Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0024251 Lotus japonicus HOM05D007852 ORTHO05D009916 1.5e-118 429.5 209 100.0
LjContig00141g0007313 Lotus japonicus HOM05D000003 ORTHO05D000004 3.3e-25 119.4 118 47.5
Glyma.13G225200 Glycine max HOM05D007852 ORTHO05D009916 1.1e-23 114.4 93 64.5
Lalb_Chr15g0086451 Lupinus albus HOM05D007852 ORTHO05D009916 6.9e-23 111.7 101 58.4
Lalb_Chr18g0054901 Lupinus albus HOM05D007852 ORTHO05D009916 1.9e-20 103.6 101 55.4
VMungo0540G1707 Vigna mungo HOM05D007852 ORTHO05D009916 1.6e-19 100.5 98 58.2
arahy.Tifrunner.gnm1.ann1.4JXB6U Arachis hypogaea HOM05D007852 ORTHO05D009916 2.3e-18 96.7 74 63.5
Glyma.08G120000 Glycine max HOM05D007852 ORTHO05D009916 2.1e-16 90.1 59 64.4
Psat7g067600 Pisum sativum HOM05D007852 ORTHO05D009916 2.8e-16 89.7 92 47.8
Phvul.006G171300 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 1.1e-15 87.8 89 55.1
Medtr8g087660 Medicago truncatula HOM05D007852 ORTHO05D009916 4.0e-15 85.9 45 80.0
MSTRG.16177 Avicennia marina HOM05D007852 ORTHO05D009916 6.9e-15 85.1 53 66.0
Glyma.05G162400 Glycine max HOM05D007852 ORTHO05D009916 5.8e-14 82.0 75 54.7
Gohir.D06G206100 Gossypium hirsutum HOM05D007852 ORTHO05D009916 1.3e-13 80.9 46 69.6
Gorai.010G240500 Gossypium raimondii HOM05D007852 ORTHO05D009916 1.3e-13 80.9 46 69.6
Hma1.2p1_1749F.1_g300710 Hydrangea macrophylla HOM05D007852 ORTHO05D009916 1.3e-13 80.9 45 75.6
Phvul.002G242100 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 1.7e-13 80.5 73 57.5
COL.COLO4_31211 Corchorus olitorius HOM05D007852 ORTHO05D009916 2.9e-13 79.7 45 71.1
Ciclev10018381m.g Citrus clementina HOM05D007852 ORTHO05D009916 3.8e-13 79.3 44 70.5
Gohir.A06G198800 Gossypium hirsutum HOM05D007852 ORTHO05D009916 3.8e-13 79.3 46 69.6
Potri.004G062700 Populus trichocarpa HOM05D007852 ORTHO05D009916 2.5e-12 76.6 46 65.2
SGA_v2.0_scaffold1G00101 Striga asiatica HOM05D007852 ORTHO05D009916 4.2e-12 75.9 46 63.0
Thecc.06G163700 Theobroma cacao HOM05D007852 ORTHO05D009916 5.5e-12 75.5 45 64.4
Ciclev10002903m.g Citrus clementina HOM05D007852 ORTHO05D009916 7.1e-12 75.1 44 65.9
QL05p050225 Quercus lobata HOM05D007852 ORTHO05D009916 7.1e-12 75.1 88 45.5
TWI09G0702 Tripterygium wilfordii HOM05D007852 ORTHO05D009916 9.3e-12 74.7 60 53.3
RcHm_v2.0_Chr5g0011991 Rosa chinensis HOM05D007852 ORTHO05D009916 1.2e-11 74.3 83 49.4
Ciclev10006937m.g Citrus clementina HOM05D007852 ORTHO05D009916 3.5e-11 72.8 44 68.2
TAR626G0530 Trochodendron aralioides HOM05D007852 ORTHO05D009916 3.5e-11 72.8 45 60.0
Duzib235G0245 Durio zibethinus HOM05D007852 ORTHO05D009916 4.6e-11 72.4 99 44.4
Sed0006029 Sechium edule HOM05D007852 ORTHO05D009916 6.1e-11 72.0 45 66.7
Sabra04G0041600 Salix brachista HOM05D007852 ORTHO05D009916 7.9e-11 71.6 85 42.4
Oeu001067.1 Olea europaea HOM05D007852 ORTHO05D009916 1.0e-10 71.2 48 58.3
Atru.chr10.1525 Acer truncatum HOM05D007852 ORTHO05D009916 1.3e-10 70.9 52 59.6
FAN21G2050 Fragaria x ananassa HOM05D007852 ORTHO05D009916 1.3e-10 70.9 56 51.8
Manes.16G043700 Manihot esculenta HOM05D007852 ORTHO05D009916 1.3e-10 70.9 70 48.6
AUR62039495 Chenopodium quinoa HOM05D007852 ORTHO05D009916 1.8e-10 70.5 45 57.8
Carub.0001s2803 Capsella rubella HOM05D007852 ORTHO05D009916 2.3e-10 70.1 62 50.0
MELO3C002684.2 Cucumis melo HOM05D007852 ORTHO05D009916 3.0e-10 69.7 58 53.4
Nn3g21053 Nelumbo nucifera HOM05D007852 ORTHO05D009916 3.0e-10 69.7 45 60.0
GSVIVG01021272001 Vitis vinifera HOM05D007852 ORTHO05D009916 3.9e-10 69.3 82 45.1
ClCG03G007370 Citrullus lanatus HOM05D007852 ORTHO05D009916 5.1e-10 68.9 45 62.2
MELO3C017616.2 Cucumis melo HOM05D007852 ORTHO05D009916 8.7e-10 68.2 58 53.4
Migut.M00995 Erythranthe guttata HOM05D007852 ORTHO05D009916 1.1e-09 67.8 47 55.3
ATR0820G245 Amborella trichopoda HOM05D007852 ORTHO05D009916 1.9e-09 67.0 89 36.0
AUR62041804 Chenopodium quinoa HOM05D007852 ORTHO05D009916 1.9e-09 67.0 45 55.6
FAN16G0821 Fragaria x ananassa HOM05D007852 ORTHO05D009916 1.9e-09 67.0 56 50.0
BcaC05g26993 Brassica carinata HOM05D007852 ORTHO05D009916 2.5e-09 66.6 62 48.4
C05p28530 Brassica napus HOM05D007852 ORTHO05D009916 2.5e-09 66.6 62 48.4
BolC5t31577H Brassica oleracea HOM05D007852 ORTHO05D009916 2.5e-09 66.6 62 48.4
Hund21452 Selenicereus undatus HOM05D007852 ORTHO05D009916 3.3e-09 66.2 44 61.4
BcaB03g12179 Brassica carinata HOM05D007852 ORTHO05D009916 4.3e-09 65.9 62 48.4
BcaC06g35465 Brassica carinata HOM05D007852 ORTHO05D009916 5.7e-09 65.5 87 40.2
Os01g0729500 Oryza sativa ssp. japonica HOM05D007852 ORTHO05D009916 5.7e-09 65.5 62 46.8
Sp1g25680 Schrenkiella parvula HOM05D007852 ORTHO05D009916 5.7e-09 65.5 55 50.9
Dinv12735 Davidia involucrata HOM05D007852 ORTHO05D009916 7.4e-09 65.1 42 66.7
Prupe.4G068400 Prunus persica HOM05D007852 ORTHO05D009916 7.4e-09 65.1 45 57.8
TPR.G20480 Trifolium pratense HOM05D007852 ORTHO05D009916 9.7e-09 64.7 71 45.1
Zm00001eb094410 Zea mays HOM05D007852 ORTHO05D009916 9.7e-09 64.7 68 48.5
DCAR_003974 Daucus carota HOM05D007852 ORTHO05D009916 1.3e-08 64.3 45 60.0
CARHR029160 Cardamine hirsuta HOM05D007852 ORTHO05D009916 2.2e-08 63.5 62 46.8
Sc05g0006790 Simmondsia chinensis HOM05D007852 ORTHO05D009916 2.2e-08 63.5 45 53.3
AL1G43620 Arabidopsis lyrata HOM05D007852 ORTHO05D009916 2.8e-08 63.2 90 38.9
BcaC01g00138 Brassica carinata HOM05D007852 ORTHO05D009916 2.8e-08 63.2 62 45.2
A07p10220 Brassica napus HOM05D007852 ORTHO05D009916 2.8e-08 63.2 47 55.3
A08p24840 Brassica napus HOM05D007852 ORTHO05D009916 2.8e-08 63.2 44 59.1
BraA07t28818Z Brassica rapa HOM05D007852 ORTHO05D009916 2.8e-08 63.2 44 59.1
BraA08t34439Z Brassica rapa HOM05D007852 ORTHO05D009916 2.8e-08 63.2 44 59.1
Lsat_1_v5_gn_4_49360 Lactuca sativa HOM05D007852 ORTHO05D009916 2.8e-08 63.2 75 42.7
C07p15740 Brassica napus HOM05D007852 ORTHO05D009916 3.7e-08 62.8 85 40.0
BolC3t19875H Brassica oleracea HOM05D007852 ORTHO05D009916 3.7e-08 62.8 66 43.9
BolC7t42066H Brassica oleracea HOM05D007852 ORTHO05D009916 3.7e-08 62.8 85 40.0
CiPaw.09G136400 Carya illinoinensis HOM05D007852 ORTHO05D009916 3.7e-08 62.8 46 56.5
PGSC0003DMG400028458 Solanum tuberosum HOM05D007852 ORTHO05D009916 3.7e-08 62.8 67 41.8
Actinidia39528 Actinidia chinensis HOM05D007852 ORTHO05D009916 4.8e-08 62.4 43 62.8
Ah.14g086910 Amaranthus hybridus HOM05D000275 ORTHO05D009916 6.3e-08 62.0 55 56.4
Solyc02g071940.1 Solanum lycopersicum HOM05D007852 ORTHO05D009916 6.3e-08 62.0 67 41.8
Sopen02g020930 Solanum pennellii HOM05D007852 ORTHO05D009916 8.2e-08 61.6 67 41.8
C03p76190 Brassica napus HOM05D007852 ORTHO05D009916 1.1e-07 61.2 66 42.4
Thhalv10009162m.g Eutrema salsugineum HOM05D007852 ORTHO05D009916 3.1e-07 59.7 42 57.1
EL10Ac2g03044 Beta vulgaris HOM05D000003 ORTHO05D000006 5.3e-07 58.9 110 36.4
EL10Ac8g19876 Beta vulgaris HOM05D007852 ORTHO05D009916 5.3e-07 58.9 42 59.5
Nitab4.5_0008572g0040 Nicotiana tabacum HOM05D007852 ORTHO05D009916 5.3e-07 58.9 59 45.8


User provided reference genes

Program Settings