Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 1.1e-139 500.7 434 100.0
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 7.4e-96 355.1 383 75.7
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 2.2e-95 353.6 382 79.1
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 6.3e-95 352.1 405 76.0
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 2.0e-93 347.1 382 77.7
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 2.2e-92 343.6 382 77.2
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 6.5e-92 342.0 400 73.2
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.6e-90 337.4 383 79.4
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 2.1e-90 337.0 388 75.8
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 3.3e-88 329.7 367 76.3
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 9.7e-88 328.2 407 75.4
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 6.3e-87 325.5 384 74.5
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 3.1e-86 323.2 402 70.1
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.6e-82 310.8 410 68.0
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 6.1e-82 308.9 330 81.2
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.0e-81 308.1 383 70.5
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 1.4e-81 307.8 416 68.0
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 1.5e-80 304.3 385 72.7
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.3e-79 301.2 441 65.8
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 6.3e-79 298.9 383 75.5
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 1.2e-77 294.7 381 69.6
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 5.9e-77 292.4 382 71.7
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.5e-75 287.7 405 66.9
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.5e-75 287.7 415 68.2
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 2.5e-75 287.0 381 70.6
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 5.5e-75 285.8 386 66.8
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 7.2e-75 285.4 387 68.7
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 9.4e-75 285.0 346 74.0
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 3.6e-74 283.1 383 68.4
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 5.2e-73 279.3 379 66.0
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 6.8e-73 278.9 378 67.2
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 6.8e-73 278.9 378 67.2
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 6.8e-73 278.9 381 68.5
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.2e-72 278.1 379 67.8
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.2e-72 278.1 379 68.1
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 1.2e-72 278.1 379 66.2
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 1.5e-72 277.7 377 69.0
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.5e-72 277.7 379 67.8
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 2.0e-72 277.3 408 64.5
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 8.3e-71 271.9 385 68.1
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 2.4e-70 270.4 380 65.8
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 7.0e-70 268.9 389 66.8
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 7.0e-70 268.9 421 65.8
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 7.0e-70 268.9 385 64.4
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.2e-69 268.1 406 65.3
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 1.6e-69 267.7 394 65.0
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 1.6e-69 267.7 397 63.7
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 7.7e-69 265.4 384 67.2
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 7.7e-69 265.4 406 65.3
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 1.0e-68 265.0 380 66.3
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 1.0e-68 265.0 385 67.3
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 2.3e-68 263.8 386 63.0
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 2.3e-68 263.8 394 69.5
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 2.9e-68 263.5 381 68.0
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 8.6e-68 261.9 386 63.2
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.9e-67 260.8 368 71.5
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 2.5e-67 260.4 382 68.6
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 3.3e-67 260.0 420 62.6
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 5.5e-67 259.2 379 66.0
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 9.5e-67 258.5 373 67.8
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.6e-66 256.5 403 65.3
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 6.1e-66 255.8 379 64.6
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 6.1e-66 255.8 403 61.8
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 8.0e-66 255.4 381 67.7
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 1.0e-65 255.0 381 67.7
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 1.4e-65 254.6 414 61.8
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.4e-65 254.6 354 68.6
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.4e-65 254.6 399 63.7
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.4e-65 254.6 380 65.3
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 2.3e-65 253.8 393 65.1
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 2.3e-65 253.8 385 63.1
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.2e-64 251.5 377 66.8
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 3.4e-64 250.0 379 64.9
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.4e-64 249.6 377 66.8
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 9.8e-64 248.4 384 68.2
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 9.8e-64 248.4 383 64.8
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 2.2e-63 247.3 380 65.3
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 8.3e-63 245.4 379 66.2
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 4.1e-62 243.0 408 63.5
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 7.0e-62 242.3 320 68.1
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 9.2e-62 241.9 379 63.3
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 1.6e-61 241.1 320 67.8
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 1.0e-60 238.4 379 65.4
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 2.9e-60 236.9 348 68.4
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 5.0e-60 236.1 407 60.2
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 6.6e-60 235.7 403 60.5
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 6.6e-60 235.7 379 64.9
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 4.3e-59 233.0 384 61.5
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 1.8e-57 227.6 382 63.1
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 5.2e-57 226.1 402 57.2
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 1.2e-56 224.9 378 59.8
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 1.2e-56 224.9 382 61.8
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 4.4e-56 223.0 378 60.6
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 5.8e-56 222.6 378 65.3
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 2.2e-55 220.7 201 57.2
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 2.2e-55 220.7 378 59.3
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 1.9e-54 217.6 412 61.7
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 3.2e-54 216.9 393 61.3
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 1.6e-53 214.5 385 58.4
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.7e-53 213.8 326 65.6
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.7e-52 211.1 365 60.3
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 3.0e-52 210.3 326 67.2
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 5.0e-52 209.5 387 60.2
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 5.0e-52 209.5 384 61.5
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 6.6e-52 209.1 383 58.2
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 1.1e-51 208.4 384 59.4
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 6.2e-50 202.6 386 58.5
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 6.2e-50 202.6 389 59.1
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 2.3e-49 200.7 384 61.7
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 1.5e-48 198.0 327 69.4
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 2.6e-48 197.2 387 58.7
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 2.6e-48 197.2 387 58.7
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 2.6e-48 197.2 387 58.7
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 9.8e-48 195.3 386 58.5
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 9.8e-48 195.3 386 58.5
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.3e-47 194.9 376 57.4
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.3e-47 194.9 387 57.9
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 1.7e-47 194.5 312 74.0
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.9e-46 191.0 406 55.7
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 1.9e-46 191.0 387 57.1
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.9e-46 191.0 392 56.1
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 7.1e-46 189.1 390 37.2
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 8.6e-44 182.2 405 55.8
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 3.6e-42 176.8 381 59.6
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 8.1e-42 175.6 418 58.9
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 4.0e-41 173.3 382 58.1
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 2.9e-39 167.2 385 57.7
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 2.9e-39 167.2 385 57.9
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 4.6e-37 159.8 382 39.5
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 3.0e-36 157.1 382 57.6
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 3.0e-36 157.1 324 56.5
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 6.6e-36 156.0 376 57.4
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 1.1e-35 155.2 334 52.7
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 3.6e-34 150.2 387 57.1
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 3.6e-34 150.2 387 57.1
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 3.6e-34 150.2 387 57.1
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 4.7e-34 149.8 376 57.4
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 1.8e-33 147.9 121 62.0
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 1.8e-33 147.9 389 50.4
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 3.1e-33 147.1 383 54.8
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 5.4e-30 136.3 219 42.5
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 2.1e-29 134.4 193 43.0
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 6.0e-29 132.9 170 43.5
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 3.0e-28 130.6 397 54.4
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 8.7e-28 129.0 367 56.9
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.6e-26 124.8 330 58.2
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 3.4e-24 117.1 301 57.8
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 5.8e-24 116.3 398 52.5
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 7.6e-24 115.9 399 53.6
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 5.4e-22 109.8 224 37.9
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 3.5e-21 107.1 106 61.3
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 4.6e-21 106.7 392 48.2
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 6.6e-20 102.8 121 47.9
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 1.5e-19 101.7 392 42.3
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 9.6e-19 99.0 243 65.0
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 4.8e-18 96.7 276 60.5
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 1.4e-14 85.1 400 45.8
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 3.2e-14 84.0 89 52.8
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 3.2e-14 84.0 89 50.6
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 1.0e-12 79.0 226 70.4
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 1.0e-12 79.0 92 51.1
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 1.9e-11 74.7 95 42.1
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 2.8e-10 70.9 211 29.9
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 2.6e-08 64.3 142 39.4


User provided reference genes

Program Settings