Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 8.4e-80 300.4 168 100.0
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 1.5e-44 183.3 141 69.5
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 1.7e-43 179.9 128 73.4
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 4.8e-43 178.3 156 65.4
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 1.8e-42 176.4 136 74.3
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 3.1e-42 175.6 163 68.7
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 5.3e-42 174.9 164 65.2
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 5.9e-41 171.4 149 73.2
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 1.7e-40 169.9 114 71.1
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 2.9e-40 169.1 148 59.5
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 5.0e-40 168.3 141 75.9
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 6.5e-40 167.9 144 57.6
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 8.5e-40 167.5 143 58.0
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 2.5e-39 166.0 165 55.2
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 7.2e-39 164.5 126 65.1
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 9.4e-39 164.1 155 56.8
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.2e-38 163.7 114 67.5
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 2.1e-38 162.9 114 72.8
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 4.7e-38 161.8 142 64.8
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.3e-37 159.5 139 56.1
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 6.7e-37 157.9 119 67.2
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 6.7e-37 157.9 114 71.9
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.5e-36 156.8 103 71.8
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.5e-36 156.8 103 71.8
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.6e-36 156.0 102 69.6
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 4.4e-36 155.2 83 84.3
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 9.7e-36 154.1 120 65.8
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 1.3e-35 153.7 114 66.7
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 1.3e-35 153.7 114 62.3
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 1.3e-35 153.7 98 75.5
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.7e-35 153.3 125 60.0
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.8e-35 152.5 121 63.6
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 8.2e-35 151.0 96 72.9
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.1e-34 150.6 114 64.9
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.4e-34 150.2 146 54.1
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 2.4e-34 149.4 157 61.8
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 2.4e-34 149.4 98 76.5
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 3.1e-34 149.1 117 59.8
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 5.3e-34 148.3 148 53.4
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 7.0e-34 147.9 87 77.0
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 9.1e-34 147.5 96 71.9
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 1.2e-33 147.1 105 73.3
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 1.6e-33 146.7 91 74.7
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 2.0e-33 146.4 125 59.2
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 2.7e-33 146.0 116 61.2
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.7e-32 143.3 149 50.3
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.7e-32 143.3 149 50.3
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 1.7e-32 143.3 115 63.5
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.2e-32 142.9 169 50.9
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 3.8e-32 142.1 123 58.5
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.8e-32 142.1 110 64.5
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 5.0e-32 141.7 115 55.7
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 6.5e-32 141.4 114 64.9
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 1.5e-31 140.2 165 48.5
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.9e-31 139.8 110 62.7
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 1.9e-31 139.8 116 56.9
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 3.2e-31 139.0 87 70.1
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 5.5e-31 138.3 105 64.8
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 5.5e-31 138.3 115 55.7
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 5.5e-31 138.3 115 55.7
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 7.2e-31 137.9 84 75.0
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 7.2e-31 137.9 114 62.3
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 9.4e-31 137.5 115 55.7
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 9.4e-31 137.5 131 59.5
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 1.2e-30 137.1 115 62.6
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.2e-30 137.1 85 74.1
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.2e-30 137.1 104 65.4
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.6e-30 136.7 85 72.9
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 3.6e-30 135.6 110 58.2
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 8.0e-30 134.4 108 60.2
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.0e-29 134.0 97 66.0
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 1.0e-29 134.0 128 50.8
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.0e-29 134.0 126 54.8
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.3e-29 132.9 122 54.9
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 4.0e-29 132.1 114 57.9
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 4.0e-29 132.1 147 51.7
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 5.2e-29 131.7 149 59.7
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 6.8e-29 131.3 92 68.5
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.2e-28 130.6 131 52.7
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 1.2e-28 130.6 101 58.4
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 1.5e-28 130.2 92 69.6
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 2.6e-28 129.4 93 68.8
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 3.4e-28 129.0 110 56.4
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 4.4e-28 128.6 110 56.4
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 5.7e-28 128.3 110 57.3
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 5.7e-28 128.3 93 67.7
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 9.8e-28 127.5 86 65.1
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 1.3e-27 127.1 124 51.6
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 1.3e-27 127.1 124 51.6
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 1.7e-27 126.7 116 53.4
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 1.7e-27 126.7 116 53.4
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.7e-27 126.7 108 61.1
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.7e-27 126.7 85 71.8
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 2.2e-27 126.3 153 49.0
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 8.3e-27 124.4 117 51.3
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.4e-26 123.6 96 61.5
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.8e-26 123.2 86 62.8
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 5.4e-26 121.7 157 43.9
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 1.7e-24 116.7 84 69.0
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.1e-23 114.0 95 62.1
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 1.1e-23 114.0 95 62.1
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 4.2e-23 112.1 95 57.9
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 7.2e-23 111.3 76 73.7
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 3.6e-22 109.0 65 75.4
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 6.1e-22 108.2 90 56.7
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 6.1e-22 108.2 80 58.8
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 1.8e-21 106.7 125 61.6
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 6.8e-21 104.8 108 50.9
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 2.0e-20 103.2 70 67.1
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 2.0e-20 103.2 93 57.0
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 2.6e-20 102.8 145 42.1
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 4.4e-20 102.1 68 76.5
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 4.4e-20 102.1 80 65.0
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.3e-19 100.5 87 57.5
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.7e-19 100.1 77 63.6
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.1e-18 97.4 93 52.7
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.8e-18 96.7 82 57.3
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 1.8e-18 96.7 141 37.6
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 2.4e-18 96.3 62 69.4
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 4.1e-18 95.5 90 52.2
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 5.4e-18 95.1 85 48.2
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 5.4e-18 95.1 104 44.2
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 1.6e-17 93.6 95 51.6
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.5e-17 92.0 59 74.6
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 5.9e-17 91.7 105 49.5
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.3e-16 90.5 94 46.8
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 1.7e-16 90.1 83 56.6
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 2.3e-16 89.7 81 50.6
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 2.9e-16 89.4 100 49.0
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 3.8e-16 89.0 105 49.5
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.0e-16 88.6 57 73.7
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 8.6e-16 87.8 106 49.1
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 1.9e-15 86.7 76 60.5
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 2.5e-15 86.3 95 45.3
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 3.3e-15 85.9 83 56.6
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 5.6e-15 85.1 67 64.2
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 7.3e-15 84.7 55 76.4
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 1.2e-14 84.0 142 40.1
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.6e-14 83.6 77 54.5
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 6.1e-14 81.6 125 43.2
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 8.0e-14 81.3 67 61.2
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.3e-13 79.7 73 60.3
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 5.2e-13 78.6 74 58.1
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 8.9e-13 77.8 50 66.0
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 1.2e-12 77.4 80 53.8
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 5.7e-12 75.1 55 65.5
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 5.7e-12 75.1 87 49.4
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 7.5e-12 74.7 59 64.4
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 6.4e-11 71.6 70 61.4
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 6.4e-11 71.6 123 40.7
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.4e-10 70.5 92 38.0
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 1.4e-10 70.5 120 38.3
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.2e-09 67.4 69 44.9
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 3.5e-09 65.9 50 64.0
ATR0626G331 Amborella trichopoda HOM05D002369 ORTHO05D002435 1.9e-07 60.1 71 46.5
Mapoly0073s0064 Marchantia polymorpha HOM05D002369 ORTHO05D002435 5.6e-07 58.5 93 38.7
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 7.3e-07 58.2 49 61.2
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 7.3e-07 58.2 39 71.8
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 7.3e-07 58.2 57 54.4
Thhalv10021823m.g Eutrema salsugineum HOM05D002369 ORTHO05D002435 9.5e-07 57.8 55 52.7
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.2e-06 57.4 37 73.0
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 1.2e-06 57.4 43 65.1
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.6e-06 57.0 37 73.0
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.6e-06 57.0 37 70.3
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.8e-06 56.2 47 63.8
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 3.6e-06 55.8 38 68.4
MELO3C006489.2 Cucumis melo HOM05D002369 ORTHO05D002435 4.7e-06 55.5 70 44.3
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 4.7e-06 55.5 42 64.3
CsaV3_3G012780 Cucumis sativus L. HOM05D002369 ORTHO05D002435 6.2e-06 55.1 70 42.9
Ah.09g229300 Amaranthus hybridus HOM05D003803 ORTHO05D004456 8.0e-06 54.7 30 70.0
AagrBONN_evm.TU.Sc2ySwM_362.2112 Anthoceros agrestis HOM05D002369 ORTHO05D002435 8.0e-06 54.7 68 36.8
Hund20657 Selenicereus undatus HOM05D002369 ORTHO05D002435 8.0e-06 54.7 55 50.9


User provided reference genes

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