Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 2.9e-302 1041.2 558 100.0
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 6.6e-238 827.4 563 79.8
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 5.8e-234 814.3 573 77.3
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 1.3e-233 813.1 572 77.1
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 6.4e-233 810.8 562 77.9
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 4.3e-229 798.1 556 78.1
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 1.4e-227 793.1 562 76.7
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 3.4e-226 788.5 562 76.7
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 1.3e-225 786.6 556 76.3
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 5.1e-222 774.6 572 74.0
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 1.4e-219 766.5 563 74.6
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 6.6e-206 721.1 561 71.1
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 3.9e-198 695.3 559 67.4
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 4.0e-195 685.3 562 66.9
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 3.4e-194 682.2 557 67.7
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 4.9e-193 678.3 560 67.0
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 2.1e-191 672.9 566 67.0
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 3.3e-189 665.6 568 65.1
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 6.2e-188 661.4 571 65.8
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 2.4e-187 659.4 553 64.7
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 5.3e-187 658.3 556 65.8
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 1.5e-186 656.8 568 64.1
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 2.9e-185 652.5 550 64.4
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 3.8e-185 652.1 568 63.9
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 8.4e-185 651.0 558 64.5
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.4e-184 650.2 566 63.4
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 3.2e-184 649.0 574 60.8
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 4.2e-184 648.7 579 63.7
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 4.2e-184 648.7 561 62.9
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 4.2e-184 648.7 560 62.1
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 4.2e-184 648.7 568 63.0
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 1.6e-183 646.7 558 64.2
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 1.0e-182 644.0 559 64.6
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 3.9e-182 642.1 559 63.7
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 5.1e-182 641.7 567 63.3
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 2.5e-181 639.4 552 63.9
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 4.3e-181 638.6 576 62.5
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 4.8e-180 635.2 562 62.3
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 4.0e-179 632.1 573 62.3
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 5.3e-179 631.7 570 62.3
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 6.9e-179 631.3 562 61.4
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 9.0e-179 630.9 566 62.5
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 1.5e-178 630.2 564 61.5
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 4.5e-178 628.6 558 60.6
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 7.6e-178 627.9 561 61.3
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 2.2e-177 626.3 560 61.1
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 9.3e-176 620.9 569 61.2
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.1e-175 618.2 577 59.4
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.3e-174 617.1 561 60.4
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 1.8e-174 616.7 573 59.7
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 3.9e-174 615.5 571 61.1
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 8.7e-174 614.4 558 60.4
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 2.5e-173 612.8 561 61.3
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.5e-173 612.8 577 59.3
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.5e-173 612.8 577 59.1
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 1.4e-171 607.1 571 59.4
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 2.6e-170 602.8 676 54.1
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 4.5e-170 602.1 569 59.8
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 6.5e-169 598.2 578 60.4
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 8.5e-169 597.8 568 59.2
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 1.1e-168 597.4 547 59.8
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.1e-168 597.4 568 59.2
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 2.5e-168 596.3 561 59.9
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 3.2e-168 595.9 546 58.8
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 2.7e-167 592.8 553 60.4
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.3e-166 589.7 563 58.3
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 5.1e-166 588.6 555 57.8
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 8.8e-166 587.8 559 57.6
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 4.8e-164 582.0 552 57.2
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 1.4e-163 580.5 557 59.1
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 1.8e-163 580.1 570 56.1
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.8e-163 580.1 565 57.3
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 2.4e-163 579.7 558 58.1
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 3.1e-163 579.3 557 58.7
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 4.1e-163 578.9 557 58.9
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 6.9e-163 578.2 565 57.2
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 1.0e-161 574.3 558 56.3
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 1.7e-161 573.5 585 55.6
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 8.5e-161 571.2 575 56.0
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 5.5e-160 568.5 559 57.4
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 2.1e-159 566.6 583 56.1
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 1.4e-158 563.9 581 55.6
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 1.8e-158 563.5 569 54.7
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 6.7e-158 561.6 566 54.4
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 1.1e-157 560.8 564 55.0
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 2.0e-157 560.1 557 56.9
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.0e-157 560.1 583 53.3
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 2.0e-157 560.1 556 58.5
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 3.3e-157 559.3 563 54.9
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 4.4e-157 558.9 563 54.9
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 1.3e-156 557.4 577 54.2
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 1.3e-156 557.4 567 57.1
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 2.2e-156 556.6 576 54.2
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 1.1e-155 554.3 555 55.7
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 1.8e-155 553.5 580 53.6
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 5.3e-155 552.0 553 57.5
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 9.1e-155 551.2 574 53.3
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 4.5e-154 548.9 562 57.3
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 2.0e-146 523.5 573 53.4
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 1.2e-143 514.2 561 56.3
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 9.1e-139 498.0 422 64.0
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 1.6e-135 487.3 417 64.7
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 1.0e-134 484.6 549 51.9
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 6.8e-134 481.9 449 57.9
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 2.2e-132 476.9 435 60.2
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 1.9e-128 463.8 557 52.1
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 3.4e-125 453.0 566 48.6
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.9e-124 449.9 502 53.0
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.9e-122 442.2 528 50.8
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 4.3e-120 436.0 301 74.1
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 5.8e-117 425.6 563 46.7
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 8.3e-116 421.8 557 45.4
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 1.4e-115 421.0 556 46.0
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 2.7e-114 416.8 367 62.9
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 4.7e-111 406.0 281 71.9
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 1.3e-108 397.9 559 44.4
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 4.6e-106 389.4 556 47.3
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 1.5e-104 384.4 549 42.6
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 4.3e-104 382.9 589 46.9
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 4.9e-100 369.4 391 51.9
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 3.2e-83 313.5 465 42.8
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.4e-75 288.1 310 53.9
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 3.7e-71 273.5 344 51.7
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 6.3e-63 246.1 225 57.3
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 8.2e-63 245.7 238 57.6
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 1.3e-60 238.4 403 37.0
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 5.5e-59 233.0 493 35.9
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 6.1e-58 229.6 157 72.6
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 4.5e-53 213.4 177 62.7
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 7.9e-50 202.6 141 75.2
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 2.2e-44 184.5 138 67.4
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 6.1e-42 176.4 315 39.7
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 6.3e-39 166.4 138 61.6
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 7.7e-37 159.5 118 68.6
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 8.5e-36 156.0 118 66.9
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 2.3e-33 147.9 143 51.7
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 2.8e-23 114.4 84 67.9
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-22 110.9 172 40.7
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 2.7e-21 107.8 288 34.7
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 1.5e-19 102.1 84 60.7
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 2.0e-16 91.7 181 38.1
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 6.3e-15 86.7 60 66.7
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 5.0e-12 77.0 67 61.2
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 1.6e-10 72.0 42 76.2
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.0e-09 69.3 46 73.9
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 4.0e-09 67.4 48 70.8
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 2.0e-08 65.1 153 35.3
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 9.8e-08 62.8 187 37.4
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 4.9e-07 60.5 36 75.0
Thecc.08G193600 Theobroma cacao HOM05D004469 ORTHO05D005429 4.9e-07 60.5 49 59.2
HanXRQChr01g0025721 Helianthus annuus HOM05D004469 ORTHO05D005429 2.4e-06 58.2 52 53.8
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 3.2e-06 57.8 52 57.7
arahy.Tifrunner.gnm1.ann1.770ATG Arachis hypogaea HOM05D004469 ORTHO05D005429 4.1e-06 57.4 44 65.9
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 4.1e-06 57.4 41 63.4
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 5.4e-06 57.0 167 29.9
arahy.Tifrunner.gnm1.ann1.RZAJ21 Arachis hypogaea HOM05D004469 ORTHO05D005429 7.0e-06 56.6 41 65.9


User provided reference genes

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