Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 2516.5 1302 100.0
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 2018.4 1308 79.0
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1988.0 1304 78.8
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1982.6 1308 78.3
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1973.4 1278 78.6
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1892.1 1307 74.8
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1856.3 1305 74.3
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1784.2 1277 71.2
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1760.0 1277 70.6
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1700.6 1294 68.1
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1677.1 1281 68.5
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 0.0e+00 1609.0 1120 74.7
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1403.3 1282 57.3
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1400.2 1286 56.8
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1391.7 1282 56.9
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1385.5 1286 55.9
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1377.8 1394 52.5
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1370.1 1306 54.7
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1366.3 1281 56.2
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1365.1 1282 56.1
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1344.3 1281 55.2
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1341.6 1285 54.9
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1339.3 1282 55.5
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1320.4 1279 54.8
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1310.0 1285 55.0
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1297.7 1285 54.5
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1282.7 1288 52.5
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1275.4 1281 52.9
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1258.4 1269 53.5
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1248.0 1268 52.3
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1247.3 1280 51.6
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1235.3 1270 52.4
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1231.5 1151 56.6
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1230.3 1286 51.0
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1229.5 1280 50.9
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 0.0e+00 1213.0 1316 51.4
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 0.0e+00 1204.9 1272 51.2
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 0.0e+00 1189.9 1286 50.1
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 0.0e+00 1184.1 1280 49.5
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1183.7 978 65.7
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1182.5 1286 50.7
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1181.4 1276 50.5
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 0.0e+00 1178.3 1286 48.8
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 0.0e+00 1168.7 1281 49.5
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 0.0e+00 1154.4 1287 48.9
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 1149.8 1283 49.1
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 0.0e+00 1149.4 1276 49.1
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 0.0e+00 1148.7 1283 47.5
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 0.0e+00 1145.2 1283 48.2
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 0.0e+00 1139.4 1308 48.6
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1135.9 1276 47.6
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 0.0e+00 1135.2 1157 52.0
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 0.0e+00 1134.4 1280 48.2
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 0.0e+00 1132.9 1282 47.0
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 0.0e+00 1132.9 1153 51.7
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 0.0e+00 1132.5 1281 47.5
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 0.0e+00 1131.7 1285 47.0
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 0.0e+00 1127.5 1279 48.1
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1124.0 1287 47.5
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 0.0e+00 1123.2 1136 52.4
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 0.0e+00 1120.1 1287 47.4
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1114.8 1286 46.7
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 0.0e+00 1114.8 1286 46.7
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 1114.4 1287 46.9
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 0.0e+00 1106.7 1055 54.2
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 1105.1 1286 46.7
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 0.0e+00 1095.5 1326 45.3
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 0.0e+00 1085.1 1310 47.3
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1083.2 1175 49.9
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 8.9e-312 1074.7 1286 44.6
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 1.1e-310 1070.5 1280 46.0
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 3.7e-308 1062.0 1280 45.7
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 1.5e-304 1050.0 1282 45.6
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 1.4e-302 1043.5 1118 50.8
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.8e-302 1043.1 1287 45.5
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 7.7e-298 1027.7 1039 52.3
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 5.4e-291 1005.0 1149 47.5
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 1.7e-289 1000.0 1266 43.9
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 2.9e-289 999.2 1260 44.2
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 3.6e-287 992.3 894 57.6
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 4.0e-278 962.2 1279 43.2
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 8.9e-278 961.1 1275 42.4
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 1.4e-262 910.6 1197 43.0
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 1.5e-261 907.1 1237 42.4
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 2.5e-248 863.2 866 52.2
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 8.1e-247 858.2 988 48.1
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 1.7e-244 850.5 1204 42.0
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 1.3e-241 840.9 590 73.9
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 1.5e-237 827.4 1051 45.8
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 7.4e-232 808.5 1114 41.3
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 7.4e-232 808.5 756 54.4
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 1.5e-224 784.3 1151 40.6
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 3.6e-202 709.9 1272 36.9
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 3.6e-202 709.9 1007 39.7
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 2.8e-199 700.3 794 47.0
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 5.9e-197 692.6 1020 39.4
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 2.7e-186 657.1 477 73.2
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 3.6e-186 656.8 768 46.5
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 3.8e-180 636.7 650 52.2
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 3.0e-148 530.8 649 46.5
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 4.7e-146 523.5 716 43.7
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 5.2e-145 520.0 463 59.4
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 4.6e-141 506.9 397 68.3
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 7.3e-139 499.6 477 57.4
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 3.8e-135 487.3 653 43.0
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 2.3e-116 424.9 403 58.8
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 2.4e-97 361.7 1270 26.1
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.7e-95 355.5 478 43.3
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 8.5e-87 326.6 354 45.5
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 1.1e-83 316.2 1246 24.9
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 1.7e-79 302.4 602 33.7
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 1.3e-74 286.2 185 75.7
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 7.0e-73 280.4 379 43.0
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 3.2e-70 271.6 394 38.1
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 1.9e-54 219.2 290 40.7
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 2.0e-43 182.6 166 59.6
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 3.5e-40 171.8 156 59.0
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 7.8e-32 144.1 138 60.1
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 3.0e-31 142.1 129 54.3
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 2.1e-29 136.0 137 46.7
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 3.6e-29 135.2 127 55.1
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 6.8e-28 131.0 126 52.4
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 7.6e-27 127.5 116 59.5
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 7.1e-25 120.9 116 57.8
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 3.5e-24 118.6 111 56.8
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 3.6e-21 108.6 181 29.8
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 1.7e-18 99.8 543 21.9
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 5.4e-17 94.7 121 38.8
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 1.0e-15 90.5 126 38.9
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 4.5e-11 75.1 59 62.7
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 7.1e-09 67.8 65 52.3


User provided reference genes

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