Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0019018 Lotus japonicus HOM05D005785 ORTHO05D007962 4.2e-41 171.0 92 100.0
arahy.Tifrunner.gnm1.ann1.T05FEK Arachis hypogaea HOM05D005785 ORTHO05D007962 4.5e-19 97.8 67 71.6
Glyma.12G046132 Glycine max HOM05D005785 ORTHO05D007962 1.0e-18 96.7 67 73.1
Glyma.12G046200 Glycine max HOM05D005785 ORTHO05D007962 1.0e-18 96.7 67 71.6
arahy.Tifrunner.gnm1.ann1.D5Y0EF Arachis hypogaea HOM05D005785 ORTHO05D007962 3.8e-18 94.7 67 70.1
arahy.Tifrunner.gnm1.ann1.WWU0A6 Arachis hypogaea HOM05D005785 ORTHO05D007962 3.8e-18 94.7 67 70.1
arahy.Tifrunner.gnm1.ann1.DDX2YA Arachis hypogaea HOM05D005785 ORTHO05D007962 5.0e-18 94.4 67 70.1
Phvul.011G048000 Phaseolus vulgaris HOM05D005785 ORTHO05D007962 5.0e-18 94.4 67 70.1
Glyma.11G121100 Glycine max HOM05D005785 ORTHO05D007962 6.5e-18 94.0 67 68.7
arahy.Tifrunner.gnm1.ann1.41BJXF Arachis hypogaea HOM05D005785 ORTHO05D007962 8.5e-18 93.6 67 68.7
Ca_20841_v3 Cicer arietinum L. HOM05D005785 ORTHO05D007962 8.5e-18 93.6 67 70.1
arahy.Tifrunner.gnm1.ann1.IG85PU Arachis hypogaea HOM05D005785 ORTHO05D007962 1.1e-17 93.2 67 68.7
arahy.Tifrunner.gnm1.ann1.V0VBM3 Arachis hypogaea HOM05D005785 ORTHO05D007962 1.1e-17 93.2 63 73.0
VMungo1127G1831 Vigna mungo HOM05D005785 ORTHO05D007962 1.1e-17 93.2 67 68.7
Lj3g0001588 Lotus japonicus HOM05D005785 ORTHO05D007962 1.5e-17 92.8 90 58.9
TPR.G28051 Trifolium pratense HOM05D005785 ORTHO05D007962 1.5e-17 92.8 87 57.5
Psat7g185400 Pisum sativum HOM05D005785 ORTHO05D007962 7.2e-17 90.5 87 54.0
QL11p040109 Quercus lobata HOM05D005785 ORTHO05D007962 9.5e-17 90.1 65 70.8
Medtr4g068970 Medicago truncatula HOM05D005785 ORTHO05D007962 1.2e-16 89.7 87 55.2
Eucgr.G00478 Eucalyptus grandis HOM05D005785 ORTHO05D007962 1.6e-16 89.4 57 78.9
Sc14g0001770 Simmondsia chinensis HOM05D005785 ORTHO05D007962 3.6e-16 88.2 100 51.0
Peaxi162Scf00003g01433 Petunia axillaris HOM05D005785 ORTHO05D007962 4.7e-16 87.8 89 57.3
Gohir.A03G180301 Gossypium hirsutum HOM05D005785 ORTHO05D007962 6.1e-16 87.4 67 67.2
Gohir.D02G203047 Gossypium hirsutum HOM05D005785 ORTHO05D007962 6.1e-16 87.4 67 67.2
Gorai.005G229200 Gossypium raimondii HOM05D005785 ORTHO05D007962 6.1e-16 87.4 67 67.2
Nitab4.5_0001361g0190 Nicotiana tabacum HOM05D005785 ORTHO05D007962 8.0e-16 87.0 61 73.8
PGR042G3650 Punica granatum HOM05D005785 ORTHO05D007962 1.0e-15 86.7 57 77.2
Solyc10g051110.1 Solanum lycopersicum HOM05D005785 ORTHO05D007962 1.0e-15 86.7 65 69.2
PGSC0003DMG400008269 Solanum tuberosum HOM05D005785 ORTHO05D007962 1.0e-15 86.7 65 69.2
Haze_02424 Corylus avellana HOM05D005785 ORTHO05D007962 1.4e-15 86.3 57 75.4
Lalb_Chr03g0025851 Lupinus albus HOM05D005785 ORTHO05D007962 1.8e-15 85.9 67 68.7
Nitab4.5_0012694g0010 Nicotiana tabacum HOM05D005785 ORTHO05D007962 1.8e-15 85.9 61 72.1
RcHm_v2.0_Chr6g0262291 Rosa chinensis HOM05D005785 ORTHO05D007962 1.8e-15 85.9 65 64.6
AT3G18890 Arabidopsis thaliana HOM05D005785 ORTHO05D007962 2.3e-15 85.5 64 64.1
Carub.0003s1872 Capsella rubella HOM05D005785 ORTHO05D007962 3.0e-15 85.1 64 65.6
CiPaw.06G138100 Carya illinoinensis HOM05D005785 ORTHO05D007962 3.0e-15 85.1 65 66.2
Ciclev10028081m.g Citrus clementina HOM05D005785 ORTHO05D007962 3.0e-15 85.1 68 67.6
CAN.G1.48 Capsicum annuum HOM05D005785 ORTHO05D007962 4.0e-15 84.7 61 72.1
COL.COLO4_32470 Corchorus olitorius HOM05D005785 ORTHO05D007962 4.0e-15 84.7 67 67.2
FAN24G2550 Fragaria x ananassa HOM05D005785 ORTHO05D007962 5.2e-15 84.3 66 63.6
Sopen10g022810 Solanum pennellii HOM05D005785 ORTHO05D007962 5.2e-15 84.3 63 69.8
THA.LOC104800353 Tarenaya hassleriana HOM05D005785 ORTHO05D007962 5.2e-15 84.3 91 53.8
TWI79G0480 Tripterygium wilfordii HOM05D005785 ORTHO05D007962 5.2e-15 84.3 57 73.7
Hma1.2p1_2724F.1_g327510 Hydrangea macrophylla HOM05D005785 ORTHO05D007962 8.8e-15 83.6 62 69.4
BcaB06g25943 Brassica carinata HOM05D005785 ORTHO05D007962 1.2e-14 83.2 72 59.7
A05p30660 Brassica napus HOM05D005785 ORTHO05D007962 1.2e-14 83.2 72 59.7
C05p46540 Brassica napus HOM05D005785 ORTHO05D007962 1.2e-14 83.2 72 59.7
BolC5t33383H Brassica oleracea HOM05D005785 ORTHO05D007962 1.2e-14 83.2 72 59.7
BraA05t21908Z Brassica rapa HOM05D005785 ORTHO05D007962 1.2e-14 83.2 72 59.7
Hma1.2p1_1353F.1_g277650 Hydrangea macrophylla HOM05D005785 ORTHO05D007962 1.2e-14 83.2 70 62.9
CARHR094330 Cardamine hirsuta HOM05D005785 ORTHO05D007962 1.5e-14 82.8 64 64.1
FvH4_2g07870 Fragaria vesca HOM05D005785 ORTHO05D007962 1.5e-14 82.8 65 63.1
FAN20G1723 Fragaria x ananassa HOM05D005785 ORTHO05D007962 1.5e-14 82.8 65 63.1
Potri.009G111323 Populus trichocarpa HOM05D005785 ORTHO05D007962 1.5e-14 82.8 57 71.9
Potri.T124404 Populus trichocarpa HOM05D005785 ORTHO05D007962 1.5e-14 82.8 57 71.9
AL3G32280 Arabidopsis lyrata HOM05D005785 ORTHO05D007962 2.0e-14 82.4 64 62.5
FAN15G0249 Fragaria x ananassa HOM05D005785 ORTHO05D007962 2.0e-14 82.4 65 61.5
Cc02_g17970 Coffea canephora HOM05D005785 ORTHO05D007962 2.6e-14 82.0 67 65.7
Prupe.8G106300 Prunus persica HOM05D005785 ORTHO05D007962 2.6e-14 82.0 57 70.2
TAR628G1306 Trochodendron aralioides HOM05D005785 ORTHO05D007962 2.6e-14 82.0 71 63.4
Atru.chr5.2923 Acer truncatum HOM05D005785 ORTHO05D007962 3.4e-14 81.6 70 64.3
CSS0030803 Camellia sinensis var. sinensis HOM05D005785 ORTHO05D007962 3.4e-14 81.6 84 56.0
Hma1.2p1_2724F.1_g327500 Hydrangea macrophylla HOM05D005785 ORTHO05D007962 3.4e-14 81.6 57 71.9
MD10G1083200 Malus domestica HOM05D005785 ORTHO05D007962 3.4e-14 81.6 83 54.2
Rhsim11G0172800 Rhododendron simsii HOM05D005785 ORTHO05D007962 3.4e-14 81.6 67 64.2
CSS0035207 Camellia sinensis var. sinensis HOM05D005785 ORTHO05D007962 4.4e-14 81.3 67 64.2
Cpa.g.sc62.103 Carica papaya HOM05D005785 ORTHO05D007962 5.7e-14 80.9 84 54.8
Manes.15G147600 Manihot esculenta HOM05D005785 ORTHO05D007962 5.7e-14 80.9 86 57.0
SalBow6G0785 Salvia bowleyana HOM05D005785 ORTHO05D007962 5.7e-14 80.9 73 57.5
Actinidia00495 Actinidia chinensis HOM05D005785 ORTHO05D007962 9.8e-14 80.1 93 50.5
Dinv23561 Davidia involucrata HOM05D005785 ORTHO05D007962 9.8e-14 80.1 67 65.7
vmacro02148 Vaccinium macrocarpon HOM05D005785 ORTHO05D007962 9.8e-14 80.1 84 52.4
GSVIVG01031907001 Vitis vinifera HOM05D005785 ORTHO05D007962 9.8e-14 80.1 67 67.2
Aqoxy6G00992 Aquilegia oxysepala HOM05D005785 ORTHO05D007962 1.3e-13 79.7 57 70.2
Duzib132G1036 Durio zibethinus HOM05D005785 ORTHO05D007962 1.7e-13 79.3 57 68.4
Potri.004G150300 Populus trichocarpa HOM05D005785 ORTHO05D007962 1.7e-13 79.3 57 70.2
Sabra09G0085100 Salix brachista HOM05D005785 ORTHO05D007962 1.7e-13 79.3 85 55.3
DCAR_022090 Daucus carota HOM05D005785 ORTHO05D009166 2.2e-13 79.0 74 55.4
Thecc.02G121200 Theobroma cacao HOM05D005785 ORTHO05D007962 2.2e-13 79.0 67 62.7
Thhalv10020309m.g Eutrema salsugineum HOM05D005785 ORTHO05D007962 3.7e-13 78.2 90 51.1
Sp3g16990 Schrenkiella parvula HOM05D005785 ORTHO05D007962 3.7e-13 78.2 82 54.9
Aa31LG8G5730 Aethionema arabicum HOM05D005785 ORTHO05D007962 4.9e-13 77.8 64 62.5
FAN27G0274 Fragaria x ananassa HOM05D005785 ORTHO05D007962 4.9e-13 77.8 85 51.8
PSO541G4825 Papaver somniferum HOM05D005785 ORTHO05D007962 4.9e-13 77.8 65 61.5
Nn5g31359 Nelumbo nucifera HOM05D005785 ORTHO05D007962 6.3e-13 77.4 79 58.2
PSO675G5886 Papaver somniferum HOM05D005785 ORTHO05D007962 6.3e-13 77.4 65 60.0
ECA236G5032 Erigeron canadensis HOM05D005785 ORTHO05D007962 8.3e-13 77.0 66 60.6
CANSAT80G1909 Cannabis sativa HOM05D005785 ORTHO05D007962 1.1e-12 76.6 83 54.2
AUR62011362 Chenopodium quinoa HOM05D000048 ORTHO05D000445 1.1e-12 76.6 57 64.9
Migut.B00273 Erythranthe guttata HOM05D005785 ORTHO05D007962 1.1e-12 76.6 84 54.8
Nn5g29471 Nelumbo nucifera HOM05D005785 ORTHO05D007962 1.1e-12 76.6 57 68.4
MBI16_g10972_MAGBIO Magnolia biondii HOM05D005785 ORTHO05D007962 1.8e-12 75.9 73 57.5
EL10Ac9g21765 Beta vulgaris HOM05D005785 ORTHO05D007962 2.4e-12 75.5 63 58.7
Sed0026918 Sechium edule HOM05D005785 ORTHO05D007962 2.4e-12 75.5 59 62.7
AUR62016697 Chenopodium quinoa HOM05D005785 ORTHO05D007962 3.1e-12 75.1 57 64.9
MELO3C018409.2 Cucumis melo HOM05D005785 ORTHO05D007962 3.1e-12 75.1 56 66.1
AUR62011364 Chenopodium quinoa HOM05D005785 ORTHO05D007962 4.1e-12 74.7 56 64.3
HanXRQChr16g0505051 Helianthus annuus HOM05D005785 ORTHO05D007962 4.1e-12 74.7 57 63.2
Ah.01g006150 Amaranthus hybridus HOM05D005785 ORTHO05D007962 9.2e-12 73.6 82 51.2
Lsat_1_v5_gn_7_89860 Lactuca sativa HOM05D005785 ORTHO05D007962 1.2e-11 73.2 74 52.7
unitig_0.g71 Utricularia gibba HOM05D005785 ORTHO05D007962 1.2e-11 73.2 56 60.7
MSTRG.5387 Avicennia marina HOM05D005785 ORTHO05D007962 2.0e-11 72.4 74 54.1
ATR0733G035 Amborella trichopoda HOM05D005785 ORTHO05D007962 2.7e-11 72.0 56 64.3
arahy.Tifrunner.gnm1.ann1.6T7UPN Arachis hypogaea HOM05D003636 ORTHO05D005832 1.1e-09 66.6 52 61.5
arahy.Tifrunner.gnm1.ann1.64QJ3Y Arachis hypogaea HOM05D005785 ORTHO05D007962 1.5e-09 66.2 52 61.5
CsaV3_7G010200 Cucumis sativus L. HOM05D005785 ORTHO05D007962 1.9e-09 65.9 104 44.2
Psat6g044560 Pisum sativum HOM05D005785 ORTHO05D007962 1.2e-08 63.2 46 65.2
SEGI_40956 Sequoiadendron giganteum HOM05D005785 ORTHO05D007962 1.6e-08 62.8 84 45.2
Zm00001eb118450 Zea mays HOM05D005785 ORTHO05D007962 2.1e-08 62.4 57 56.1
Actinidia12988 Actinidia chinensis HOM05D005785 ORTHO05D007962 4.7e-08 61.2 58 53.4
Os10g0100300 Oryza sativa ssp. japonica HOM05D005785 ORTHO05D007962 1.0e-07 60.1 87 43.7
CBR_g23490 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-06 56.2 53 47.2
ClCG02G005360 Citrullus lanatus HOM05D005785 ORTHO05D009166 2.6e-06 55.5 48 54.2
SMO146G0207 Selaginella moellendorffii HOM05D005785 ORTHO05D007962 2.6e-06 55.5 75 44.0
Pp3c10_3330 Physcomitrium patens HOM05D005785 ORTHO05D000513 3.4e-06 55.1 57 45.6
Hund06147 Selenicereus undatus HOM05D005785 ORTHO05D007962 4.4e-06 54.7 70 50.0


User provided reference genes

Program Settings