Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 4.1e-104 381.3 182 100.0
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 2.5e-53 212.6 169 65.7
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 5.8e-50 201.4 182 60.4
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 2.9e-49 199.1 182 58.2
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 2.3e-46 189.5 155 62.6
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 5.6e-45 184.9 181 52.5
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 9.5e-45 184.1 194 52.6
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 1.2e-44 183.7 179 55.3
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 1.4e-43 180.3 171 53.2
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 1.8e-43 179.9 179 52.0
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 6.8e-43 177.9 179 52.5
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 1.5e-42 176.8 186 53.8
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 1.5e-42 176.8 200 47.0
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 2.0e-42 176.4 180 52.8
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.6e-42 176.0 154 53.9
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 5.8e-42 174.9 191 49.2
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 7.5e-42 174.5 181 50.8
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 1.3e-41 173.7 179 49.7
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 3.7e-41 172.2 180 52.2
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 6.4e-41 171.4 189 45.5
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 1.1e-40 170.6 185 48.6
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 2.4e-40 169.5 140 57.1
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 7.1e-40 167.9 187 43.3
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 9.2e-40 167.5 189 48.1
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.2e-39 167.2 188 45.2
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 1.3e-38 163.7 168 47.6
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 2.3e-38 162.9 157 53.5
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 3.0e-38 162.5 142 51.4
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 3.9e-38 162.2 163 48.5
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 5.1e-38 161.8 162 50.6
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 5.1e-38 161.8 176 47.2
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 6.6e-38 161.4 142 51.4
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 6.6e-38 161.4 142 51.4
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.1e-37 160.6 156 51.9
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 1.5e-37 160.2 150 52.0
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 3.3e-37 159.1 188 47.9
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 3.3e-37 159.1 184 45.1
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 5.6e-37 158.3 184 45.1
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 5.6e-37 158.3 154 50.6
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 7.3e-37 157.9 140 52.1
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 1.2e-36 157.1 202 45.5
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 1.2e-36 157.1 142 50.0
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 2.1e-36 156.4 186 43.0
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 4.7e-36 155.2 200 47.5
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 1.4e-35 153.7 167 47.3
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.8e-35 153.3 146 50.7
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 2.3e-35 152.9 153 49.7
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 3.1e-35 152.5 165 47.9
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 8.9e-35 151.0 184 42.9
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 2.0e-34 149.8 140 50.7
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 2.6e-34 149.4 178 43.8
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 3.4e-34 149.1 154 48.7
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 4.4e-34 148.7 172 45.9
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 7.6e-34 147.9 160 48.8
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 7.6e-34 147.9 160 48.8
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 4.9e-33 145.2 168 45.8
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 6.4e-33 144.8 203 45.8
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 9.2e-32 141.0 159 49.1
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.2e-31 140.6 173 42.8
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.2e-31 140.6 188 41.5
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.6e-31 140.2 165 44.2
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 1.6e-31 140.2 171 46.2
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 1.0e-30 137.5 173 42.2
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 1.0e-30 137.5 174 42.0
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 3.0e-30 136.0 146 47.3
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 5.1e-30 135.2 178 40.4
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 2.5e-29 132.9 190 41.1
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 3.3e-29 132.5 174 42.5
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 4.3e-29 132.1 172 41.9
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.2e-28 130.6 162 44.4
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 2.1e-28 129.8 136 45.6
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 2.1e-28 129.8 178 42.1
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.1e-28 129.8 161 42.9
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.1e-28 129.8 161 42.9
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 4.7e-28 128.6 190 42.1
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 6.2e-28 128.3 166 41.6
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.8e-27 126.7 138 47.8
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 2.4e-27 126.3 156 44.2
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.4e-27 126.3 136 46.3
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 2.4e-27 126.3 176 40.9
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 2.4e-27 126.3 186 39.8
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 4.0e-27 125.6 134 44.8
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 8.9e-27 124.4 151 44.4
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.5e-26 123.6 141 41.1
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 1.5e-26 123.6 180 38.9
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.0e-26 123.2 168 40.5
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 2.0e-26 123.2 140 44.3
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 2.0e-26 123.2 142 43.0
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 3.4e-26 122.5 140 44.3
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 3.4e-26 122.5 140 44.3
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 4.4e-26 122.1 180 40.0
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 4.4e-26 122.1 172 40.7
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 5.8e-26 121.7 170 38.8
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 7.6e-26 121.3 165 38.8
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 9.9e-26 120.9 164 40.2
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 1.3e-25 120.6 173 38.2
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.3e-25 120.6 139 47.5
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 1.7e-25 120.2 167 38.3
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.7e-25 120.2 135 45.9
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.7e-25 120.2 167 40.1
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 2.2e-25 119.8 140 41.4
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 2.2e-25 119.8 146 45.2
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 2.2e-25 119.8 164 39.6
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 2.9e-25 119.4 172 36.6
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 3.8e-25 119.0 165 39.4
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 6.4e-25 118.2 140 42.9
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 6.4e-25 118.2 143 40.6
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 8.4e-25 117.9 141 41.8
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.1e-24 117.5 170 37.1
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.1e-24 117.5 170 37.6
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.4e-24 117.1 180 37.2
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-24 117.1 143 41.3
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 1.4e-24 117.1 143 41.3
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 1.4e-24 117.1 136 42.6
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 1.4e-24 117.1 137 45.3
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 1.9e-24 116.7 143 40.6
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 2.4e-24 116.3 166 40.4
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 2.4e-24 116.3 146 43.8
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 4.2e-24 115.5 139 41.0
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 4.2e-24 115.5 135 44.4
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 5.4e-24 115.2 174 37.9
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 5.4e-24 115.2 143 40.6
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 5.4e-24 115.2 142 40.1
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 7.1e-24 114.8 141 39.0
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 7.1e-24 114.8 177 37.9
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 7.1e-24 114.8 166 38.6
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 9.3e-24 114.4 168 39.9
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 1.2e-23 114.0 174 36.8
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 1.2e-23 114.0 140 42.9
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 1.6e-23 113.6 162 40.1
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.1e-23 113.2 128 44.5
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.7e-23 112.8 178 36.5
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.5e-23 112.5 161 37.3
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 3.5e-23 112.5 162 40.1
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 4.6e-23 112.1 144 41.0
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 4.6e-23 112.1 150 40.7
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 4.6e-23 112.1 175 38.9
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 4.6e-23 112.1 143 38.5
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 6.0e-23 111.7 173 36.4
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 7.8e-23 111.3 140 39.3
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 1.0e-22 110.9 140 38.6
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 1.0e-22 110.9 140 38.6
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 1.0e-22 110.9 149 40.9
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 1.0e-22 110.9 173 36.4
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 1.3e-22 110.5 143 39.2
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 1.7e-22 110.2 143 39.2
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 1.7e-22 110.2 135 41.5
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.7e-22 110.2 171 37.4
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 1.7e-22 110.2 161 39.8
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 2.3e-22 109.8 132 42.4
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.3e-22 109.8 140 39.3
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 3.0e-22 109.4 148 37.8
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.0e-22 109.4 143 38.5
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 3.9e-22 109.0 132 40.9
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 3.9e-22 109.0 132 40.9
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 6.6e-22 108.2 132 40.9
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 6.6e-22 108.2 132 40.9
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 6.6e-22 108.2 132 40.9
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 8.7e-22 107.8 141 38.3
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 1.1e-21 107.5 87 52.9
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 1.5e-21 107.1 163 36.8
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 1.5e-21 107.1 163 36.8
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 2.5e-21 106.3 172 34.9
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 3.3e-21 105.9 142 36.6
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 3.3e-21 105.9 136 39.0
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 3.3e-21 105.9 196 35.2
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 5.6e-21 105.1 97 52.6
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 7.3e-21 104.8 163 37.4
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 1.3e-20 104.0 164 36.0
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.3e-20 104.0 136 39.0
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 2.8e-20 102.8 123 43.1
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 1.8e-19 100.1 162 35.8
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 9.0e-19 97.8 174 35.6
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 3.2e-16 89.4 119 39.5
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 3.2e-16 89.4 142 39.4
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 7.9e-15 84.7 100 40.0
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 2.5e-13 79.7 169 30.8
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 1.3e-12 77.4 80 45.0
SEGI_28043 Sequoiadendron giganteum HOM05D003761 ORTHO05D004412 2.4e-08 63.2 123 31.7
RcHm_v2.0_Chr5g0000571 Rosa chinensis HOM05D003761 ORTHO05D004412 5.1e-06 55.5 56 51.8


User provided reference genes

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