Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 5.6e-133 477.6 243 100.0
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 2.7e-103 379.0 244 78.3
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 1.1e-101 373.6 243 76.5
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 5.6e-101 371.3 243 76.5
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 4.9e-97 358.2 243 74.1
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 4.2e-96 355.1 243 75.3
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 1.2e-95 353.6 243 73.7
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 2.5e-93 345.9 243 72.0
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 1.4e-88 330.1 220 75.9
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 3.0e-78 295.8 243 64.6
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 6.9e-75 284.6 243 58.0
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 1.2e-71 273.9 245 55.5
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 1.9e-69 266.5 214 66.4
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 7.4e-69 264.6 245 54.3
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 2.8e-68 262.7 244 53.3
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 2.2e-65 253.1 243 52.7
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 2.2e-65 253.1 244 51.6
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 5.0e-65 251.9 242 56.6
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 5.0e-65 251.9 248 49.6
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 5.0e-65 251.9 243 52.7
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 6.5e-65 251.5 246 53.3
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 1.4e-64 250.4 244 50.8
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 2.5e-64 249.6 244 50.4
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 5.5e-64 248.4 245 51.8
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 5.5e-64 248.4 245 50.2
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 7.2e-64 248.1 243 52.3
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 7.2e-64 248.1 202 65.3
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 4.6e-63 245.4 248 48.0
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 7.9e-63 244.6 243 51.0
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 1.8e-62 243.4 245 51.0
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 3.0e-62 242.7 243 51.0
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 3.0e-62 242.7 243 50.2
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 2.5e-61 239.6 246 50.8
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 1.3e-60 237.3 244 52.5
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 2.2e-60 236.5 243 49.4
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 2.2e-60 236.5 243 51.4
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 2.8e-60 236.1 243 49.8
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 1.1e-59 234.2 243 49.0
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 2.4e-59 233.0 244 51.2
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 2.6e-58 229.6 244 48.8
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 7.7e-58 228.0 245 47.8
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 1.3e-57 227.3 245 50.2
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 8.5e-57 224.6 244 47.1
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 2.5e-56 223.0 244 47.5
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 3.2e-56 222.6 243 46.9
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 9.4e-56 221.1 244 47.5
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 1.6e-55 220.3 245 48.2
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 2.1e-55 219.9 244 47.5
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 2.7e-55 219.5 244 48.0
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 2.3e-54 216.5 244 44.7
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 3.9e-54 215.7 244 47.1
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 6.7e-54 214.9 244 46.7
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 8.8e-54 214.5 244 44.3
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 1.1e-53 214.2 244 43.4
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 1.1e-53 214.2 244 43.9
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 2.6e-53 213.0 293 38.9
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 4.4e-53 212.2 244 43.4
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 4.4e-53 212.2 246 45.5
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 1.3e-52 210.7 246 46.3
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 4.8e-52 208.8 244 45.5
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 4.8e-52 208.8 244 45.5
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 4.8e-52 208.8 246 45.5
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 1.1e-51 207.6 246 42.7
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 2.4e-51 206.5 244 42.2
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 3.1e-51 206.1 244 43.9
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 3.1e-51 206.1 244 43.9
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 4.1e-51 205.7 244 44.7
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 7.0e-51 204.9 228 46.5
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 2.2e-49 199.9 241 46.5
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 2.2e-49 199.9 244 45.9
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 2.9e-49 199.5 267 40.8
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 3.8e-49 199.1 190 56.3
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 1.9e-48 196.8 244 44.3
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 1.9e-48 196.8 244 44.7
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 2.7e-47 193.0 203 52.2
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 1.7e-44 183.7 198 49.5
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 8.2e-44 181.4 243 39.9
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 8.2e-44 181.4 243 38.7
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 1.4e-43 180.6 173 49.7
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 2.2e-41 173.3 198 46.0
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 2.1e-39 166.8 170 51.2
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 6.1e-39 165.2 243 39.5
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 6.1e-39 165.2 248 39.5
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 2.2e-36 156.8 249 39.4
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 1.2e-34 151.0 184 42.4
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 2.0e-34 150.2 252 36.9
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 3.5e-34 149.4 249 38.6
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 1.0e-33 147.9 243 36.6
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 1.3e-33 147.5 252 37.3
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 1.3e-33 147.5 244 36.5
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 2.2e-33 146.7 252 37.3
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 5.0e-33 145.6 252 36.9
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 2.0e-29 133.7 241 36.9
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 3.1e-27 126.3 175 42.3
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 2.0e-26 123.6 239 34.3
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 5.0e-25 119.0 222 32.4
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 1.1e-24 117.9 157 36.9
Peaxi162Scf00289g00310 Petunia axillaris HOM05D007471 ORTHO05D009481 1.0e-14 84.7 94 48.9
ClCG02G003080 Citrullus lanatus HOM05D007471 ORTHO05D009481 1.4e-14 84.3 78 52.6
FAN05G5088 Fragaria x ananassa HOM05D000100 ORTHO05D000052 3.5e-10 69.7 72 52.8
Lsat_1_v5_gn_3_93600 Lactuca sativa HOM05D007471 ORTHO05D233800 8.0e-07 58.5 86 37.2
MBI14_g37361_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 2.3e-06 57.0 44 54.5
Ah.10g032600 Amaranthus hybridus HOM05D007471 ORTHO05D009481 4.0e-06 56.2 104 36.5


User provided reference genes

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