Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 0.0e+00 1281.5 671 100.0
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 0.0e+00 1085.9 677 84.9
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 0.0e+00 1084.3 674 85.5
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 1.8e-311 1072.0 673 84.7
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 2.3e-306 1055.0 673 83.1
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 3.4e-305 1051.2 674 82.9
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.2e-289 999.6 731 75.6
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 7.5e-289 996.9 677 77.3
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 3.5e-286 988.0 672 78.6
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 3.5e-278 961.4 614 83.7
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 4.6e-270 934.5 672 75.1
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 1.9e-268 929.1 673 75.3
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 5.6e-268 927.5 624 80.6
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 2.9e-264 915.2 671 74.7
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 2.9e-264 915.2 671 74.7
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 9.3e-263 910.2 674 72.7
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 1.6e-262 909.4 672 70.5
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 8.1e-259 897.1 672 71.9
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 5.3e-258 894.4 667 72.4
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 2.6e-257 892.1 667 73.8
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 4.5e-257 891.3 670 74.5
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 2.7e-254 882.1 672 71.6
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 4.6e-254 881.3 672 72.0
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.3e-252 875.2 699 66.1
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 9.6e-252 873.6 670 73.1
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 2.1e-251 872.5 673 71.5
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 3.1e-250 868.6 673 72.1
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 4.0e-250 868.2 694 70.5
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.0e-249 865.9 638 73.2
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 4.5e-249 864.8 673 71.9
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 4.9e-248 861.3 681 69.6
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 4.9e-248 861.3 672 70.7
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 1.9e-247 859.4 629 73.6
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 4.8e-243 844.7 622 75.1
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 1.1e-242 843.6 671 70.5
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 2.4e-242 842.4 674 69.1
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.5e-241 839.7 673 70.0
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 3.4e-241 838.6 671 70.8
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 8.4e-240 833.9 674 68.8
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 1.9e-239 832.8 677 70.2
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 2.5e-239 832.4 664 70.6
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.5e-239 831.2 674 68.1
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 7.1e-239 830.9 676 69.8
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.3e-237 826.6 672 68.9
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 1.5e-236 823.2 677 69.4
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 3.1e-234 815.5 649 69.3
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 6.9e-234 814.3 674 68.1
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 9.4e-231 803.9 680 66.8
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 4.6e-230 801.6 789 61.1
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 2.3e-229 799.3 660 69.2
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 1.1e-228 797.0 679 67.6
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 5.7e-228 794.7 681 65.9
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 1.7e-227 793.1 679 66.0
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.7e-227 793.1 681 67.7
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 2.8e-227 792.3 672 67.3
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 2.0e-225 786.2 667 65.2
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.7e-224 783.1 640 68.0
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 7.2e-223 777.7 668 65.9
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 1.6e-222 776.5 673 66.1
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 1.7e-216 756.5 554 75.6
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 5.0e-216 755.0 663 66.4
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 1.4e-215 753.4 648 67.1
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 1.8e-213 746.5 648 65.3
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.9e-213 745.3 607 69.9
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 1.5e-212 743.4 670 65.8
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 3.3e-212 742.3 560 74.1
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 6.3e-211 738.0 669 65.0
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 4.5e-209 731.9 680 63.2
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 1.3e-208 730.3 675 60.3
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 1.2e-206 723.8 682 62.5
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 1.4e-205 720.3 671 63.8
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 4.0e-205 718.8 670 63.6
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 6.7e-205 718.0 673 63.3
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 8.8e-205 717.6 667 63.1
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 8.8e-205 717.6 667 63.1
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 1.5e-204 716.8 681 61.8
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 4.4e-204 715.3 738 56.0
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 1.3e-203 713.8 662 63.0
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 4.8e-203 711.8 662 62.8
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 4.8e-203 711.8 662 62.8
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 1.4e-202 710.3 668 62.9
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 1.3e-200 703.7 670 63.9
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 3.8e-200 702.2 664 62.2
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 3.8e-200 702.2 664 62.2
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 3.2e-199 699.1 658 63.7
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.0e-197 694.1 545 71.6
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 1.8e-197 693.3 692 60.5
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 4.0e-197 692.2 525 71.4
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 8.9e-189 664.5 624 63.0
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 3.4e-188 662.5 497 73.0
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 1.4e-186 657.1 693 57.0
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 7.8e-185 651.4 667 54.9
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 2.5e-183 646.4 669 55.9
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.4e-181 640.6 604 59.1
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 1.8e-181 640.2 450 77.6
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 2.3e-181 639.8 673 55.3
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 9.2e-178 627.9 678 56.6
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 3.9e-176 622.5 601 61.6
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 4.3e-175 619.0 617 57.9
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 2.2e-171 606.7 653 57.1
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 5.2e-165 585.5 669 53.5
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.9e-163 579.7 716 47.9
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 6.4e-163 578.6 468 64.7
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 2.8e-158 563.1 660 53.9
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 2.0e-156 557.0 662 54.2
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 7.1e-154 548.5 409 76.3
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 3.8e-147 526.2 614 50.0
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 1.3e-134 484.6 439 65.4
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 1.6e-134 484.2 608 48.4
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 4.5e-132 476.1 678 45.3
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 6.5e-123 445.7 544 53.3
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 1.9e-122 444.1 612 45.4
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 8.2e-110 402.1 560 45.4
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 2.4e-109 400.6 693 41.3
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 5.1e-104 382.9 311 76.5
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 1.1e-98 365.2 546 46.2
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 1.5e-95 354.8 283 78.1
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 4.5e-76 290.0 302 62.3
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 7.7e-76 289.3 475 40.2
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 9.5e-66 255.8 182 84.1
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 8.3e-62 242.7 335 40.9
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.4e-61 241.1 200 57.5
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 1.0e-59 235.7 310 53.9
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 1.5e-58 231.9 324 42.3
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.7e-54 218.4 291 51.5
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.4e-53 215.3 289 39.8
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 2.3e-51 208.0 221 66.1
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 3.0e-51 207.6 276 51.4
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.6e-49 200.7 190 73.7
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 2.2e-46 191.4 167 56.9
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 2.7e-44 184.5 203 45.8
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 8.6e-43 179.5 169 63.9
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 1.2e-41 175.6 103 92.2
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 1.5e-31 142.1 83 79.5
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 3.4e-31 141.0 97 72.2
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 4.4e-31 140.6 277 33.2
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.8e-24 118.6 89 77.5
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 7.9e-20 103.2 80 61.2
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.0e-19 102.8 113 54.0
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 1.3e-19 102.4 92 47.8
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 1.3e-19 102.4 92 47.8
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 6.7e-19 100.1 308 27.9
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 1.9e-18 98.6 59 78.0
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 6.2e-17 93.6 127 37.0
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 1.8e-16 92.0 73 57.5
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 1.2e-12 79.3 51 76.5
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 1.2e-12 79.3 53 66.0
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 1.0e-11 76.3 176 29.5
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 2.3e-11 75.1 134 37.3
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 8.2e-09 66.6 68 48.5
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 8.2e-09 66.6 68 48.5
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 2.4e-08 65.1 170 27.1
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 1.5e-07 62.4 49 69.4
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 1.0e-06 59.7 36 86.1
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.3e-06 59.3 32 90.6
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 1.7e-06 58.9 66 50.0
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.2e-06 58.5 34 88.2


User provided reference genes

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