Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 7.3e-101 370.5 186 100.0
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 8.4e-97 357.1 186 96.2
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 2.4e-91 339.0 186 89.8
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 6.9e-91 337.4 186 88.7
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 9.0e-91 337.0 187 89.8
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 4.9e-89 331.3 186 87.1
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 8.4e-89 330.5 186 87.6
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 1.1e-88 330.1 192 85.9
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 3.2e-88 328.6 186 86.6
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 1.8e-86 322.8 186 87.1
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 8.7e-86 320.5 183 85.2
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 1.5e-85 319.7 186 85.5
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 4.9e-81 304.7 207 76.3
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 1.1e-80 303.5 185 81.1
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 8.7e-78 293.9 186 74.7
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 2.1e-76 289.3 186 77.4
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 6.2e-76 287.7 186 77.4
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 1.1e-75 287.0 186 74.7
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 5.3e-75 284.6 186 73.7
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 2.0e-74 282.7 186 75.3
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 1.0e-73 280.4 178 78.1
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 3.8e-73 278.5 186 71.5
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 6.5e-73 277.7 186 73.1
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 8.4e-73 277.3 186 71.0
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 8.4e-73 277.3 186 74.2
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 8.4e-73 277.3 186 70.4
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 8.4e-73 277.3 186 70.4
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 1.9e-72 276.2 186 69.9
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.9e-72 276.2 186 72.6
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.9e-72 276.2 186 72.6
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 1.9e-72 276.2 186 72.6
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 1.9e-72 276.2 187 73.3
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 7.1e-72 274.2 187 71.1
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 1.6e-71 273.1 187 69.5
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 2.1e-71 272.7 186 72.0
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 2.7e-71 272.3 185 70.3
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 3.5e-71 271.9 186 71.5
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 4.6e-71 271.6 186 72.0
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 7.9e-71 270.8 182 69.8
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.0e-70 268.9 186 69.4
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 3.0e-70 268.9 184 69.6
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 5.1e-70 268.1 186 67.2
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 5.1e-70 268.1 186 70.4
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 1.5e-69 266.5 187 69.0
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 1.9e-69 266.2 186 67.2
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.9e-69 266.2 186 67.7
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.9e-69 266.2 186 67.7
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 2.5e-69 265.8 186 67.2
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 5.7e-69 264.6 187 70.1
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 5.7e-69 264.6 186 66.7
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 9.7e-69 263.8 186 71.0
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 1.3e-68 263.5 186 67.2
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.6e-68 263.1 184 68.5
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 2.8e-68 262.3 186 66.7
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 2.8e-68 262.3 186 69.9
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 3.7e-68 261.9 186 68.3
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 3.7e-68 261.9 186 69.4
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 4.8e-68 261.5 183 68.3
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 6.3e-68 261.2 184 68.5
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 6.3e-68 261.2 184 68.5
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 1.1e-67 260.4 187 67.4
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.8e-67 259.6 187 66.3
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 3.1e-67 258.8 184 67.4
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 6.9e-67 257.7 181 68.0
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 6.9e-67 257.7 186 68.8
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 9.0e-67 257.3 184 66.3
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 1.5e-66 256.5 186 65.1
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.5e-66 256.5 171 71.3
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 4.5e-66 255.0 187 65.8
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 7.7e-66 254.2 187 65.8
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 1.7e-65 253.1 184 65.2
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 5.0e-65 251.5 185 66.5
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 1.9e-64 249.6 185 66.5
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 2.5e-64 249.2 183 65.6
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 4.2e-64 248.4 187 64.2
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 7.2e-64 247.7 187 65.8
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 7.2e-64 247.7 187 64.2
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 6.1e-63 244.6 182 65.4
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.8e-62 243.0 182 65.4
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 2.3e-62 242.7 183 65.0
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 8.8e-62 240.7 175 66.3
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 1.1e-61 240.4 187 64.2
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 1.5e-61 240.0 185 64.3
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 2.5e-61 239.2 182 63.2
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 7.4e-61 237.7 187 62.0
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 9.7e-61 237.3 182 64.3
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.7e-60 236.5 182 62.6
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.7e-60 236.5 187 62.0
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 2.2e-60 236.1 186 65.6
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 1.4e-59 233.4 166 68.1
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 6.9e-59 231.1 182 60.4
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 1.2e-58 230.3 185 62.7
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 3.4e-58 228.8 189 61.4
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 4.5e-58 228.4 187 59.9
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 5.9e-58 228.0 185 60.0
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 7.7e-58 227.6 182 60.4
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 1.0e-57 227.3 189 59.8
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 2.9e-57 225.7 189 61.4
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 3.8e-57 225.3 189 60.3
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 3.8e-57 225.3 189 60.3
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 6.5e-57 224.6 148 75.0
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 8.5e-57 224.2 185 58.4
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.4e-56 223.4 183 59.6
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 1.4e-56 223.4 189 59.8
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 4.2e-56 221.9 183 59.6
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 5.5e-56 221.5 183 59.0
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 2.7e-55 219.2 185 57.8
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 4.7e-55 218.4 149 67.8
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 9.7e-53 210.7 200 59.0
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 5.9e-50 201.4 183 56.3
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 1.3e-49 200.3 149 63.8
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.4e-48 196.8 205 52.2
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 5.5e-48 194.9 189 56.6
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 1.2e-47 193.7 185 49.7
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 4.7e-47 191.8 166 57.8
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 6.1e-47 191.4 183 50.8
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 3.0e-46 189.1 183 49.7
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 3.9e-46 188.7 168 58.3
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 6.7e-46 188.0 150 62.0
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 3.3e-45 185.7 182 48.9
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 9.7e-45 184.1 186 54.8
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.4e-43 180.3 149 59.7
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 5.3e-43 178.3 187 52.9
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 5.9e-42 174.9 161 58.4
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 6.5e-41 171.4 183 46.4
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.1e-40 170.6 112 68.8
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.1e-39 166.4 183 45.9
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 2.6e-37 159.5 187 39.6
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 4.1e-35 152.1 103 68.0
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 1.1e-27 127.5 158 44.3
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.7e-25 120.2 104 55.8
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 4.2e-24 115.5 117 51.3
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 1.0e-22 110.9 135 45.2
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 3.0e-22 109.4 98 59.2
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 2.8e-20 102.8 71 64.8
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 3.5e-18 95.9 83 63.9
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 2.3e-17 93.2 167 31.1
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 3.9e-17 92.4 62 72.6
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 4.7e-15 85.5 72 52.8
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.4e-11 73.9 174 27.6
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 1.9e-11 73.6 164 30.5
QL03p009034 Quercus lobata HOM05D000946 ORTHO05D006696 2.5e-08 63.2 37 75.7


User provided reference genes

Program Settings