Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 2.5e-110 402.1 201 100.0
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 1.2e-85 320.1 202 78.7
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 5.8e-43 178.3 121 71.1
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 4.9e-42 175.3 123 69.1
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 1.1e-41 174.1 121 70.2
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 2.4e-41 172.9 123 67.5
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 3.2e-41 172.6 121 70.2
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 5.4e-41 171.8 121 69.4
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 9.2e-41 171.0 122 68.0
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 9.2e-41 171.0 119 67.2
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 1.2e-40 170.6 119 68.9
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 1.6e-40 170.2 121 68.6
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 2.7e-40 169.5 121 68.6
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 2.7e-40 169.5 121 69.4
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 3.5e-40 169.1 126 65.9
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 4.6e-40 168.7 123 64.2
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 6.0e-40 168.3 120 69.2
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 7.8e-40 167.9 118 67.8
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 7.8e-40 167.9 139 59.7
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 1.0e-39 167.5 119 66.4
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.0e-39 167.5 119 66.4
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 1.3e-39 167.2 121 67.8
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 1.7e-39 166.8 126 65.9
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 1.7e-39 166.8 121 66.9
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 2.3e-39 166.4 119 66.4
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 3.0e-39 166.0 122 63.1
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 3.0e-39 166.0 124 66.9
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 3.9e-39 165.6 121 65.3
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 3.9e-39 165.6 117 67.5
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 5.1e-39 165.2 125 64.0
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 5.1e-39 165.2 122 64.8
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 5.1e-39 165.2 121 65.3
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 6.6e-39 164.9 121 64.5
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 6.6e-39 164.9 118 68.6
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 1.1e-38 164.1 124 63.7
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 1.1e-38 164.1 119 65.5
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 1.5e-38 163.7 119 65.5
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.5e-38 163.7 119 65.5
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.5e-38 163.7 119 65.5
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 2.5e-38 162.9 123 66.7
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 2.5e-38 162.9 119 62.2
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.3e-38 162.5 119 65.5
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 3.3e-38 162.5 121 64.5
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 3.3e-38 162.5 121 64.5
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 4.3e-38 162.2 121 64.5
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 4.3e-38 162.2 121 62.8
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 5.6e-38 161.8 119 63.9
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 5.6e-38 161.8 118 65.3
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 5.6e-38 161.8 119 65.5
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 7.3e-38 161.4 120 62.5
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 9.5e-38 161.0 119 63.9
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 9.5e-38 161.0 119 65.5
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 9.5e-38 161.0 124 62.9
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 9.5e-38 161.0 123 64.2
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 9.5e-38 161.0 122 62.3
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.2e-37 160.6 134 59.7
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.2e-37 160.6 119 64.7
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.2e-37 160.6 118 64.4
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.2e-37 160.6 139 56.8
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.6e-37 160.2 126 63.5
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 1.6e-37 160.2 119 65.5
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 1.6e-37 160.2 119 65.5
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.6e-37 160.2 119 62.2
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 2.1e-37 159.8 126 61.1
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.8e-37 159.5 118 65.3
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.8e-37 159.5 125 61.6
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 3.6e-37 159.1 119 66.4
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 3.6e-37 159.1 119 60.5
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 4.7e-37 158.7 118 62.7
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 6.2e-37 158.3 122 60.7
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 8.1e-37 157.9 119 61.3
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.1e-36 157.5 119 64.7
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.1e-36 157.5 119 64.7
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.4e-36 157.1 118 62.7
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 1.4e-36 157.1 119 62.2
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 1.8e-36 156.8 122 61.5
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.8e-36 156.8 118 62.7
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 2.3e-36 156.4 119 62.2
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 2.3e-36 156.4 119 65.5
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 2.3e-36 156.4 125 60.8
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 4.0e-36 155.6 119 64.7
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 1.2e-35 154.1 122 60.7
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.2e-35 154.1 118 61.9
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.5e-35 153.7 119 63.0
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 1.5e-35 153.7 119 59.7
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.6e-35 152.9 141 53.2
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 4.4e-35 152.1 118 59.3
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 5.8e-35 151.8 121 57.9
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 7.5e-35 151.4 122 58.2
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 7.5e-35 151.4 117 62.4
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 7.5e-35 151.4 138 51.4
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 7.5e-35 151.4 119 59.7
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 9.9e-35 151.0 116 60.3
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 9.9e-35 151.0 118 62.7
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.3e-34 150.6 120 57.5
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.7e-34 149.1 118 61.0
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 3.7e-34 149.1 118 58.5
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.9e-34 148.7 137 55.5
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.1e-33 147.5 123 56.1
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.4e-33 147.1 118 61.0
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 2.4e-33 146.4 126 54.0
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 5.4e-33 145.2 118 55.1
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 5.4e-33 145.2 118 57.6
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.2e-32 144.1 136 47.8
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 1.6e-32 143.7 128 53.9
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.6e-32 143.7 116 57.8
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.6e-32 143.7 119 59.7
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 2.1e-32 143.3 121 54.5
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.7e-32 142.9 118 55.1
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 4.6e-32 142.1 125 54.4
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 6.0e-32 141.7 121 57.9
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 6.0e-32 141.7 121 54.5
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.0e-31 141.0 140 50.0
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.0e-31 141.0 124 53.2
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.7e-31 140.2 118 55.9
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.3e-31 139.8 139 49.6
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 3.9e-31 139.0 119 52.9
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 5.1e-31 138.7 139 47.5
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 5.1e-31 138.7 120 63.3
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 6.6e-31 138.3 139 48.2
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 6.6e-31 138.3 119 56.3
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 1.1e-30 137.5 139 48.2
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 1.5e-30 137.1 116 54.3
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 1.5e-30 137.1 139 49.6
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 2.5e-30 136.3 116 53.4
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 3.3e-30 136.0 117 58.1
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 4.3e-30 135.6 143 48.3
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 4.3e-30 135.6 119 53.8
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 5.6e-30 135.2 125 53.6
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 7.3e-30 134.8 123 54.5
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 9.5e-30 134.4 120 52.5
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.2e-29 134.0 119 51.3
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 2.1e-29 133.3 119 52.9
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 2.1e-29 133.3 119 52.9
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 2.1e-29 133.3 119 52.9
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 2.8e-29 132.9 121 54.5
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.8e-29 132.9 106 57.5
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 6.2e-29 131.7 119 52.1
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 6.2e-29 131.7 119 52.1
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 8.1e-29 131.3 119 51.3
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 8.1e-29 131.3 119 54.6
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.8e-28 130.2 124 50.8
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 3.1e-28 129.4 122 53.3
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.0e-28 129.0 120 54.2
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 4.0e-28 129.0 111 58.6
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 5.2e-28 128.6 108 58.3
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 8.9e-28 127.9 103 60.2
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.9e-28 127.9 104 60.6
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.5e-27 127.1 101 61.4
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.6e-27 126.3 126 50.8
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.4e-27 125.9 123 52.8
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 5.8e-27 125.2 125 49.6
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.7e-26 123.6 163 41.7
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 2.9e-26 122.9 120 50.0
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 3.5e-24 115.9 98 56.1
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 3.0e-23 112.8 125 43.2
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 5.1e-23 112.1 138 44.9
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 3.6e-21 105.9 78 64.1
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.6e-16 90.5 64 67.2
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 2.7e-16 89.7 64 68.8
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 1.0e-15 87.8 63 69.8
Lj6g0002949 Lotus japonicus HOM05D003887 ORTHO05D236423 1.3e-15 87.4 75 64.0
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 8.7e-15 84.7 64 64.1
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 7.3e-14 81.6 64 62.5
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 7.3e-14 81.6 64 62.5
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 9.6e-14 81.3 56 64.3
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 3.6e-13 79.3 110 37.3
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 8.1e-13 78.2 81 54.3
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.1e-12 77.8 73 54.8
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.5e-11 73.9 99 37.4
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 3.8e-10 69.3 52 59.6
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.4e-10 68.6 52 61.5
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 6.4e-10 68.6 55 58.2
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.4e-09 67.4 76 42.1
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 7.1e-09 65.1 71 49.3
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.2e-08 64.3 66 51.5
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 2.1e-08 63.5 58 58.6


User provided reference genes

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