Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 0.0e+00 1251.5 623 100.0
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 0.0e+00 1154.4 624 92.9
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 2.8e-290 1001.5 624 80.0
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 2.0e-288 995.3 623 79.5
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 4.5e-288 994.2 629 79.0
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 5.9e-288 993.8 623 79.1
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 3.8e-287 991.1 623 79.0
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 2.3e-279 965.3 624 76.6
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 1.0e-276 956.4 627 77.4
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.0e-275 952.2 625 77.3
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 9.8e-275 949.9 627 77.0
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 1.7e-274 949.1 625 77.1
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 2.2e-242 842.4 626 67.9
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 2.4e-236 822.4 633 66.0
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 1.3e-234 816.6 627 65.9
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 2.7e-232 808.9 630 66.0
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 2.7e-232 808.9 625 65.4
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 6.0e-232 807.7 627 65.1
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 5.1e-231 804.7 628 65.4
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 3.3e-230 802.0 627 64.8
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 3.6e-229 798.5 627 64.6
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 1.8e-228 796.2 629 63.9
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 2.0e-227 792.7 627 63.8
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 9.3e-225 783.9 627 64.9
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 6.0e-224 781.2 625 63.5
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 7.4e-222 774.2 628 64.2
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 1.4e-220 770.0 629 62.3
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 9.0e-220 767.3 607 64.6
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 5.8e-219 764.6 628 64.0
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 3.8e-218 761.9 628 61.8
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 4.9e-218 761.5 629 62.5
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 1.4e-217 760.0 633 62.2
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 7.1e-217 757.7 629 62.3
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.8e-215 753.1 629 62.0
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 3.9e-215 751.9 633 61.9
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.9e-215 751.9 627 62.4
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 8.7e-215 750.7 633 61.8
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.9e-214 749.6 627 62.2
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 2.1e-213 746.1 628 61.9
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 2.4e-212 742.7 626 60.4
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 9.0e-212 740.7 659 58.9
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 4.5e-211 738.4 629 61.7
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 1.1e-209 733.8 629 60.4
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 2.5e-209 732.6 627 61.1
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 2.5e-209 732.6 631 59.7
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 3.2e-209 732.3 627 61.6
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 3.2e-209 732.3 628 59.4
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 7.2e-209 731.1 629 60.3
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 7.2e-209 731.1 627 60.1
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 1.6e-208 729.9 633 60.0
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 2.1e-208 729.6 625 59.8
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 3.5e-208 728.8 626 60.1
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 1.3e-207 726.9 626 60.1
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 3.0e-207 725.7 627 59.8
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 9.7e-206 720.7 626 59.6
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 3.7e-205 718.8 575 63.3
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 8.2e-205 717.6 695 56.0
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.4e-204 716.8 628 60.2
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 2.6e-203 712.6 490 75.3
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 5.9e-203 711.4 689 55.4
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 3.2e-201 705.7 626 58.9
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 5.5e-201 704.9 626 58.8
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 1.2e-200 703.7 532 65.2
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 2.7e-200 702.6 640 58.9
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 4.6e-200 701.8 626 58.8
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 6.1e-200 701.4 626 58.8
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 7.9e-200 701.0 625 58.1
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 1.4e-199 700.3 643 58.8
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.8e-199 699.9 648 57.3
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 3.0e-199 699.1 626 59.1
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 3.9e-199 698.7 626 58.0
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 8.8e-199 697.6 626 58.5
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 8.8e-199 697.6 628 59.7
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 7.4e-198 694.5 627 58.2
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 9.7e-198 694.1 631 58.2
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 9.7e-198 694.1 626 57.8
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 1.7e-197 693.3 626 57.7
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 6.3e-197 691.4 627 58.7
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 1.8e-196 689.9 627 57.7
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 7.7e-195 684.5 623 58.3
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 1.4e-193 680.2 624 54.8
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 3.6e-192 675.6 627 55.0
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 5.1e-191 671.8 627 57.3
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 1.5e-190 670.2 625 55.8
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 8.2e-189 664.5 626 55.8
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 1.3e-186 657.1 625 54.9
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 7.2e-185 651.4 625 53.9
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 2.7e-184 649.4 627 54.4
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 8.8e-183 644.4 587 57.2
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 9.7e-182 641.0 626 54.6
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 1.3e-181 640.6 626 54.0
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.3e-181 640.6 664 54.4
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 1.4e-180 637.1 667 53.4
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 9.1e-180 634.4 640 52.7
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 4.7e-176 622.1 629 53.6
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 1.5e-174 617.1 533 61.7
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 3.2e-169 599.4 628 52.7
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 2.3e-167 593.2 626 51.3
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 5.7e-158 562.0 644 47.7
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 5.7e-158 562.0 644 47.7
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.9e-157 559.7 640 47.8
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 1.1e-156 557.8 625 50.2
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 4.0e-151 539.3 625 49.1
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 3.9e-146 522.7 620 47.1
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 2.1e-144 516.9 604 48.8
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.5e-139 499.6 630 47.1
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 1.2e-134 484.6 652 42.8
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 2.0e-134 483.8 487 52.0
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 1.6e-131 474.2 403 59.6
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.0e-130 471.5 384 61.7
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 4.3e-129 466.1 637 40.3
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 7.9e-115 418.7 584 42.0
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 8.7e-114 415.2 404 55.9
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 4.5e-110 402.9 496 45.2
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.1e-108 398.3 407 54.1
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 2.6e-81 307.4 219 71.2
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 2.3e-74 284.3 762 28.3
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 1.4e-71 275.0 437 39.6
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 1.2e-67 261.9 626 31.3
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 5.7e-57 226.5 270 47.8
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 6.3e-56 223.0 246 48.0
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 7.0e-55 219.5 391 34.5
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 2.8e-51 207.6 144 75.0
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.4e-50 205.3 130 76.9
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.3e-45 188.7 175 57.7
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.5e-36 158.7 550 26.9
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.5e-33 148.7 97 75.3
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 7.5e-33 146.4 94 71.3
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 2.0e-30 138.3 103 67.0
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 2.3e-26 124.8 164 43.9
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 6.0e-22 110.2 81 76.5
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.0e-21 107.8 154 46.1
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 8.6e-21 106.3 146 40.4
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 9.9e-17 92.8 119 46.2
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 3.8e-16 90.9 74 56.8
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 7.1e-15 86.7 132 37.9
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 2.7e-14 84.7 65 73.8
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 7.8e-14 83.2 95 48.4
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 1.0e-13 82.8 54 70.4
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 3.0e-13 81.3 135 40.7
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 6.6e-13 80.1 66 59.1
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 1.6e-11 75.5 69 56.5
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 4.7e-11 73.9 75 62.7
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 4.7e-11 73.9 84 50.0
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 1.8e-10 72.0 47 66.0
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 9.0e-10 69.7 49 61.2
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 1.9e-07 62.0 51 58.8
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 5.4e-07 60.5 108 38.0
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 1.6e-06 58.9 43 58.1


User provided reference genes

Program Settings