Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 4.4e-262 907.5 490 100.0
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 4.5e-251 870.9 472 100.0
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 1.5e-206 723.0 476 82.6
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 2.0e-206 722.6 476 82.4
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 4.2e-204 714.9 476 82.4
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.2e-203 713.4 476 82.8
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 7.9e-203 710.7 472 81.4
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 1.3e-202 709.9 471 82.4
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 2.3e-202 709.1 479 80.6
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.0e-202 708.8 476 82.4
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 2.8e-200 702.2 490 79.4
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 2.0e-198 696.0 490 79.4
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 5.8e-198 694.5 488 79.9
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 7.6e-198 694.1 486 78.0
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 7.6e-198 694.1 486 78.0
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 8.4e-197 690.6 480 79.4
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 2.1e-195 686.0 477 79.2
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 3.3e-193 678.7 483 76.6
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 3.4e-190 668.7 485 75.9
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 7.6e-190 667.5 485 75.7
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 1.0e-189 667.2 479 74.9
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 2.2e-189 666.0 480 75.8
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.4e-188 663.3 484 75.0
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 2.1e-187 659.4 479 76.2
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 2.1e-187 659.4 476 76.5
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.9e-186 655.2 499 72.3
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 3.9e-186 655.2 478 75.7
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.1e-185 653.7 485 73.6
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.3e-184 650.2 509 70.7
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 4.8e-184 648.3 478 75.5
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 1.4e-183 646.7 459 76.9
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 2.4e-183 646.0 470 75.7
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 1.2e-182 643.7 481 74.0
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.5e-182 643.3 488 72.3
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 4.5e-182 641.7 481 72.8
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 5.9e-182 641.3 478 74.5
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.0e-181 640.6 478 75.1
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.7e-181 639.8 478 74.9
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 2.2e-181 639.4 479 74.5
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 2.2e-181 639.4 480 72.1
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 2.9e-181 639.0 473 72.9
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.5e-181 637.9 478 74.7
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.1e-180 637.1 480 72.3
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.4e-180 636.7 478 74.7
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 5.1e-178 628.2 480 72.9
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 8.8e-178 627.5 479 72.2
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 8.8e-178 627.5 475 72.4
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 8.8e-178 627.5 484 70.9
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 1.5e-177 626.7 481 71.9
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 3.3e-177 625.5 483 71.6
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 1.1e-175 620.5 486 71.8
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.8e-175 619.8 478 72.0
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 4.1e-175 618.6 480 70.8
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.6e-174 615.9 477 72.5
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 4.5e-174 615.1 482 69.1
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.7e-174 614.4 472 73.3
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 6.5e-173 611.3 504 70.0
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 3.2e-172 609.0 482 70.1
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 4.2e-172 608.6 469 71.4
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 4.2e-172 608.6 482 71.2
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 4.2e-172 608.6 481 71.1
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 4.2e-172 608.6 483 69.8
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.2e-171 607.1 480 69.6
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 7.9e-171 604.4 478 68.4
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.0e-170 604.0 480 70.6
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 1.1e-169 600.5 482 69.3
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 2.0e-169 599.7 481 70.7
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 2.6e-169 599.4 482 69.1
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.3e-169 599.0 458 73.6
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 5.7e-169 598.2 476 69.5
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 1.3e-168 597.0 475 69.3
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 1.3e-168 597.0 475 68.8
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 2.2e-168 596.3 476 70.0
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 4.1e-167 592.0 476 69.3
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 5.3e-167 591.7 476 67.9
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 9.1e-167 590.9 476 68.9
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 9.1e-167 590.9 476 68.7
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 2.9e-165 585.9 476 68.3
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 4.2e-164 582.0 479 68.3
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 1.8e-162 576.6 478 66.7
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 3.9e-162 575.5 480 67.5
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 3.9e-162 575.5 484 67.8
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 6.7e-162 574.7 475 67.2
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 1.1e-161 573.9 480 66.7
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.5e-161 573.5 479 66.4
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 3.3e-161 572.4 505 64.0
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 4.4e-161 572.0 478 66.3
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.7e-161 571.6 500 66.4
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.7e-160 570.1 409 76.5
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 1.7e-160 570.1 487 64.7
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 1.7e-160 570.1 429 72.7
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 3.1e-159 565.8 480 66.2
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 9.1e-159 564.3 475 65.5
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 3.8e-157 558.9 479 65.3
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 3.2e-156 555.8 475 65.9
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 8.8e-154 547.7 482 64.5
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 8.8e-154 547.7 475 63.6
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.2e-153 547.4 483 64.2
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 3.7e-152 542.3 482 62.9
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 1.4e-151 540.4 480 63.8
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.8e-151 540.0 430 69.1
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.4e-151 539.7 477 62.9
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 6.5e-149 531.6 380 75.8
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.4e-143 511.9 356 78.4
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 1.3e-133 480.7 520 56.2
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.7e-133 480.3 480 59.6
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 8.6e-133 478.0 464 57.1
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 2.0e-129 466.8 471 58.4
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 9.2e-127 458.0 491 54.8
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 4.7e-123 445.7 482 57.1
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 8.1e-123 444.9 473 56.4
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 3.0e-117 426.4 393 64.9
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 5.1e-117 425.6 379 60.4
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.6e-115 420.6 443 58.0
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 3.1e-114 416.4 365 66.6
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 2.7e-110 403.3 393 59.5
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 6.4e-104 382.1 479 53.9
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 8.4e-96 355.1 378 59.8
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 8.4e-96 355.1 378 59.8
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 5.4e-95 352.4 195 87.7
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.8e-85 320.9 373 50.7
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 7.4e-84 315.5 253 72.7
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.2e-81 308.1 201 79.6
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 4.2e-79 299.7 374 49.2
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 2.1e-78 297.4 324 50.6
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 3.5e-78 296.6 423 45.9
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 3.7e-75 286.6 222 71.6
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 8.2e-75 285.4 407 43.0
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.1e-55 221.9 268 53.0
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.4e-53 214.9 408 36.8
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.0e-52 211.1 202 61.4
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 2.6e-49 200.7 403 34.5
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.7e-48 198.0 164 67.1
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.5e-47 194.9 339 36.9
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.2e-36 158.7 86 88.4
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 1.3e-35 155.2 288 43.4
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 1.4e-34 151.8 83 89.2
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 1.3e-32 145.2 134 62.7
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.9e-32 144.1 95 67.4
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 5.7e-28 129.8 77 80.5
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 1.8e-26 124.8 67 97.0
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 1.5e-23 115.2 185 42.7
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 3.6e-22 110.5 122 53.3
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.9e-19 100.9 125 52.0
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.4e-13 82.0 87 52.9
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.7e-09 67.8 60 61.7
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.7e-09 67.8 60 61.7
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 1.0e-08 65.9 93 40.9
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 1.3e-08 65.5 71 57.7
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.5e-07 61.2 60 56.7
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 1.6e-06 58.5 32 90.6
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.8e-06 57.8 36 77.8
Solyc05g150127.1 Solanum lycopersicum HOM05D004710 ORTHO05D005445 2.8e-06 57.8 39 76.9


User provided reference genes

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