Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0021431 Lotus japonicus HOM05D002203 ORTHO05D011972 3.4e-53 212.6 245 100.0
Cpa.g.sc147.32 Carica papaya HOM05D002203 ORTHO05D002647 6.6e-17 92.0 242 63.6
TAR633G0927 Trochodendron aralioides HOM05D002203 ORTHO05D002647 2.1e-15 87.0 243 62.6
BolC3t13570H Brassica oleracea HOM05D002203 ORTHO05D002647 4.7e-15 85.9 130 43.8
SHI38760 Sapria himalayana HOM05D002203 ORTHO05D000027 8.1e-15 85.1 135 39.3
A10p20350 Brassica napus HOM05D002203 ORTHO05D002647 4.0e-14 82.8 47 80.9
BraA10t44106Z Brassica rapa HOM05D002203 ORTHO05D002647 4.0e-14 82.8 47 80.9
C09p56950 Brassica napus HOM05D002203 ORTHO05D002647 9.0e-14 81.6 47 78.7
BolC9t58549H Brassica oleracea HOM05D002203 ORTHO05D002647 9.0e-14 81.6 47 78.7
FAN24G1552 Fragaria x ananassa HOM05D002203 ORTHO05D002647 2.0e-13 80.5 46 82.6
Hma1.2p1_0610F.1_g188580 Hydrangea macrophylla HOM05D002203 ORTHO05D002647 2.0e-13 80.5 45 82.2
A02p01660 Brassica napus HOM05D002203 ORTHO05D002647 5.8e-13 79.0 47 80.9
Lsat_1_v5_gn_3_84821 Lactuca sativa HOM05D002203 ORTHO05D002647 5.8e-13 79.0 47 80.9
ClCG05G005280 Citrullus lanatus HOM05D002203 ORTHO05D002647 7.6e-13 78.6 269 46.8
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 9.9e-13 78.2 47 80.9
C09p64040 Brassica napus HOM05D002203 ORTHO05D002647 9.9e-13 78.2 47 80.9
DCAR_012477 Daucus carota HOM05D002203 ORTHO05D011972 2.9e-12 76.6 46 78.3
MD11G1284800 Malus domestica HOM05D002203 ORTHO05D002647 2.9e-12 76.6 48 81.2
MD13G1188000 Malus domestica HOM05D002203 ORTHO05D002647 2.9e-12 76.6 168 55.4
Psat3g156560 Pisum sativum HOM05D002203 ORTHO05D002647 2.9e-12 76.6 43 76.7
FAN20G0024 Fragaria x ananassa HOM05D002203 ORTHO05D002647 3.8e-12 76.3 46 80.4
BcaB01g05140 Brassica carinata HOM05D002203 ORTHO05D002647 4.9e-12 75.9 246 48.0
Dinv44507 Davidia involucrata HOM05D002203 ORTHO05D002647 4.9e-12 75.9 43 81.4
AUR62038091 Chenopodium quinoa HOM05D002203 ORTHO05D002647 6.4e-12 75.5 43 79.1
FAN27G1395 Fragaria x ananassa HOM05D002203 ORTHO05D002647 8.4e-12 75.1 46 78.3
Lsat_1_v5_gn_9_44001 Lactuca sativa HOM05D002203 ORTHO05D002647 8.4e-12 75.1 47 74.5
SHI10426 Sapria himalayana HOM05D002203 ORTHO05D000001 8.4e-12 75.1 47 74.5
PSO170G5776 Papaver somniferum HOM05D002203 ORTHO05D002647 1.1e-11 74.7 41 82.9
PSO302G0024 Papaver somniferum HOM05D002203 ORTHO05D002647 1.1e-11 74.7 41 82.9
SGA_v2.0_scaffold81G25999 Striga asiatica HOM05D002203 ORTHO05D002647 1.4e-11 74.3 43 76.7
Lj5g0014423 Lotus japonicus HOM05D002203 ORTHO05D002647 7.1e-11 72.0 40 87.5
GSVIVG01011129001 Vitis vinifera HOM05D002203 ORTHO05D002647 1.6e-10 70.9 43 76.7
Zm00001eb287530 Zea mays HOM05D002203 ORTHO05D002647 2.7e-10 70.1 43 76.7
Zm00001eb349910 Zea mays HOM05D002203 ORTHO05D002647 2.7e-10 70.1 43 76.7
TPR.G5509 Trifolium pratense HOM05D002203 ORTHO05D002647 3.5e-10 69.7 40 85.0
Ca_10926_v3 Cicer arietinum L. HOM05D002203 ORTHO05D002647 4.6e-10 69.3 37 89.2
Medtr1g104870 Medicago truncatula HOM05D002203 ORTHO05D002647 4.6e-10 69.3 37 89.2
THA.LOC104804970 Tarenaya hassleriana HOM05D002203 ORTHO05D002647 7.8e-10 68.6 44 70.5
COL.COLO4_06198 Corchorus olitorius HOM05D002203 ORTHO05D002647 1.0e-09 68.2 37 86.5
Eucgr.H03553 Eucalyptus grandis HOM05D002203 ORTHO05D002647 1.0e-09 68.2 39 82.1
Glyma.20G143500 Glycine max HOM05D002203 ORTHO05D002647 1.0e-09 68.2 37 86.5
Duzib052G0929 Durio zibethinus HOM05D002203 ORTHO05D002647 1.7e-09 67.4 39 79.5
HanXRQChr01g0003101 Helianthus annuus HOM05D002203 ORTHO05D002647 1.7e-09 67.4 44 70.5
Cfa015615 Carpinus fangiana HOM05D002203 ORTHO05D002647 2.3e-09 67.0 37 83.8
CiPaw.01G163500 Carya illinoinensis HOM05D002203 ORTHO05D002647 2.3e-09 67.0 37 83.8
Haze_00928 Corylus avellana HOM05D002203 ORTHO05D002647 2.3e-09 67.0 37 83.8
QL06p003393 Quercus lobata HOM05D002203 ORTHO05D002647 2.3e-09 67.0 37 83.8
Thecc.04G227100 Theobroma cacao HOM05D002203 ORTHO05D002647 2.3e-09 67.0 39 82.1
Actinidia40168 Actinidia chinensis HOM05D002203 ORTHO05D002647 5.1e-09 65.9 37 81.1
Glyma.10G250100 Glycine max HOM05D002203 ORTHO05D002647 5.1e-09 65.9 36 86.1
Gohir.D09G216600 Gossypium hirsutum HOM05D002203 ORTHO05D002647 5.1e-09 65.9 36 86.1
Gorai.006G237100 Gossypium raimondii HOM05D002203 ORTHO05D002647 5.1e-09 65.9 36 86.1
Lj6C597G13 Lonicera japonica HOM05D002203 ORTHO05D002647 5.1e-09 65.9 37 81.1
Nn4g26258 Nelumbo nucifera HOM05D002203 ORTHO05D002647 5.1e-09 65.9 37 81.1
PSO832G0159 Papaver somniferum HOM05D002203 ORTHO05D002647 5.1e-09 65.9 40 70.0
PGR004G2428 Punica granatum HOM05D002203 ORTHO05D002647 5.1e-09 65.9 39 79.5
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 5.1e-09 65.9 37 81.1
GSVIVG01017925001 Vitis vinifera HOM05D002203 ORTHO05D002647 5.1e-09 65.9 37 81.1
arahy.Tifrunner.gnm1.ann1.7RR6EE Arachis hypogaea HOM05D002203 ORTHO05D002647 6.6e-09 65.5 36 83.3
arahy.Tifrunner.gnm1.ann1.C0GFHN Arachis hypogaea HOM05D002203 ORTHO05D002647 6.6e-09 65.5 36 83.3
Medtr5g005940 Medicago truncatula HOM05D002203 ORTHO05D002647 6.6e-09 65.5 39 71.8
Potri.010G090900 Populus trichocarpa HOM05D002203 ORTHO05D002647 6.6e-09 65.5 37 81.1
Mapoly0013s0109 Marchantia polymorpha HOM05D002203 ORTHO05D002647 8.7e-09 65.1 43 67.4
Nn1g02239 Nelumbo nucifera HOM05D002203 ORTHO05D002647 8.7e-09 65.1 37 75.7
Phvul.007G054500 Phaseolus vulgaris HOM05D002203 ORTHO05D002647 8.7e-09 65.1 36 86.1
VMungo0720G0963 Vigna mungo HOM05D002203 ORTHO05D002647 8.7e-09 65.1 36 86.1
Potri.008G150100 Populus trichocarpa HOM05D002203 ORTHO05D002647 1.1e-08 64.7 37 81.1
Dinv38423 Davidia involucrata HOM05D002203 ORTHO05D002647 1.5e-08 64.3 37 78.4
Manes.15G026400 Manihot esculenta HOM05D002203 ORTHO05D002647 2.5e-08 63.5 36 80.6
PSO210G7293 Papaver somniferum HOM05D002203 ORTHO05D002647 2.5e-08 63.5 39 69.2
Rhsim04G0204900 Rhododendron simsii HOM05D002203 ORTHO05D002647 2.5e-08 63.5 36 80.6
Rhsim13G0025200 Rhododendron simsii HOM05D002203 ORTHO05D002647 3.3e-08 63.2 36 77.8
Hma1.2p1_0995F.1_g245630 Hydrangea macrophylla HOM05D002203 ORTHO05D002647 4.3e-08 62.8 36 80.6
Atru.chr4.2512 Acer truncatum HOM05D002203 ORTHO05D002647 5.6e-08 62.4 35 82.9
EL10Ac7g17234 Beta vulgaris HOM05D002203 ORTHO05D002647 5.6e-08 62.4 143 57.3
CiPaw.02G095100 Carya illinoinensis HOM05D002203 ORTHO05D002647 5.6e-08 62.4 35 82.9
Lalb_Chr01g0020141 Lupinus albus HOM05D002203 ORTHO05D002647 5.6e-08 62.4 146 54.1
Hund12162 Selenicereus undatus HOM05D002203 ORTHO05D002647 5.6e-08 62.4 37 78.4
Psat6g208840 Pisum sativum HOM05D002203 ORTHO05D002647 7.3e-08 62.0 34 85.3
SHI35875 Sapria himalayana HOM05D008990 ORTHO05D002647 9.6e-08 61.6 42 64.3
BcaC05g25934 Brassica carinata HOM05D002960 ORTHO05D011972 1.3e-07 61.2 42 61.9
C05p18870 Brassica napus HOM05D002203 ORTHO05D011972 1.3e-07 61.2 42 61.9
MD16G1188600 Malus domestica HOM05D002203 ORTHO05D002647 1.3e-07 61.2 36 77.8
RcHm_v2.0_Chr4g0416821 Rosa chinensis HOM05D002203 ORTHO05D002647 1.3e-07 61.2 36 77.8
THA.LOC104818780 Tarenaya hassleriana HOM05D002203 ORTHO05D002647 1.6e-07 60.8 34 82.4
C03p63390 Brassica napus HOM05D002203 ORTHO05D011972 2.1e-07 60.5 41 63.4
BolC3t18592H Brassica oleracea HOM05D002203 ORTHO05D011972 2.1e-07 60.5 41 63.4
Hma1.2p1_0257F.1_g103380 Hydrangea macrophylla HOM05D002203 ORTHO05D002647 2.1e-07 60.5 38 76.3
Manes.03G181400 Manihot esculenta HOM05D002203 ORTHO05D002647 3.6e-07 59.7 34 79.4
Phvul.002G047400 Phaseolus vulgaris HOM05D002203 ORTHO05D002647 3.6e-07 59.7 33 81.8
SHI40196 Sapria himalayana HOM05D000024 ORTHO05D000006 3.6e-07 59.7 39 69.2
VMungo1215G1236 Vigna mungo HOM05D002203 ORTHO05D002647 3.6e-07 59.7 33 81.8
MELO3C006547.2 Cucumis melo HOM05D002203 ORTHO05D002647 6.2e-07 58.9 33 81.8
CsaV3_3G013510 Cucumis sativus L. HOM05D002203 ORTHO05D002647 6.2e-07 58.9 33 81.8
Prupe.1G155300 Prunus persica HOM05D002203 ORTHO05D002647 6.2e-07 58.9 35 77.1
TWI73G0791 Tripterygium wilfordii HOM05D002203 ORTHO05D002647 6.2e-07 58.9 33 81.8
Lalb_Chr16g0376391 Lupinus albus HOM05D002203 ORTHO05D002647 8.1e-07 58.5 33 78.8
Peaxi162Scf00783g00225 Petunia axillaris HOM05D002203 ORTHO05D002647 8.1e-07 58.5 130 37.7
CSS0019077 Camellia sinensis var. sinensis HOM05D002203 ORTHO05D002647 1.1e-06 58.2 34 79.4
Ciclev10019087m.g Citrus clementina HOM05D002203 ORTHO05D002647 1.1e-06 58.2 30 86.7
Potri.005G210000 Populus trichocarpa HOM05D002203 ORTHO05D002647 1.4e-06 57.8 35 74.3
Ciclev10004440m.g Citrus clementina HOM05D002203 ORTHO05D002647 1.8e-06 57.4 32 81.2
Sed0017737 Sechium edule HOM05D002203 ORTHO05D002647 1.8e-06 57.4 33 75.8
Cfa006144 Carpinus fangiana HOM05D002203 ORTHO05D002647 2.4e-06 57.0 30 83.3
Duzib212G0654 Durio zibethinus HOM05D002203 ORTHO05D002647 2.4e-06 57.0 30 86.7
Gohir.A02G029701 Gossypium hirsutum HOM05D002203 ORTHO05D002647 2.4e-06 57.0 30 86.7
Gohir.D02G037600 Gossypium hirsutum HOM05D002203 ORTHO05D002647 2.4e-06 57.0 30 86.7
Gorai.005G041500 Gossypium raimondii HOM05D002203 ORTHO05D002647 2.4e-06 57.0 30 86.7
QL12p021752 Quercus lobata HOM05D002203 ORTHO05D002647 2.4e-06 57.0 30 86.7
HPP92_003155 Vanilla planifolia HOM05D002203 ORTHO05D002647 2.4e-06 57.0 30 86.7
Ca_24382_v3 Cicer arietinum L. HOM05D002203 ORTHO05D002647 3.1e-06 56.6 30 83.3
Haze_04706 Corylus avellana HOM05D002203 ORTHO05D002647 3.1e-06 56.6 30 80.0
Glyma.01G239200 Glycine max HOM05D002203 ORTHO05D002647 3.1e-06 56.6 30 83.3
Glyma.11G004300 Glycine max HOM05D002203 ORTHO05D002647 3.1e-06 56.6 30 83.3
TPR.G18542 Trifolium pratense HOM05D002203 ORTHO05D011972 3.1e-06 56.6 31 77.4
Phvul.001G151300 Phaseolus vulgaris HOM05D002203 ORTHO05D002647 4.0e-06 56.2 130 65.4
Sabra02G0042800 Salix brachista HOM05D002203 ORTHO05D002647 4.0e-06 56.2 35 68.6
Atru.chr5.1443 Acer truncatum HOM05D002203 ORTHO05D002647 5.3e-06 55.8 29 86.2
Ah.13g073940 Amaranthus hybridus HOM05D002203 ORTHO05D002647 5.3e-06 55.8 30 83.3
Aqoxy2G03344 Aquilegia oxysepala HOM05D002203 ORTHO05D002647 5.3e-06 55.8 30 83.3
EL10As3g23353 Beta vulgaris HOM05D002203 ORTHO05D002647 5.3e-06 55.8 30 83.3
CANSAT25G2924 Cannabis sativa HOM05D002203 ORTHO05D002647 5.3e-06 55.8 37 67.6
CANSAT78G0501 Cannabis sativa HOM05D002203 ORTHO05D002647 5.3e-06 55.8 30 83.3
AUR62038643 Chenopodium quinoa HOM05D002203 ORTHO05D002647 5.3e-06 55.8 30 83.3
AUR62043184 Chenopodium quinoa HOM05D002203 ORTHO05D002647 5.3e-06 55.8 30 83.3
Duzib151G0334 Durio zibethinus HOM05D002203 ORTHO05D002647 5.3e-06 55.8 30 83.3
TWI09G1215 Tripterygium wilfordii HOM05D002203 ORTHO05D002647 5.3e-06 55.8 30 83.3
TAR362G1000 Trochodendron aralioides HOM05D002203 ORTHO05D002647 5.3e-06 55.8 30 83.3
Thhalv10012813m.g Eutrema salsugineum HOM05D002203 ORTHO05D002647 6.9e-06 55.5 30 80.0
Actinidia00755 Actinidia chinensis HOM05D002203 ORTHO05D002647 9.0e-06 55.1 30 83.3
Actinidia09134 Actinidia chinensis HOM05D002203 ORTHO05D002647 9.0e-06 55.1 30 83.3
CAN.G1549.2 Capsicum annuum HOM05D002203 ORTHO05D002647 9.0e-06 55.1 35 71.4
Potri.002G052700 Populus trichocarpa HOM05D002203 ORTHO05D002647 9.0e-06 55.1 35 71.4
Sed0023903 Sechium edule HOM05D002203 ORTHO05D002647 9.0e-06 55.1 30 80.0


User provided reference genes

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