Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 5.8e-206 720.7 376 100.0
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 4.1e-159 565.1 377 80.9
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 1.7e-157 559.7 378 78.3
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 1.5e-156 556.6 378 78.6
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 4.2e-156 555.1 377 79.3
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 1.3e-152 543.5 351 79.8
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 3.7e-152 542.0 377 77.5
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 3.7e-144 515.4 376 72.9
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 1.1e-143 513.8 376 72.3
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 1.8e-143 513.1 376 72.9
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 2.9e-141 505.8 376 72.1
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 6.1e-139 498.0 377 72.7
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 4.0e-130 468.8 332 75.9
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 3.4e-113 412.5 372 62.9
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 2.2e-112 409.8 372 61.3
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 2.2e-112 409.8 372 61.3
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 8.4e-112 407.9 379 58.6
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 1.9e-111 406.8 380 59.5
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 1.9e-111 406.8 374 59.9
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.9e-111 406.8 374 59.9
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 4.2e-111 405.6 374 60.4
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 1.2e-110 404.1 296 74.7
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 2.1e-110 403.3 372 59.9
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 2.5e-108 396.4 373 59.2
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 5.6e-108 395.2 377 59.2
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 5.3e-106 388.7 371 59.0
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 9.0e-106 387.9 370 57.6
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.4e-105 386.0 391 55.8
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 4.4e-105 385.6 366 59.0
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 7.6e-105 384.8 386 55.4
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 9.9e-105 384.4 377 59.7
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 3.2e-103 379.4 370 57.3
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 3.2e-103 379.4 375 57.1
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.7e-101 373.6 371 55.8
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.3e-101 373.2 415 53.3
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.7e-101 371.3 371 55.5
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.9e-100 370.2 375 54.4
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.9e-100 370.2 373 55.5
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 1.9e-100 370.2 382 54.5
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 7.3e-100 368.2 374 55.6
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 9.6e-100 367.9 371 55.0
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.1e-99 366.7 373 55.0
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 6.9e-98 361.7 342 58.5
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.4e-97 359.4 380 55.3
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.9e-96 356.3 373 53.6
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 3.8e-96 355.9 370 54.9
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 2.1e-94 350.1 377 53.6
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 1.8e-93 347.1 323 60.4
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.8e-93 347.1 375 54.4
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.0e-93 346.3 368 52.2
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 8.7e-93 344.7 330 58.5
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 3.3e-92 342.8 378 50.3
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.6e-92 342.0 367 52.3
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 5.6e-92 342.0 379 50.9
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 9.6e-92 341.3 361 54.0
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 1.3e-91 340.9 378 51.1
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 3.7e-91 339.3 340 56.2
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 4.8e-91 339.0 380 50.5
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.8e-90 337.0 367 52.0
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 4.0e-90 335.9 377 52.5
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 6.9e-90 335.1 385 52.2
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 7.6e-89 331.6 384 50.5
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.9e-87 327.0 324 57.1
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 2.5e-87 326.6 374 49.2
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.1e-86 323.6 385 50.6
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 6.0e-86 322.0 368 53.0
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.0e-85 321.2 374 50.5
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.8e-85 320.5 361 49.0
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 1.5e-84 317.4 370 52.7
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 2.5e-84 316.6 370 50.8
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 5.7e-84 315.5 357 50.7
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.6e-83 313.9 372 48.7
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 2.1e-83 313.5 387 48.1
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 2.1e-83 313.5 372 48.4
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 6.3e-83 312.0 373 48.3
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 1.1e-82 311.2 372 47.8
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 3.1e-82 309.7 372 46.8
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 3.1e-82 309.7 372 47.3
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 2.0e-81 307.0 310 55.2
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.7e-80 303.9 367 50.7
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.2e-80 303.5 370 48.9
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 6.5e-80 302.0 378 47.4
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 8.4e-80 301.6 372 47.0
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 9.3e-79 298.1 378 46.0
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 9.3e-79 298.1 378 46.0
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 1.2e-78 297.7 371 48.2
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 1.2e-78 297.7 374 47.3
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 3.5e-78 296.2 376 46.5
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 3.5e-78 296.2 335 51.3
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 3.5e-78 296.2 371 48.0
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 6.1e-78 295.4 372 47.3
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 7.9e-78 295.0 382 47.1
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 2.3e-77 293.5 351 49.9
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 1.5e-76 290.8 372 45.7
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 2.5e-76 290.0 372 45.2
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 2.5e-76 290.0 372 45.2
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 3.3e-76 289.7 384 47.4
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 4.3e-76 289.3 372 46.0
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 9.7e-76 288.1 372 45.4
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 2.2e-75 287.0 355 46.8
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 2.2e-75 287.0 374 44.7
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 2.2e-75 287.0 372 45.7
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 2.2e-75 287.0 374 44.7
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 3.7e-75 286.2 377 47.7
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 1.4e-74 284.3 372 45.7
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 4.1e-74 282.7 371 46.6
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 1.5e-73 280.8 372 46.0
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 1.0e-72 278.1 311 50.2
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.3e-72 277.7 372 44.1
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 1.3e-72 277.7 358 45.5
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 2.2e-72 276.9 372 43.8
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 2.2e-72 276.9 372 43.8
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 2.9e-72 276.6 372 44.1
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 3.8e-72 276.2 371 43.9
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 2.5e-71 273.5 371 45.3
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 2.1e-70 270.4 393 44.5
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.3e-69 266.9 350 45.4
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 2.3e-69 266.9 370 44.6
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 3.9e-69 266.2 375 43.7
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.5e-68 264.2 331 48.9
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 2.4e-66 256.9 354 42.9
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 4.1e-66 256.1 335 45.1
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 9.1e-66 255.0 376 40.2
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.4e-65 253.1 382 39.5
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 9.4e-63 245.0 291 47.8
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 2.1e-62 243.8 329 45.3
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 1.9e-55 220.7 197 59.9
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 4.2e-55 219.5 283 45.9
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 4.2e-55 219.5 387 39.3
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 1.3e-48 198.0 333 39.6
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 2.6e-36 157.1 102 76.5
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 1.6e-33 147.9 405 31.1
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 9.5e-31 138.7 386 32.1
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.6e-30 136.7 137 49.6
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.2e-28 131.7 139 46.8
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 5.7e-28 129.4 131 61.1
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 2.2e-27 127.5 130 55.4
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 4.9e-27 126.3 265 35.5
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 8.3e-27 125.6 126 49.2
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.4e-26 124.8 131 48.1
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 8.6e-24 115.5 157 42.7
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.1e-23 115.2 202 37.6
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 1.5e-23 114.8 381 27.6
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.1e-22 110.9 357 28.6
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.8e-22 110.5 373 27.1
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 6.8e-21 105.9 64 84.4
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 5.6e-15 86.3 239 29.7
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 2.8e-14 84.0 103 48.5
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.6e-12 77.4 139 31.7
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 5.4e-10 69.7 82 37.8
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.2e-09 68.6 89 41.6
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.2e-09 68.6 89 41.6
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 6.0e-09 66.2 56 58.9
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 1.0e-08 65.5 56 57.1
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 3.0e-08 63.9 54 63.0
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 6.6e-08 62.8 57 57.9
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 1.1e-07 62.0 57 56.1
Oeu022108.1 Olea europaea HOM05D002428 ORTHO05D005085 2.1e-06 57.8 47 59.6
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 2.8e-06 57.4 110 38.2


User provided reference genes

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