Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0025549 Lotus japonicus HOM05D007621 ORTHO05D009631 0.0e+00 1383.2 671 100.0
Glyma.15G067500 Glycine max HOM05D007621 ORTHO05D009631 7.9e-246 854.0 712 63.2
VMungo0540G1980 Vigna mungo HOM05D007621 ORTHO05D009631 3.2e-239 832.0 714 60.9
Phvul.006G192200 Phaseolus vulgaris HOM05D007621 ORTHO05D009631 1.8e-210 736.5 713 56.9
TPR.G36840 Trifolium pratense HOM05D007621 ORTHO05D009631 4.5e-209 731.9 653 59.6
QL04p018250 Quercus lobata HOM05D007621 ORTHO05D009631 4.1e-202 708.8 645 57.4
Ca_00253_v3 Cicer arietinum L. HOM05D007621 ORTHO05D009631 1.9e-199 699.9 503 68.0
Haze_06574 Corylus avellana HOM05D007621 ORTHO05D009631 9.4e-199 697.6 688 54.5
Psat1g208720 Pisum sativum HOM05D007621 ORTHO05D009631 1.7e-195 686.8 502 68.5
GSVIVG01003190001 Vitis vinifera HOM05D007621 ORTHO05D009631 1.8e-194 683.3 710 54.1
arahy.Tifrunner.gnm1.ann1.M1GH8V Arachis hypogaea HOM05D007621 ORTHO05D009631 1.8e-189 666.8 656 55.2
CSS0049226 Camellia sinensis var. sinensis HOM05D007621 ORTHO05D009631 4.4e-188 662.1 699 53.5
Cfa000351 Carpinus fangiana HOM05D007621 ORTHO05D009631 2.8e-187 659.4 680 53.8
Manes.16G020600 Manihot esculenta HOM05D007621 ORTHO05D009631 6.3e-187 658.3 686 52.6
Rhsim02G0119600 Rhododendron simsii HOM05D007621 ORTHO05D009631 1.4e-186 657.1 693 52.8
TAR624G0533 Trochodendron aralioides HOM05D007621 ORTHO05D009631 3.1e-186 656.0 725 50.8
Dinv40478 Davidia involucrata HOM05D007621 ORTHO05D009631 1.7e-184 650.2 605 56.5
TWI38G0795 Tripterygium wilfordii HOM05D007621 ORTHO05D009631 5.6e-183 645.2 685 53.1
FAN11G2677 Fragaria x ananassa HOM05D007621 ORTHO05D009631 1.5e-180 637.1 647 54.9
Nn1g03894 Nelumbo nucifera HOM05D007621 ORTHO05D009631 5.8e-180 635.2 669 53.1
Actinidia11809 Actinidia chinensis HOM05D007621 ORTHO05D009631 1.3e-179 634.0 601 56.4
Prupe.4G036900 Prunus persica HOM05D007621 ORTHO05D009631 2.9e-179 632.9 684 53.1
RcHm_v2.0_Chr5g0006311 Rosa chinensis HOM05D007621 ORTHO05D009631 2.9e-179 632.9 692 51.4
FvH4_3g03980 Fragaria vesca HOM05D007621 ORTHO05D009631 3.7e-179 632.5 694 52.3
arahy.Tifrunner.gnm1.ann1.14L1JV Arachis hypogaea HOM05D007621 ORTHO05D009631 8.3e-179 631.3 656 53.2
ClCG03G005520 Citrullus lanatus HOM05D007621 ORTHO05D009631 3.2e-178 629.4 464 65.3
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 5.4e-178 628.6 498 62.7
Sed0011037 Sechium edule HOM05D007621 ORTHO05D009631 1.0e-176 624.4 435 67.8
Hma1.2p1_1182F.1_g264810 Hydrangea macrophylla HOM05D007621 ORTHO05D009631 5.0e-176 622.1 682 51.8
Ciclev10014484m.g Citrus clementina HOM05D007621 ORTHO05D009631 1.5e-175 620.5 704 50.1
CAN.G424.15 Capsicum annuum HOM05D007621 ORTHO05D009631 3.3e-175 619.4 688 51.7
ATR0693G363 Amborella trichopoda HOM05D007621 ORTHO05D009631 6.8e-173 611.7 648 51.7
MELO3C002556.2 Cucumis melo HOM05D007621 ORTHO05D009631 4.9e-171 605.5 424 68.2
SalBow7G3398 Salvia bowleyana HOM05D007621 ORTHO05D009631 6.4e-171 605.1 496 60.5
SalBow7G0238 Salvia bowleyana HOM05D007621 ORTHO05D009631 3.2e-170 602.8 496 60.3
CsaV3_1G011790 Cucumis sativus L. HOM05D007621 ORTHO05D009631 4.1e-170 602.4 424 67.5
MD05G1325500 Malus domestica HOM05D007621 ORTHO05D009631 1.7e-168 597.0 692 50.4
PGR042G2283 Punica granatum HOM05D007621 ORTHO05D009631 1.1e-167 594.3 692 49.6
Eucgr.E03798 Eucalyptus grandis HOM05D007621 ORTHO05D009631 3.3e-167 592.8 649 50.8
Cc02_g12430 Coffea canephora HOM05D007621 ORTHO05D009631 4.3e-167 592.4 415 65.3
Nitab4.5_0006573g0020 Nicotiana tabacum HOM05D007621 ORTHO05D009631 4.3e-167 592.4 643 52.3
Sc14g0001480 Simmondsia chinensis HOM05D007621 ORTHO05D009631 7.3e-167 591.7 578 56.1
Nitab4.5_0000190g0070 Nicotiana tabacum HOM05D007621 ORTHO05D009631 1.6e-166 590.5 637 50.4
CDE12G0841 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 3.1e-165 586.3 460 62.0
Peaxi162Scf00083g00022 Petunia axillaris HOM05D007621 ORTHO05D009631 5.2e-165 585.5 632 50.3
MSTRG.14678 Avicennia marina HOM05D007621 ORTHO05D009631 6.8e-165 585.1 663 48.7
PGSC0003DMG400022357 Solanum tuberosum HOM05D007621 ORTHO05D009631 1.2e-164 584.3 640 49.5
SGA_v2.0_scaffold49G18280 Striga asiatica HOM05D007621 ORTHO05D009631 1.5e-164 583.9 615 51.9
FAN16G2797 Fragaria x ananassa HOM05D007621 ORTHO05D009631 1.7e-163 580.5 693 50.2
Sopen02g023940 Solanum pennellii HOM05D007621 ORTHO05D009631 2.9e-163 579.7 607 51.4
Solyc02g079140.2 Solanum lycopersicum HOM05D007621 ORTHO05D009631 4.9e-163 578.9 610 51.1
ECA248G3190 Erigeron canadensis HOM05D007621 ORTHO05D009631 1.1e-162 577.8 400 66.5
AUR62014718 Chenopodium quinoa HOM05D007621 ORTHO05D009631 2.4e-162 576.6 485 60.0
Lj1C1213T4 Lonicera japonica HOM05D007621 ORTHO05D009631 7.1e-162 575.1 690 48.4
HPP92_005890 Vanilla planifolia HOM05D007621 ORTHO05D009631 1.6e-161 573.9 419 64.9
AUR62016897 Chenopodium quinoa HOM05D007621 ORTHO05D009631 3.0e-160 569.7 607 52.7
Os04g0636000 Oryza sativa ssp. japonica HOM05D007621 ORTHO05D009631 5.6e-159 565.5 449 61.9
Lsat_1_v5_gn_1_126820 Lactuca sativa HOM05D007621 ORTHO05D009631 3.6e-158 562.8 446 61.0
EL10Ac8g20530 Beta vulgaris HOM05D007621 ORTHO05D009631 3.1e-157 559.7 450 61.1
HanXRQChr11g0338441 Helianthus annuus HOM05D007621 ORTHO05D009631 5.2e-157 558.9 407 64.4
SEGI_29793 Sequoiadendron giganteum HOM05D007621 ORTHO05D009631 6.8e-157 558.5 444 60.6
Zm00001eb069260 Zea mays HOM05D007621 ORTHO05D009631 1.5e-156 557.4 541 54.9
CDE01G0329 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 1.7e-155 553.9 483 59.0
Mapoly0104s0019 Marchantia polymorpha HOM05D007621 ORTHO05D009631 7.6e-148 528.5 426 59.6
CDE01G0148 Ceratophyllum demersum HOM05D007621 ORTHO05D009631 3.2e-146 523.1 402 61.9
PGR042G3240 Punica granatum HOM05D007621 ORTHO05D009631 5.3e-141 505.8 484 55.4
Hund23606 Selenicereus undatus HOM05D007621 ORTHO05D009631 2.4e-138 496.9 366 66.7
Zm00001eb081180 Zea mays HOM05D007621 ORTHO05D009631 8.2e-126 455.3 410 55.9
Thecc.06G199600 Theobroma cacao HOM05D007621 ORTHO05D009631 9.3e-122 441.8 400 55.2
CBR_g725 Chara braunii HOM05D007621 ORTHO05D009631 3.9e-112 409.8 417 48.2
Aqoxy1G02733 Aquilegia oxysepala HOM05D007621 ORTHO05D009631 2.4e-109 400.6 287 67.6
Eucgr.E03700 Eucalyptus grandis HOM05D007621 ORTHO05D009631 2.7e-105 387.1 490 47.8
CiPaw.09G157900 Carya illinoinensis HOM05D007621 ORTHO05D009631 1.1e-103 381.7 481 49.1
Medtr2g011780 Medicago truncatula HOM05D007621 ORTHO05D009631 3.6e-97 360.1 281 64.8
Zm00001eb274720 Zea mays HOM05D007621 ORTHO05D009631 5.5e-90 336.3 248 66.5
FAN25G1179 Fragaria x ananassa HOM05D007621 ORTHO05D009631 3.1e-85 320.5 447 47.7
Oeu050825.1 Olea europaea HOM05D007621 ORTHO05D009631 5.7e-79 299.7 404 46.3
RcHm_v2.0_Chr7g0240451 Rosa chinensis HOM05D007621 ORTHO05D009631 2.8e-78 297.4 352 45.7
arahy.Tifrunner.gnm1.ann1.C857YU Arachis hypogaea HOM05D007621 ORTHO05D009631 4.5e-68 263.5 274 51.8
Psat1g210360 Pisum sativum HOM05D007621 ORTHO05D009631 1.2e-57 228.8 199 58.3
Glyma.13G246302 Glycine max HOM05D007621 ORTHO05D009631 2.0e-47 194.9 153 69.3
FvH4_6g02023 Fragaria vesca HOM05D007621 ORTHO05D009631 5.6e-42 176.8 130 64.6
Cre02.g116800 Chlamydomonas reinhardtii HOM05D007621 ORTHO05D009631 2.6e-31 141.4 488 25.8
Glyma.13G246400 Glycine max HOM05D007621 ORTHO05D009631 7.1e-29 133.3 179 49.7
Atru.chr10.2012 Acer truncatum HOM05D007621 ORTHO05D009631 3.0e-27 127.9 133 51.1
Potri.004G034301 Populus trichocarpa HOM05D007621 ORTHO05D009631 3.9e-27 127.5 78 70.5
Cpa.g.sc27.127 Carica papaya HOM05D007621 ORTHO05D009631 1.9e-26 125.2 323 34.4
SGA_v2.0_scaffold32G13107 Striga asiatica HOM05D007621 ORTHO05D009631 4.9e-22 110.5 126 49.2
AagrBONN_evm.TU.Sc2ySwM_340.408 Anthoceros agrestis HOM05D007621 ORTHO05D009631 2.4e-16 91.7 87 52.9
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 2.9e-14 84.7 195 34.4
SGA_v2.0_scaffold86G26914 Striga asiatica HOM05D007621 ORTHO05D009631 6.0e-12 77.0 57 61.4
Atru.chr10.2011 Acer truncatum HOM05D007621 ORTHO05D009631 1.8e-11 75.5 60 51.7
Sabra04G0020100 Salix brachista HOM05D007621 ORTHO05D009631 8.7e-11 73.2 165 29.7
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 3.3e-10 71.2 208 28.8
EL10Ac8g20531 Beta vulgaris HOM05D007621 ORTHO05D009631 1.4e-08 65.9 71 49.3
Lalb_Chr20g0122291 Lupinus albus HOM05D007621 ORTHO05D009631 7.6e-07 60.1 163 38.7
SGA_v2.0_scaffold26G11386 Striga asiatica HOM05D007621 ORTHO05D009631 8.4e-06 56.6 58 46.6


User provided reference genes

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