Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1501.9 746 100.0
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1402.1 746 92.5
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1390.6 748 91.8
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1388.2 747 91.8
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1388.2 747 91.6
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1385.2 746 91.6
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1384.4 748 91.3
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1379.0 747 91.7
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1377.5 748 91.2
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1377.1 746 91.2
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1369.8 747 90.8
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1319.7 843 80.2
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1307.7 746 87.8
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1305.0 747 86.2
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1300.0 751 84.4
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1299.6 751 84.4
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1298.5 750 84.9
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1297.3 747 85.3
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1292.7 749 84.8
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1286.2 748 84.2
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1284.2 747 83.8
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1283.5 746 84.3
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1283.5 749 84.4
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1281.5 748 83.8
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1278.5 748 83.7
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1278.1 749 84.1
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1278.1 751 83.8
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1274.2 747 83.9
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1273.1 744 82.7
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1273.1 748 83.4
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1273.1 747 84.3
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1272.3 748 83.8
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1270.0 746 83.2
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1269.2 746 83.2
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1268.8 748 83.7
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1265.4 748 83.0
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1264.6 748 83.2
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1262.7 747 83.1
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1260.7 745 82.8
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1260.4 747 82.5
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1259.2 748 82.5
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1256.5 745 81.9
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1253.4 745 82.1
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1253.4 750 81.7
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1252.3 750 81.6
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 801 78.5
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 746 82.3
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1250.7 746 82.3
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1250.3 748 82.0
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1250.3 750 82.1
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1250.3 779 79.7
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1249.6 716 84.5
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1248.8 746 81.4
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1247.6 748 81.8
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1247.3 748 82.0
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1246.9 747 81.9
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1246.5 747 81.3
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1246.5 748 81.7
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1246.5 748 81.8
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1246.1 748 81.8
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1245.7 748 82.4
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1245.7 747 82.2
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1245.3 748 81.8
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 748 81.7
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 748 81.7
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1243.4 746 81.5
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1242.3 742 82.6
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1242.3 758 81.0
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1241.9 747 81.7
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1241.5 748 82.6
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1240.7 748 81.7
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1239.6 747 80.2
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1239.2 749 81.6
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1239.2 748 82.0
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1238.4 747 81.4
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1238.4 748 82.0
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1238.4 758 80.7
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1238.0 754 80.9
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1237.6 749 81.3
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1236.5 749 82.0
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1236.1 748 81.8
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1232.6 748 81.6
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1231.9 780 77.9
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1231.5 749 80.9
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1229.5 745 81.6
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1225.3 748 81.0
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1225.3 747 81.4
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1223.8 749 81.6
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1223.4 747 80.9
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1221.5 749 79.7
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1218.4 747 81.0
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1217.6 747 80.9
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1217.2 709 83.8
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1216.4 749 79.6
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1216.4 740 80.8
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1216.1 727 81.6
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1213.0 751 79.2
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1207.2 750 78.5
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1206.0 741 79.1
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1206.0 744 80.2
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1203.7 700 83.0
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1201.0 747 78.4
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1183.3 742 78.6
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1171.8 732 78.4
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1159.8 657 84.9
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1157.5 747 77.4
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1152.9 665 85.0
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1152.1 742 77.4
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1147.9 752 75.4
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1136.7 746 76.4
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1135.6 748 77.1
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1133.2 657 83.6
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1133.2 657 83.6
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1129.8 1055 57.8
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1120.9 657 84.2
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1106.7 732 74.3
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 1.0e-311 1073.2 749 74.0
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 8.6e-310 1066.6 624 84.3
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 7.6e-290 1000.3 677 70.2
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 2.7e-287 991.9 677 71.0
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.1e-284 982.2 677 70.3
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.1e-284 982.2 677 70.3
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.8e-283 979.2 677 70.0
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.1e-283 978.4 690 69.1
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 8.4e-281 970.3 678 68.1
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 4.8e-268 927.9 595 78.7
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 2.5e-264 915.6 595 78.2
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 1.5e-253 879.8 679 63.0
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 1.7e-228 796.6 682 57.5
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 2.3e-222 776.2 698 56.6
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 1.1e-211 740.7 675 61.5
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 9.1e-211 737.6 676 56.4
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 6.4e-196 688.3 754 48.3
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 3.5e-178 629.4 361 85.0
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 2.8e-175 619.8 733 45.7
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 6.0e-162 575.5 321 89.4
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 3.4e-157 559.7 305 87.5
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 1.1e-142 511.5 302 85.4
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 6.1e-138 495.7 301 82.4
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 4.1e-126 456.4 309 72.2
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.8e-121 441.0 294 72.4
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 8.0e-106 389.0 236 78.8
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 4.0e-97 360.1 241 74.7
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.8e-94 351.3 300 62.0
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.8e-92 343.6 300 60.0
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 5.0e-92 343.2 219 77.2
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 8.9e-89 332.4 223 75.3
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 2.6e-72 277.7 400 45.8
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 5.4e-70 270.0 172 73.3
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 1.4e-65 255.4 125 96.8
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 8.4e-63 246.1 174 70.1
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 3.2e-62 244.2 368 38.0
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 4.6e-61 240.4 260 51.9
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 1.6e-58 231.9 113 96.5
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 1.3e-50 205.7 140 78.6
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.3e-44 185.7 117 76.9
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 2.1e-42 178.3 102 80.4
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.6e-40 171.4 161 57.8
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 1.2e-37 162.5 122 68.0
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 6.7e-36 156.8 86 82.6
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 5.6e-35 153.7 142 56.3
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.3e-31 142.5 120 65.8
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 3.2e-30 137.9 83 81.9
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 6.0e-29 133.7 105 62.9
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 5.7e-27 127.1 142 52.8
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 8.2e-26 123.2 61 90.2
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.0e-23 116.3 140 54.3
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 1.0e-23 116.3 99 63.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 5.0e-23 114.0 220 30.5
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 2.2e-15 88.6 56 76.8
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 8.5e-15 86.7 49 77.6
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 2.0e-11 75.5 42 83.3
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 2.6e-11 75.1 42 88.1
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 3.7e-10 71.2 38 89.5
VMungo1383G3724 Vigna mungo HOM05D002744 ORTHO05D008989 7.7e-08 63.5 59 62.7
Psat2g105960 Pisum sativum HOM05D000610 ORTHO05D037361 5.0e-07 60.8 35 77.1
Phvul.001G229300 Phaseolus vulgaris HOM05D006674 ORTHO05D007954 1.1e-06 59.7 59 61.0


User provided reference genes

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