.7e-24 115.5 151 39.1
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.1e-23 114.0 115 47.8
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.4e-23 113.6 157 39.5
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 1.8e-23 113.2 129 42.6
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.8e-23 113.2 152 38.2
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 2.4e-23 112.8 157 36.3
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 3.1e-23 112.5 154 37.7
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 4.1e-23 112.1 151 33.8
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 4.1e-23 112.1 151 38.4
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 5.3e-23 111.7 129 42.6
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 5.3e-23 111.7 154 39.6
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 6.9e-23 111.3 160 36.2
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 6.9e-23 111.3 153 38.6
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 9.1e-23 110.9 153 37.3
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 1.2e-22 110.5 151 37.7
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 1.5e-22 110.2 152 37.5
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.5e-22 110.2 149 36.9
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 2.0e-22 109.8 152 38.2
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 2.6e-22 109.4 157 35.0
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 3.4e-22 109.0 153 36.6
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 4.5e-22 108.6 130 42.3
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 4.5e-22 108.6 155 37.4
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 4.5e-22 108.6 125 43.2
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 7.7e-22 107.8 149 39.6
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 7.7e-22 107.8 139 42.4
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 7.7e-22 107.8 129 41.9
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 1.0e-21 107.5 152 36.2
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 1.0e-21 107.5 154 35.7
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 1.3e-21 107.1 140 41.4
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 1.3e-21 107.1 139 42.4
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 1.3e-21 107.1 139 42.4
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 1.3e-21 107.1 128 40.6
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.3e-21 107.1 157 35.0
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 1.7e-21 106.7 139 42.4
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 1.7e-21 106.7 139 42.4
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 1.7e-21 106.7 154 39.0
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.7e-21 106.7 151 35.1
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 2.2e-21 106.3 132 37.9
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 2.9e-21 105.9 130 40.0
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 3.8e-21 105.5 145 40.7
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 3.8e-21 105.5 151 35.8
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 3.8e-21 105.5 152 35.5
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 6.5e-21 104.8 128 39.1
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 6.5e-21 104.8 128 39.8
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 6.5e-21 104.8 156 37.8
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 6.5e-21 104.8 156 37.2
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 6.5e-21 104.8 129 39.5
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 6.5e-21 104.8 133 38.3
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 6.5e-21 104.8 156 36.5
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 8.5e-21 104.4 128 39.1
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 1.4e-20 103.6 158 34.8
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 1.9e-20 103.2 158 37.3
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 2.5e-20 102.8 131 36.6
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 2.5e-20 102.8 151 37.1
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 4.2e-20 102.1 152 34.2
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 9.4e-20 100.9 151 36.4
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 9.4e-20 100.9 128 36.7
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 2.1e-19 99.8 112 47.3
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 1.8e-18 96.7 119 42.0
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 3.0e-18 95.9 121 39.7
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 3.0e-18 95.9 93 44.1
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 5.1e-18 95.1 135 37.8
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 8.8e-18 94.4 135 40.0
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 4.4e-17 92.0 157 35.0
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 9.7e-17 90.9 60 61.7
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 9.7e-17 90.9 143 35.0
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 4.1e-15 85.5 91 44.0
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 4.5e-14 82.0 90 45.6
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 3.8e-13 79.0 96 39.6
Glyma.15G116750 Glycine max HOM05D003663 ORTHO05D005327 5.0e-13 78.6 44 72.7
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 1.1e-12 77.4 90 42.2
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 3.2e-12 75.9 90 40.0
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 9.4e-12 74.3 94 38.3
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 3.3e-09 65.9 120 32.5
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 3.3e-09 65.9 120 32.5
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 3.3e-09 65.9 154 28.6
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 1.3e-08 63.9 131 32.1
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 2.8e-08 62.8 119 31.9
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 3.1e-07 59.3 123 29.3
SMO290G0002 Selaginella moellendorffii HOM05D005423 ORTHO05D006223 1.6e-06 57.0 96 32.3
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 5.9e-06 55.1 104 28.8


User provided reference genes

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