Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 5.1e-85 317.8 168 100.0
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 7.4e-76 287.3 153 98.7
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 2.5e-68 262.3 154 90.3
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 8.2e-67 257.3 154 86.4
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 1.1e-66 256.9 159 84.3
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 6.9e-66 254.2 155 87.1
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 3.4e-65 251.9 155 84.5
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 1.7e-64 249.6 154 84.4
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 3.8e-64 248.4 159 80.5
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 3.8e-64 248.4 159 81.8
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 2.5e-63 245.7 154 81.8
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 5.5e-63 244.6 154 82.5
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.2e-62 243.4 159 80.5
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 2.1e-62 242.7 159 79.2
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 6.7e-61 237.7 159 79.2
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.5e-60 236.5 159 79.2
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 9.7e-60 233.8 159 77.4
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.6e-59 233.0 159 78.0
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 4.5e-57 224.9 154 74.0
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 2.2e-56 222.6 156 73.1
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.1e-55 220.3 154 76.0
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.4e-55 219.9 155 72.3
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 3.2e-55 218.8 155 74.2
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 5.5e-55 218.0 152 73.0
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 5.5e-55 218.0 154 73.4
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 7.2e-55 217.6 152 72.4
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 9.4e-55 217.2 153 71.9
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 9.4e-55 217.2 154 74.7
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 1.2e-54 216.9 153 73.2
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.2e-54 216.9 152 72.4
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.2e-54 216.9 154 74.0
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 2.1e-54 216.1 152 71.7
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.1e-54 216.1 152 71.7
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.7e-54 215.7 155 72.9
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 4.6e-54 214.9 155 73.5
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 6.1e-54 214.5 152 71.7
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 7.9e-54 214.2 157 73.2
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.0e-53 213.8 155 71.6
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 1.0e-53 213.8 152 71.7
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 1.4e-53 213.4 154 72.7
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 2.3e-53 212.6 154 72.1
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 3.0e-53 212.2 154 74.0
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 5.1e-53 211.5 154 71.4
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 5.1e-53 211.5 154 71.4
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.7e-53 211.1 154 70.8
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 6.7e-53 211.1 157 70.7
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 8.8e-53 210.7 154 66.9
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 1.1e-52 210.3 154 71.4
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 2.0e-52 209.5 154 72.7
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 2.0e-52 209.5 157 71.3
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 3.3e-52 208.8 157 72.0
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.7e-52 208.0 157 70.7
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 5.7e-52 208.0 155 69.7
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 5.7e-52 208.0 155 69.0
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 9.7e-52 207.2 157 70.1
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 9.7e-52 207.2 155 67.7
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 1.3e-51 206.8 154 71.4
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 1.3e-51 206.8 152 69.7
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 2.2e-51 206.1 154 66.9
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.2e-51 206.1 155 67.7
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.8e-51 205.7 155 67.1
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 2.8e-51 205.7 157 70.7
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 2.8e-51 205.7 157 71.3
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 2.8e-51 205.7 154 67.5
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.8e-51 205.7 154 66.9
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 4.8e-51 204.9 154 66.9
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 6.3e-51 204.5 155 67.1
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 2.4e-50 202.6 154 68.8
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 4.1e-50 201.8 152 70.4
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 5.3e-50 201.4 152 71.7
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 1.2e-49 200.3 154 70.1
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.2e-49 200.3 152 67.8
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 2.0e-49 199.5 152 69.7
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 2.0e-49 199.5 151 65.6
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.6e-49 199.1 155 67.7
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 4.5e-49 198.4 154 67.5
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.7e-48 196.4 154 66.9
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.2e-48 196.1 152 69.1
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 2.2e-48 196.1 155 64.5
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 2.9e-48 195.7 154 66.2
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 5.0e-48 194.9 154 67.5
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 1.4e-47 193.4 176 59.1
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 1.4e-47 193.4 155 65.2
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.9e-47 193.0 152 67.8
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 3.2e-47 192.2 147 68.7
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 4.2e-47 191.8 154 66.2
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 9.4e-47 190.7 154 64.9
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.6e-46 189.9 196 54.1
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 2.1e-46 189.5 154 64.3
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 3.6e-46 188.7 154 64.9
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 6.1e-46 188.0 154 64.3
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 1.0e-45 187.2 154 64.3
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 1.0e-45 187.2 154 63.6
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.4e-45 186.8 154 63.6
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.4e-45 186.8 154 63.0
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.3e-45 186.0 154 63.6
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 2.3e-45 186.0 154 63.0
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 3.9e-45 185.3 155 61.9
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 3.9e-45 185.3 154 63.0
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 5.1e-45 184.9 154 61.7
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 5.1e-45 184.9 154 61.7
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 6.7e-45 184.5 154 61.7
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 6.7e-45 184.5 154 61.7
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 6.7e-45 184.5 154 61.7
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 6.7e-45 184.5 154 61.7
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 8.8e-45 184.1 154 63.0
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 3.3e-44 182.2 152 63.8
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 4.4e-44 181.8 152 67.1
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 5.7e-44 181.4 114 86.0
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 2.2e-43 179.5 154 61.0
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 8.2e-43 177.6 155 60.0
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.4e-42 176.8 169 58.0
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 5.3e-42 174.9 136 69.1
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 2.0e-41 172.9 129 73.6
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 4.5e-41 171.8 155 59.4
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 2.2e-40 169.5 155 58.7
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 1.5e-39 166.8 166 54.8
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 1.9e-39 166.4 136 63.2
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 4.2e-39 165.2 155 59.4
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 1.8e-37 159.8 136 61.8
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 2.3e-37 159.5 157 53.5
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 4.0e-37 158.7 156 50.6
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 5.2e-37 158.3 157 57.3
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.6e-36 156.0 157 56.1
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 8.2e-35 151.0 156 50.0
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.1e-34 150.6 108 71.3
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 1.8e-34 149.8 108 69.4
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 2.0e-33 146.4 109 70.6
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 9.4e-31 137.5 109 67.9
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.6e-30 136.7 109 67.9
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 2.7e-30 136.0 146 49.3
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 2.7e-30 136.0 155 50.3
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.2e-29 131.7 138 58.0
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 8.8e-29 131.0 114 65.8
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.5e-28 130.2 145 52.4
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 1.5e-28 130.2 126 60.3
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 3.4e-28 129.0 182 45.1
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 9.8e-28 127.5 105 69.5
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.4e-26 123.6 97 64.9
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 8.5e-24 114.4 121 51.2
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 8.5e-24 114.4 121 51.2
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 1.6e-22 110.2 145 39.3
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 6.1e-22 108.2 75 76.0
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.4e-21 107.1 93 64.5
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 4.0e-21 105.5 156 39.7
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 2.8e-19 99.4 152 43.4
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 1.1e-18 97.4 130 46.2
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.3e-16 90.5 85 57.6
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 5.0e-16 88.6 124 45.2
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 1.2e-14 84.0 108 44.4
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 2.1e-14 83.2 56 76.8
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 1.4e-13 80.5 59 66.1
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 1.4e-13 80.5 50 80.0
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 4.0e-13 79.0 154 37.7
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.2e-12 77.4 79 53.2
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 5.7e-12 75.1 108 43.5
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.3e-11 73.9 70 60.0
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 6.4e-11 71.6 44 75.0
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 6.4e-11 71.6 44 75.0
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 8.3e-11 71.2 44 75.0
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-10 70.9 49 71.4
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-10 70.9 49 71.4
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 9.2e-10 67.8 55 67.3
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 3.0e-08 62.8 42 69.0
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 2.5e-07 59.7 50 68.0
FvH4_5g38702 Fragaria vesca HOM05D003667 ORTHO05D004397 1.6e-06 57.0 38 71.1
Oeu032224.2 Olea europaea HOM05D003667 ORTHO05D004397 3.6e-06 55.8 44 65.9


User provided reference genes

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